ID:

dsi_18098

 Coordinate:

3r:10170242-10170295 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10169865_10170241_+]; CDS [3r_10169865_10170241_+]; CDS [3r_10170296_10170548_+]; exon [3r_10170296_10170548_+]; intron [3r_10170242_10170295_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------##################################################
GATACCGACCAAACGACTGGAATAACAACAAGTGCCGCAAGTTGTCATCTGTGTGTTTCATTCGAAATAAGAGAATTTTGTTCTTACTTGTTTATACATTTCAGGATCACCTAAAGTCTCCCAAGGAGACACGATATGCCATTTACAAGAAAAT
**************************************************((((((........((((((((((((...)))))..))))))))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.ATACCGATGAAACGACTGG...................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0
......................................................................................................................TCCCAAGGAGACACGAT................... 17 0 1 1.00 1 1 0 0 0 0
.....................................................................................................CTGGATCACCTAAAGT..................................... 16 1 2 0.50 1 0 1 0 0 0
............................................................................TTTGATCTTACTTGTGTA............................................................ 18 2 14 0.43 6 0 2 4 0 0
...................................................................TAAGAGAATTTAGTTC....................................................................... 16 1 4 0.25 1 0 1 0 0 0
.................................................................................................................AAGTCACCCGAGGAGACA....................... 18 2 4 0.25 1 0 1 0 0 0
.................................GCCGCAAGGTGTGATCTAT...................................................................................................... 19 3 11 0.18 2 0 2 0 0 0
..........................................................................ACTTTGATCTTACTTGTGTA............................................................ 20 3 13 0.15 2 0 0 1 0 1
.................................GCCGCAAGGTGTGATCT........................................................................................................ 17 2 14 0.14 2 0 2 0 0 0
.............................................................................................................CCTAGAATCTCCCAAGG............................ 17 2 10 0.10 1 0 0 0 1 0
.........................................................................AACTTTGATCTTACTTGTGT............................................................. 20 3 14 0.07 1 0 1 0 0 0

Anti-sense strand reads

CTATGGCTGGTTTGCTGACCTTATTGTTGTTCACGGCGTTCAACAGTAGACACACAAAGTAAGCTTTATTCTCTTAAAACAAGAATGAACAAATATGTAAAGTCCTAGTGGATTTCAGAGGGTTCCTCTGTGCTATACGGTAAATGTTCTTTTA
**************************************************((((((........((((((((((((...)))))..))))))))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M023
head
.........................................................................................................TAGTGGCTGTCAGAGGGATC............................. 20 3 3 0.33 1 1 0 0
..........................TTGTTCCCGGGGTTCAAC.............................................................................................................. 18 2 4 0.25 1 0 1 0
.....................................................................................................GTCCTACTGGATTTCATA................................... 18 2 6 0.17 1 0 0 1
...............................................................................................TGTCATGTCCTAGTGG........................................... 16 2 20 0.05 1 1 0 0

Generated: 04/24/2015 at 10:35 AM