dsi_18099

AGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTGAGTGCCAGCGCACGTCCAACTTACCCACCCATGATAACGATGCAGCATATCATTATCATTGTGGTCATGACGAATGCAATCCGCTTAGCCAAATCAGCTTACTGCCGCGCACAATGGTGCCGGGAAATCAGGGTGTGTCCTCTGCTCTGCTGAACGGGGCAGTTGACATCGAGCATGTACCACCATTTGGGACCAGC ************************************************.((((((...(((..((((........((((..(((((((.((((.....)))).))))))).))))....))))..)))....)))))).......(((....)))(((.((((....))))))).....(((((......)))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	GSM343915 embryo	M023 head	SRR553487 NRT_0-2 hours eggs	M024 male body
...........CGCATCATGAACTCCTTCTCCGTGGT.....................................................................................................................................................................................................................	26	0	1	2.00	2	2	0	0	0	0
.GTACCCCGACCGCATCATGAACTC.................................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
...ACCCCGACCGCATCATGAACTC.................................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
.................ATGAACTCCTTCTCCGTGGTGCCATC...............................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
......CCGACCGCATCATGAACTCCTTCTC...........................................................................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0
.................ATGAACTCCTTCTCCGTGGTGCC..................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................GACGAATGCAATCCGCTTA..............................................................................................................	19	0	1	1.00	1	0	1	0	0	0
.GTACCCCGACCGCATCATG......................................................................................................................................................................................................................................	19	0	2	0.50	1	0	1	0	0	0
........................................................GCCAGCGGACGTCCGACT................................................................................................................................................................................	18	2	4	0.25	1	0	0	0	1	0
......................CTCCTTCTCCGTTGTACC..................................................................................................................................................................................................................	18	2	12	0.08	1	0	0	0	0	1

