ID:

dsi_18094

Coordinate:

2r:5539488-5539637 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-31.3	-31.1

Flybase annnotation

intergenic

No Repeatable elements found

mature

star

Sense Strand Reads

TGTCAATTACGCGCCAACGACTTTCAACGCCTTTCCCAAAGTATGCCAAAAAGCAAAGTGTGGAGTAATTACGAGGCATTACTCAAATGGGAATGGGAATATAAATTGATATATACCCGACCACGTCGCATCTGCCGCGCTCCACTCTCCACACTCAAGTAAACTCAGTCAACACATCCCGTATCCTTCTCTATTCGCAGGACGAGGCGCGCAAGAAGGCGGCGTCCACGTATCTCGTCGAGGGCTCGGA ************************************************......(((((((((......((.((((.........(((...((((.(((((......))))).)))).))).........)))).)).......))))))))).............................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	SRR618934 dsim w501 ovaries	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M025 embryo	SRR553485 Chicharo_3 day-old ovaries
....................................................................................................GTAAATTGATGTAGACCCGA..................................................................................................................................	20	3	5	28.20	141	105	32	0	3	0	0	1	0
.....................................................................................................TAAATTGATGTAGACCCGA..................................................................................................................................	19	2	3	3.67	11	8	2	0	1	0	0	0	0
......................................................................................................AAATTGATGTAGACCCGA..................................................................................................................................	18	2	9	2.67	24	18	3	0	3	0	0	0	0
...................................................................................................................................................................................................................................ACGTATCTCGTCGAGGGC.....	18	0	1	1.00	1	0	1	0	0	0	0	0	0
....................................................................................................................CCGTCCACTTCGCATCTGCGG.................................................................................................................	21	3	2	1.00	2	0	0	0	0	2	0	0	0
..............................................................................................................................................................................................................................CGTCCACGTATCTCGTCGAGGGCTCG..	26	0	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................ATGGGAATATAAATTG..............................................................................................................................................	16	0	4	0.75	3	0	0	3	0	0	0	0	0
.............................................................................................................GATATACCCAACCACGTGGCA........................................................................................................................	21	3	2	0.50	1	0	0	1	0	0	0	0	0
..............................................................................................................ATATACCCAACCGCGTGGCA........................................................................................................................	20	3	6	0.50	3	0	0	3	0	0	0	0	0
......................................................TAAATGTGGAGTAGTTACGAGG..............................................................................................................................................................................	22	3	2	0.50	1	0	0	0	0	0	1	0	0
.....................................................................................................TAAATTGATGTAGACCCG...................................................................................................................................	18	2	5	0.40	2	2	0	0	0	0	0	0	0
............................................................................................ATGGGAATATAAATT...............................................................................................................................................	15	0	6	0.33	2	0	0	2	0	0	0	0	0
................................................................................................................................................................................................ATTCGCTGGACCTGGCGCGC......................................	20	3	9	0.22	2	0	0	2	0	0	0	0	0
....................................................................................................GTAAATTGATGTATACCC....................................................................................................................................	18	2	9	0.22	2	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................ACGTATCTCGTCGAGGCGTA...	20	3	5	0.20	1	0	0	1	0	0	0	0	0
..................................................................................................................................................................................TCGTATCCTTCTCTA.........................................................	15	1	8	0.13	1	0	0	0	0	0	1	0	0
.......................................................AAGTGTGGAGGAATT....................................................................................................................................................................................	15	1	16	0.06	1	0	0	0	0	0	0	0	1
..........................................................................................................................................................TCAAGTAAGCGCGGTCAAC.............................................................................	19	3	20	0.05	1	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................GTCCGAGGCGCGCATGAAG................................	19	3	20	0.05	1	0	0	1	0	0	0	0	0
............GCCAACGACATACCACGC............................................................................................................................................................................................................................	18	3	20	0.05	1	1	0	0	0	0	0	0	0

Anti-sense strand reads

ACAGTTAATGCGCGGTTGCTGAAAGTTGCGGAAAGGGTTTCATACGGTTTTTCGTTTCACACCTCATTAATGCTCCGTAATGAGTTTACCCTTACCCTTATATTTAACTATATATGGGCTGGTGCAGCGTAGACGGCGCGAGGTGAGAGGTGTGAGTTCATTTGAGTCAGTTGTGTAGGGCATAGGAAGAGATAAGCGTCCTGCTCCGCGCGTTCTTCCGCCGCAGGTGCATAGAGCAGCTCCCGAGCCT ************************************************......(((((((((......((.((((.........(((...((((.(((((......))))).)))).))).........)))).)).......))))))))).............................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	M053 female body	M024 male body	GSM343915 embryo	M023 head	SRR618934 dsim w501 ovaries	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis
.......................................................................................................................................................................................ATGAAAAGATAAGCGTCGTGCT.............................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............GGTTGGTGAATGTTGTGGAA.........................................................................................................................................................................................................................	20	3	20	0.45	9	0	0	0	3	3	2	0	1	0	0	0
.............AGTTGGTGAATGTTGCGGAA.........................................................................................................................................................................................................................	20	3	9	0.33	3	0	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................CCGCGCGAGGTGAGA......................................................................................................	15	1	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................AGGCTACGTAATGAGT.....................................................................................................................................................................	16	2	20	0.15	3	2	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................CGGCGCGAGGTGAGTGGC...................................................................................................	18	2	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GAGCAGCTCGCGAGC..	15	1	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GAGTTGTGTAAGGCATA..................................................................	17	2	17	0.06	1	0	0	0	0	0	0	1	0	0	0	0
.....................AAAGTTGCGGAAAGT......................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0
.............GGTTGGTGAATGTTGAGGAA.........................................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
.....................................................................AGGATCCGTAATGAGT.....................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

Generated: 04/23/2015 at 04:31 PM