TCATGGGGCTGGCGTAGTACTTGAGGAAGAGGCACCACGGTAGCGGGTTCCACTCACGGTCGCGTGCAGGTTGAATGGGTGGGTACTATTGCTACGTCGTATAGTAATAGTAACACCAGTACTGCTTACGTTAGGCGAATCGGTTTAGTCGAATGACGGCGCGTGTTACCACGGCCCTTTAGTCCCACACAGGAGACGAGACGACTTGCCCCGTCAACTGTAGCTCGTACATGGTGGTAAACCCTGGTCG ************************************************.((((((...(((..((((........((((..(((((((.((((.....)))).))))))).))))....))))..)))....)))))).......(((....)))(((.((((....))))))).....(((((......)))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	M023 head	SRR553488 RT_0-2 hours eggs	M024 male body	M025 embryo
.........................................................................................................................CTGCTTATGTTAGGCGACAC.............................................................................................................	20	3	4	0.25	1	1	0	0	0	0
.......................................................................................................................................................................ACCACGGCCCTTTGG....................................................................	15	1	5	0.20	1	0	0	1	0	0
.......................................................................................................................................................................................CCCACACAGGAGAGGCGA.................................................	18	2	5	0.20	1	0	1	0	0	0
..............................................................................GTGTCTACTGTTGCTACGTC........................................................................................................................................................	20	3	15	0.07	1	0	0	0	1	0
.....................................................................................................................................................................TTATCACGGCCGTTGAGTC..................................................................	19	3	18	0.06	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:23197610-23197859 -	dsi_18099	AGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTGAGTGC-------------C----------AG-----------------------------------------------------------CGCACGTCCAACTTACCCACCCATG-------AT--AACGA---------------------------------------TGCAGCA-TATCATTATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGGTGCCGGGAAATCAGGG------TGTGTCCTCTGCTCTGCTGAACG--GGGCAGTTGACATCGAGCATGTACCA--------------------------------CCATTTGGGA--------------------------------------------------------------------CCA-------------G-C
droSec2	scaffold_22:420926-421175 -		AGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTGAGTGC-------------C----------AG-----------------------------------------------------------CGCACGTCCAACTTACCCACCCATG-------AT--AACGA---------------------------------------TGCAGCA-TATCATTATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGGTGCCGGGAAATCAGGG------TGTGTCCTCTGCTCTGCTGAACG--GGGCAGTTGACATCGAGCGTGTACCA--------------------------------CCATTTGGGA--------------------------------------------------------------------CCA-------------G-T
dm3	chr3R:23798456-23798692 -		AGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTAGGTTA--------------------------------------------------------------------------------------------------------------------------GCGA-----------------------TGCTC--GCC-GGCATTGCAGCA-TATAATTATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGGTGCCAGGAAATCAGGG------TGTATCCTTTGCTCTGCTGAACG--AGGCAGTTGACATCGAGCATGTACCA--------------------------------CCATTTGGGA--------------------------------------------------------------------CCATTG-------G-GG-C
droEre2	scaffold_4820:4246288-4246520 +		AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTGC-------------TCC----CTG-----------------------------CCCACTTG----CTA-C---------------------------------------------------------------------------------------ACT-GGCATTGCAGCA-TATCATTATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGCCGCCAGCAAATCAGGG------TGTGTCCTC------GCCGAACG----GCAGTTGACATCGAGCATGTACCA--------------------------------CCATTTTGGA--------------------------------------------------------------------CCA-------------G-C
droYak3	3R:22701164-22701428 +		AGTACCCCGACCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTGC-------------TCC----ACA-----------------------------TCCAATTG------CCC---------------------------------------------------------------------------------------AAC-GGCATTGCAGCA-TATCATTATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGCTGCCAGCAAATCGGGG------TGTGTCCTC-----TGCTGAACG----CCAGTTGACATCGACCATGTACCATCTACCAACTACCAACTGCCATCAACCATGTAGCATTTTGGA--------------------------------------------------------------------CCA-------------G-C
droEug1	scf7180000409787:1810994-1811242 +		AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCAAAGGTAAGTTC-------------T----------CA---------------------TTGAC---------------AA----------------CCCA-----AACCTACC------TGCCAAAGCA----------------------------------TC--ACC------TGCAACA-GATCATTATCATT-T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-AAAATCAGCTTACTGCCGT---GGAGAATGG--GCAGCAAATCAGGGT--G--TGTGTCCTC-----TGCTGAACA----CCGGTTGACATCGACGACGTGCCA--------------------------------CCATTTTG---------------------GG--------------------------------------------GGACCA-------------C-C
droBia1	scf7180000302075:3018728-3019006 +		AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCACCCAAGGTAAGTGGGAGCTGCTTCTCCT----------TGTTCA------CCTTGTCCACCTTTTC---------------AA--CCT-GCCTGACCA----------------------------------------------------------------------------GCCAAT---GCA-GATCATTATCGT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGCACAAATCAGCTTACTGCCAC---GCACAATGGGCGCAGCAAATCAGGACCTGTGTGTGTCCTC-----TG--------------GTTGACATCGCCAGTGAGCCA--------------------------------CCAC-----------CACCTCCTCTTTAGGAG-------GAAT-----C------CCC------------------GACCA-------------GTC
droTak1	scf7180000414170:23597-23844 -		AGTACCCCGATCGGATCATGAACTCGTTCTCCGTGGTTCCCTCGCCGAAGGTAAGTTT-------------GCC-------TCACC-------------------TTTTC---------------AA--CC----------AGCCAATGG------------------CCAATGC-----------------------------------TC--ACC------TGCAGCA-GATCATTATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGCACAAATCAGCTTACTGCCAC---GCACAATGGGCGCAGCAAATCAGGGT--GTGTGTGTCCTC-----TG--------------GTTGACATCC---TT-CTCCT--------------------------------CCGTTTT-------------------TTGGGG-------G-------------------------------ACGGGGACCA-------------A-C
droEle1	scf7180000491280:4230794-4231085 +		AGTACCCCGATCGCATCATGCTTTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTGC-------------T----------TGTCTGCTTGTCTA---------TT-------------GGCTGCA--CC-----------------------------------TGCCATCGC-----------------------------------TTCTACC------TGCTACA-GATCATCATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-AAAATCAGCTTATTGCCGC---GCACAATGG--CGAGGAAATCATGG------TG--TCCTT-----CGTTGAACGTTGAACGGTTGACAACGAGGT-GGG-CT--------------------------------TCTTTAT-ATATGGC-TCTATAT-ATTTGGG-ACGCAATGGATCCACCCATGGA--CC------------------GACCA-------------C-C
droRho1	scf7180000779538:464901-465156 +		AGTACCCCGATCGCATCATGCTCTCGTTCTCCGTGGTGCCGTCGCCAAAGGTAAGTCC-------------T----------TGTCTA------TG---------TT-------------GGC--CA--CC-----------------------------------TGCTATCGC-----------------------------------TCCTAACTGC---TACTGCC-GATCATCATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-AAAATCAGCTTACTGCCGC---GCACAATGG--CCATCAAATCAGGG------TG--TCCTC-----CGCTGAACG-------GTTGACATCGAGCTT---CCT--------------------------------CCTTTAT-----------------------------------------C------ACCGACCCGCCAGGACACAAGGACCA-------------C-C
droFic1	scf7180000453826:138854-139089 +		AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTCC-------------C----------TGTCCG------CCCTGCCCGCCTTGTC---------------CT--CC-----------------------------------TGCCATTGC-----------------------------------TC--ACC------TGCTGCA-GATCATCATCAG--C------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-GAAATCAGCTTACCGCCGC---GCACAATGG--GCAGCAAATCAGGG------TG--TCCTC-----CGCCGAACG-------GGTGACATTGAGTACGTGCCT--------------------------------CCATTTTGG----------------------------------------------------------------------------------------
droKik1	scf7180000302475:1024932-1025189 +		AATATCCGGACCGCATCATGAACTCATTCTCCGTGGTGCCTTCGCCCAAGGTAAGCAA-------------C----------G------------------------------------------------------------------------CTATA------TGCTAGCGCTTCCTGCAATCATCTCATGTCATCAGCTCCTTCGCTC--ACC------TGTCGCC-GATCCTCGTCATTGT------------------------------------------------------------------------------------GTG----------------GTTGTGACCAA--TGCAATCCGCTTAGC-GAAATCAGCTTACTGCCCCCCGGCACAGTGG--GTCGCAAATCAGAG------CC--CCGTT-----TGGCCAA----------------------------------------------------------------------------------------------ACCAAATGGTAACACTCACACATCTC------------------GGCCA-------------TTC
droAna3	scaffold_13340:21936501-21936660 -		AATATCCCGACCGCATCATGAACTCTTTCTCCGTGGTGCCCTCGCCAAAGGTAAGCTC-------------T----------CACCTG----------------------T-------ATAGCGGCA--CCTGGCCTA------------------------------------------------------------------------------C------TCCGCCA-AATCATTATCGG---------------------------------------------------------------------------------------GGG----------------GTCAGGACGAA--TACAATCCGCTTAGC-AAAATCAGCTTACAGCCAC---GCACAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396583:251168-251334 +		AATATCCCGACCGCATCATGAACTCTTTCTCCGTGGTGCCCTCGCCAAAGGTAAGCAT-------------GACCCTC---TCACCTC----------------------T-------ATAGCGGCA--CCTGGCCTG------------------------------------------------------------------------------C------TCCACCA-AATCATTATCG----------------------------------------------------------------------------------------GGG----------------GTCAGGACGTA--TACAATCCGCTTAGC-AAAATCAGCTTACAGCCAC---GCACAGTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	2:8291331-8291536 +		AGTATCCGGATCGCATTATGGTCTCCTTCTCCGTTCTGCCCTCGCCGAAGGTAAGCCT-------------CT---------CGCCTG----------------------C-------CCCCTGCCC--CCTGC--------------------------------------------------------------------------------ACC------TGCCCCAAGATCATCCTCAT--C------------------------------------------------------------------------------------AGC----------------CCCATGGCGGG--TGCAATCCGCTTAGC-CAAATCAGCTTAC-------------------------AAATTACGGG--GG-GGGGTTTTTTCGTGTGTTGC---------------CA----------------------------------------------CCA--------------CGGTGTC--------------------------------------------------------ATTGGCAATGGGT-G-G
droPer2	scaffold_0:2127128-2127334 +		AGTATCCGGATCGCATTATGGTCTCCTTCTCCGTTCTGCCCTCGCCGAAGGTAAGCCT-------------TC--------TCGCCTG----------------------C-------CCCCCGCCC--CCTGC--------------------------------------------------------------------------------CCC------TGCCGCAAGATCATCCTCAT--C------------------------------------------------------------------------------------AGC----------------CCCATGGCGGG--TGCAATCCGCTTAGC-CAAATCAGCTTAC-------------------------AAATTACGGG--G--GGTTTTTTTTCGTGTGTTG---------------CCA----------------------------------------------CCA--------------CGGTGTC--------------------------------------------------------ATTGGTAATGGGTGG-C
droWil2	scf2_1100000004921:999708-999867 -		AATATCCGGATCGCATCATGAATTCATTCTCTGTGGTGCCATCGCCCAAGGTAAGCCT-------------ATA----GTA-----------------------------CCC-------AGGACTA--ACTAT--------------------------------------------------------------------------------AA-------TAGATCAGCATCATCCTCAT--T------------------------------------------------------------------------------------ATG-------------G--TCCATGACCAAATTGCAAGCCGCTTAAATCAAATCAGCTTAG-GTCAT---GCACAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13047:15788800-15788987 +		AGTATCCGGATCGCATCATGAACTCCTTTTCGGTGGTGCCCTCACCCAAGGTAAGTAC-------------A----------CACCT-------------------TTG-C-------ACAGCTGCA--------------------GATCACACGCACGCACGCACA-------TT--CGCAC-------------------------------------------------------------T------------------------------------------------------------------------------------GC----TCTCATG------ATTTTGGCCAG--GGCAATCCGCTTAGG-CAAATCAGCTTAG--------------------CCAACAAATTAG----------------------------------------------------TTTAGCG--------------------------------CCGTTTGTAA--------------------------------------------------------------------GCC-------------G-C
droMoj3	scaffold_6540:19299242-19299392 +		AATATCCGGATCGCATTATGAACTCCTTCTCGGTGGTGCCCTCACCCAAGGTAAGCGT-------------T----------CGCATT----------------------------CCATTTCTATATATC-----------------AT--CCCATTCACACGCACA------------GCCC-------------------------------------------------------------C------------------------------------------------------------------------------------CC----TCCCATGATTTTGGGC-TGGC------AAAATCCGCTTAGC-CAAATCAGCTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_14830:4226127-4226375 -		AGTATCCGGATCGCATCATGAACTCCTTTTCGGTGGTGCCCTCACCCAAGGTAAGTAC-------------ACC----GTA-----------------------------CGCACTTCGCAA----------------------------------------------------------------------------------------------------AT---GCA-GATCATTAGCAT--GCACAGAAAATACAACAAATACATACACACACCCAGCCACACCCACGCCCACTCACATGGCAACCCACTTACGCACACCCTCATAACCTACACTCATG------ATGCTGGGCAG--GGCAATCCGCTTAGG-CAAATCAGCTTAGCT-CAC---ACATA--------------------------------------------------------------------------------------------------------------CAT--------------------ATTTGG-------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTGAGTGC-------------C----------AG-----------------------------------------------------------CGCACGTCCAACTTACCCACCCATG-------AT--AACGA---------------------------------------TGCAGCA-TATCATTATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGGTGCCGGGAAATCAGGG------TGTGTCCTCTGCTCTGCTGAACG--GGGCAGTTGACATCGAGCATGTACCA--------------------------------CCATTTGGGA--------------------------------------------------------------------CCA-------------G-C	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........CGCATCATGAACTCCTTCTCCGTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GTACCCCGACCGCATCATGAACTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ACCCCGACCGCATCATGAACTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ATGAACTCCTTCTCCGTGGTGCCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CCGACCGCATCATGAACTCCTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ATGAACTCCTTCTCCGTGGTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GACGAA--TGCAATCCGCTTA............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.GTACCCCGACCGCATCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

AGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTGAGTGC-------------C----------AG-----------------------------------------------------------CGCACGTCCAACTTACCCACCCATG-------AT--AACGA---------------------------------------TGCAGCA-TATCATTATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGGTGCCGGGAAATCAGGG------TGTGTCCTCTGCTCTGCTGAACG--GGGCAGTTGACATCGAGCGTGTACCA--------------------------------CCATTTGGGA--------------------------------------------------------------------CCA-------------G-T	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
AGTACCCCGACCGCATCATGAACTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
.................ATGAACTCCTTCTCCGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
......CCGACCGCATCATGAACTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
.GTACCCCGACCGCATCATGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0
.GTACCCCGACCGCATCATGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	1

dm3

AGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTAGGTTA--------------------------------------------------------------------------------------------------------------------------GCGA-----------------------TGCTC--GCC-GGCATTGCAGCA-TATAATTATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGGTGCCAGGAAATCAGGG------TGTATCCTTTGCTCTGCTGAACG--AGGCAGTTGACATCGAGCATGTACCA--------------------------------CCATTTGGGA--------------------------------------------------------------------CCATTG-------G-GG-C	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................CTCCGTGGTGCCATCGCCCAAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATCATGAACTCCTTCTCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..TACCCCGACCGCATCATGAACTCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CCGTGGTGCCATCGCCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CTCCGTGGTGCCATCGCCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GG------TGTATCCTTTGCTCTGCTGAACG--A..........................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GTGGTGCCATCGCCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGTACCCCGACCGCATCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CCGTGGTGCCATCGCCCAAGGTATCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTGC-------------TCC----CTG-----------------------------CCCACTTG----CTA-C---------------------------------------------------------------------------------------ACT-GGCATTGCAGCA-TATCATTATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGCCGCCAGCAAATCAGGG------TGTGTCCTC------GCCGAACG----GCAGTTGACATCGAGCATGTACCA--------------------------------CCATTTTGGA--------------------------------------------------------------------CCA-------------G-C	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..TACCCCGATCGCATCATGAACTCGTTCTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	30	1	9.00	9	0	0	0	0	0	0	9
.................ATGAACTCGTTCTCCGTGGTGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	1	0	0	0	0	1	0
...ACCCCGATCGCATCATGAACTCGTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.....................ACTCGTTCTCCGTGGTGCCCTCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
..............ATCATGAACTCGTTCTCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.GTACCCCGATCGCATCATGAACTCGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...........CGCATCATGAACTCGTTCTCCGTGGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
.GTACCCCGATCGCATCATGAACTCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
.....................ACTCGTTCTCCGTGGTGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
............GCATCATGAACTCGTTCTCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................CAGCTTACTGCCGC---GCACAATGCCGCCA.....................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
....................AACTCGTTCTCCGTGGTGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCA.....................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
.GTACCCCGATCGCATCATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
........................CGTTCTCCGTGGTGCCCTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...................GAACTCGTTCTCCGTGGTGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..............ATCATGAACTCGTTCTCCGTGGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0

droYak3

AGTACCCCGACCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTGC-------------TCC----ACA-----------------------------TCCAATTG------CCC---------------------------------------------------------------------------------------AAC-GGCATTGCAGCA-TATCATTATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGCTGCCAGCAAATCGGGG------TGTGTCCTC-----TGCTGAACG----CCAGTTGACATCGACCATGTACCATCTACCAACTACCAACTGCCATCAACCATGTAGCATTTTGGA--------------------------------------------------------------------CCA-------------G-C	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................CATGAACTCGTTCTCCGTGGTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....CCCCGACCGCATCATGAACTCGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................CTCGTTCTCCGTGGTGCCCTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................ATGAACTCGTTCTCCGTGGTGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............GCATCATGAACTCGTTCTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............ATCATGAACTCGTTCTCCGTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........CGCATCATGAACTCGTTCTCCGTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............GCATCATGAACTCGTTCTCCGTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............CATCATGAACTCGTTCTCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................GAACTCGTTCTCCGTGGTGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................CTCCGTGGTGCCCTCGCCGAAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................CGTTCTCCGTGGTGCCCTCGCCGAAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........ACCGCATCATGAACTCGTTCTCCGTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................CATGAACTCGTTCTCCGTGGTGCCCTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AATCAGCTTACTGCCGC---GCACAATGC..........................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCAAAGGTAAGTTC-------------T----------CA---------------------TTGAC---------------AA----------------CCCA-----AACCTACC------TGCCAAAGCA----------------------------------TC--ACC------TGCAACA-GATCATTATCATT-T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-AAAATCAGCTTACTGCCGT---GGAGAATGG--GCAGCAAATCAGGGT--G--TGTGTCCTC-----TGCTGAACA----CCGGTTGACATCGACGACGTGCCA--------------------------------CCATTTTG---------------------GG--------------------------------------------GGACCA-------------C-C	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCACCCAAGGTAAGTGGGAGCTGCTTCTCCT----------TGTTCA------CCTTGTCCACCTTTTC---------------AA--CCT-GCCTGACCA----------------------------------------------------------------------------GCCAAT---GCA-GATCATTATCGT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGCACAAATCAGCTTACTGCCAC---GCACAATGGGCGCAGCAAATCAGGACCTGTGTGTGTCCTC-----TG--------------GTTGACATCGCCAGTGAGCCA--------------------------------CCAC-----------CACCTCCTCTTTAGGAG-------GAAT-----C------CCC------------------GACCA-------------GTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGTACCCCGATCGGATCATGAACTCGTTCTCCGTGGTTCCCTCGCCGAAGGTAAGTTT-------------GCC-------TCACC-------------------TTTTC---------------AA--CC----------AGCCAATGG------------------CCAATGC-----------------------------------TC--ACC------TGCAGCA-GATCATTATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGCACAAATCAGCTTACTGCCAC---GCACAATGGGCGCAGCAAATCAGGGT--GTGTGTGTCCTC-----TG--------------GTTGACATCC---TT-CTCCT--------------------------------CCGTTTT-------------------TTGGGG-------G-------------------------------ACGGGGACCA-------------A-C	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGTACCCCGATCGCATCATGCTTTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTGC-------------T----------TGTCTGCTTGTCTA---------TT-------------GGCTGCA--CC-----------------------------------TGCCATCGC-----------------------------------TTCTACC------TGCTACA-GATCATCATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-AAAATCAGCTTATTGCCGC---GCACAATGG--CGAGGAAATCATGG------TG--TCCTT-----CGTTGAACGTTGAACGGTTGACAACGAGGT-GGG-CT--------------------------------TCTTTAT-ATATGGC-TCTATAT-ATTTGGG-ACGCAATGGATCCACCCATGGA--CC------------------GACCA-------------C-C	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGTACCCCGATCGCATCATGCTCTCGTTCTCCGTGGTGCCGTCGCCAAAGGTAAGTCC-------------T----------TGTCTA------TG---------TT-------------GGC--CA--CC-----------------------------------TGCTATCGC-----------------------------------TCCTAACTGC---TACTGCC-GATCATCATCAT--T------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-AAAATCAGCTTACTGCCGC---GCACAATGG--CCATCAAATCAGGG------TG--TCCTC-----CGCTGAACG-------GTTGACATCGAGCTT---CCT--------------------------------CCTTTAT-----------------------------------------C------ACCGACCCGCCAGGACACAAGGACCA-------------C-C	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTCC-------------C----------TGTCCG------CCCTGCCCGCCTTGTC---------------CT--CC-----------------------------------TGCCATTGC-----------------------------------TC--ACC------TGCTGCA-GATCATCATCAG--C------------------------------------------------------------------------------------GTG----------------GTCATGACGAA--TGCAATCCGCTTAGC-GAAATCAGCTTACCGCCGC---GCACAATGG--GCAGCAAATCAGGG------TG--TCCTC-----CGCCGAACG-------GGTGACATTGAGTACGTGCCT--------------------------------CCATTTTGG----------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AATATCCGGACCGCATCATGAACTCATTCTCCGTGGTGCCTTCGCCCAAGGTAAGCAA-------------C----------G------------------------------------------------------------------------CTATA------TGCTAGCGCTTCCTGCAATCATCTCATGTCATCAGCTCCTTCGCTC--ACC------TGTCGCC-GATCCTCGTCATTGT------------------------------------------------------------------------------------GTG----------------GTTGTGACCAA--TGCAATCCGCTTAGC-GAAATCAGCTTACTGCCCCCCGGCACAGTGG--GTCGCAAATCAGAG------CC--CCGTT-----TGGCCAA----------------------------------------------------------------------------------------------ACCAAATGGTAACACTCACACATCTC------------------GGCCA-------------TTC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AATATCCCGACCGCATCATGAACTCTTTCTCCGTGGTGCCCTCGCCAAAGGTAAGCTC-------------T----------CACCTG----------------------T-------ATAGCGGCA--CCTGGCCTA------------------------------------------------------------------------------C------TCCGCCA-AATCATTATCGG---------------------------------------------------------------------------------------GGG----------------GTCAGGACGAA--TACAATCCGCTTAGC-AAAATCAGCTTACAGCCAC---GCACAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................TTCTCCGTGGTGCCCTCGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	3	0	0	0	0	1
.................ATGAACTCTTTCTCCGTGGTGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	3	1	0	0	0	0
................................GTGGTGCCCTCGCCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.................ATGAACTCTTTCTCCGTGGTGCCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
......................CTCTTTCTCCGTGGTGCCCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................................CGCCAAAGGTAAGCTC-------------T----------CAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
AATATCCCGACCGCATCATGAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.ATATCCCGACCGCATCATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.ATATCCCGACCGCATCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.......................TCTTTCTCCGTGGTGCCCTCGCCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................CTTTCTCCGTGGTGCCCTCGCCAAAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.............CATCATGAACTCTTTCTCCGTGGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
................CATGAACTCTTTCTCCGTGGTGCCCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.........ACCGCATCATGAACTCTTTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................ATGAACTCTTTCTCCGTGGTGCCCTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
................CATGAACTCTTTCTCCGTGGTGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................GTAAGCTC-------------T----------CACCTG----------------------T-------ATAGCGGCA--CCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
...................GAACTCTTTCTCCGTGGTGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..............................CCGTGGTGCCCTCGCCAAAGGTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	1

droBip1

AATATCCCGACCGCATCATGAACTCTTTCTCCGTGGTGCCCTCGCCAAAGGTAAGCAT-------------GACCCTC---TCACCTC----------------------T-------ATAGCGGCA--CCTGGCCTG------------------------------------------------------------------------------C------TCCACCA-AATCATTATCG----------------------------------------------------------------------------------------GGG----------------GTCAGGACGTA--TACAATCCGCTTAGC-AAAATCAGCTTACAGCCAC---GCACAGTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGTATCCGGATCGCATTATGGTCTCCTTCTCCGTTCTGCCCTCGCCGAAGGTAAGCCT-------------CT---------CGCCTG----------------------C-------CCCCTGCCC--CCTGC--------------------------------------------------------------------------------ACC------TGCCCCAAGATCATCCTCAT--C------------------------------------------------------------------------------------AGC----------------CCCATGGCGGG--TGCAATCCGCTTAGC-CAAATCAGCTTAC-------------------------AAATTACGGG--GG-GGGGTTTTTTCGTGTGTTGC---------------CA----------------------------------------------CCA--------------CGGTGTC--------------------------------------------------------ATTGGCAATGGGT-G-G	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................GTTCTGCCCTCGCCGAAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................TATGGTCTCCTTCTCCGTTCTGCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGTATCCGGATCGCATTATGGTCTCCTTCTCCGTTCTGCCCTCGCCGAAGGTAAGCCT-------------TC--------TCGCCTG----------------------C-------CCCCCGCCC--CCTGC--------------------------------------------------------------------------------CCC------TGCCGCAAGATCATCCTCAT--C------------------------------------------------------------------------------------AGC----------------CCCATGGCGGG--TGCAATCCGCTTAGC-CAAATCAGCTTAC-------------------------AAATTACGGG--G--GGTTTTTTTTCGTGTGTTG---------------CCA----------------------------------------------CCA--------------CGGTGTC--------------------------------------------------------ATTGGTAATGGGTGG-C	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................CTCCGTTCTGCCCTCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
.................ATGGTCTCCTTCTCCGTTCTGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................CTCCTTCTCCGTTCTGCCCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................CTCCTTCTCCGTTCTGCCCTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.GTATCCGGATCGCATTATGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0

droWil2

AATATCCGGATCGCATCATGAATTCATTCTCTGTGGTGCCATCGCCCAAGGTAAGCCT-------------ATA----GTA-----------------------------CCC-------AGGACTA--ACTAT--------------------------------------------------------------------------------AA-------TAGATCAGCATCATCCTCAT--T------------------------------------------------------------------------------------ATG-------------G--TCCATGACCAAATTGCAAGCCGCTTAAATCAAATCAGCTTAG-GTCAT---GCACAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....CCGGATCGCATCATGAATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	7.00	7	7	0	0	0	0
AATATCCGGATCGCATCATGAATTCATTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	4.00	4	4	0	0	0	0
.................ATGAATTCATTCTCTGTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.ATATCCGGATCGCATCATGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..TATCCGGATCGCATCATGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...ATCCGGATCGCATCATGAATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
....TCCGGATCGCATCATGAATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
..TATCCGGATCGCATCATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
AATATCCGGATCGCATCATGAATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
....................AATTCATTCTCTGTGGTGCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0

droVir3

AGTATCCGGATCGCATCATGAACTCCTTTTCGGTGGTGCCCTCACCCAAGGTAAGTAC-------------A----------CACCT-------------------TTG-C-------ACAGCTGCA--------------------GATCACACGCACGCACGCACA-------TT--CGCAC-------------------------------------------------------------T------------------------------------------------------------------------------------GC----TCTCATG------ATTTTGGCCAG--GGCAATCCGCTTAGG-CAAATCAGCTTAG--------------------CCAACAAATTAG----------------------------------------------------TTTAGCG--------------------------------CCGTTTGTAA--------------------------------------------------------------------GCC-------------G-C	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................CTCCTTTTCGGTGGTGCCCTCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5
.................ATGAACTCCTTTTCGGTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............ATCATGAACTCCTTTTCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........ATCGCATCATGAACTCCTTTTCGGTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................TTTCGGTGGTGCCCTCACCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GTATCCGGATCGCATCATGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CATGAACTCCTTTTCGGTGGTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GTATCCGGATCGCATCATGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TTCGGTGGTGCCCTCACCCAAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GTATCCGGATCGCATCATGAACTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CGCATCATGAACTCCTTTTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AATATCCGGATCGCATTATGAACTCCTTCTCGGTGGTGCCCTCACCCAAGGTAAGCGT-------------T----------CGCATT----------------------------CCATTTCTATATATC-----------------AT--CCCATTCACACGCACA------------GCCC-------------------------------------------------------------C------------------------------------------------------------------------------------CC----TCCCATGATTTTGGGC-TGGC------AAAATCCGCTTAGC-CAAATCAGCTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................TATGAACTCCTTCTCGGTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...ATCCGGATCGCATTATGAACTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............CATTATGAACTCCTTCTCGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...ATCCGGATCGCATTATGAACTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
AATATCCGGATCGCATTATGAACTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...........CGCATTATGAACTCCTTCTCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..TATCCGGATCGCATTATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...ATCCGGATCGCATTATGAACTCCTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............ATTATGAACTCCTTCTCGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................TTCTCGGTGGTGCCCTCACCCAAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................ATGAACTCCTTCTCGGTGGTGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
AATATCCGGATCGCATTATGAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................ATGAACTCCTTCTCGGTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................CTCCTTCTCGGTGGTGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droGri2

AGTATCCGGATCGCATCATGAACTCCTTTTCGGTGGTGCCCTCACCCAAGGTAAGTAC-------------ACC----GTA-----------------------------CGCACTTCGCAA----------------------------------------------------------------------------------------------------AT---GCA-GATCATTAGCAT--GCACAGAAAATACAACAAATACATACACACACCCAGCCACACCCACGCCCACTCACATGGCAACCCACTTACGCACACCCTCATAACCTACACTCATG------ATGCTGGGCAG--GGCAATCCGCTTAGG-CAAATCAGCTTAGCT-CAC---ACATA--------------------------------------------------------------------------------------------------------------CAT--------------------ATTTGG-------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_18099

3r:23197660-23197809 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-37.5	-37.5	-37.0