ID:

dsi_18063

 Coordinate:

3r:4348026-4348232 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4347879_4348025_-]; CDS [3r_4347879_4348025_-]; CDS [3r_4348233_4348329_-]; exon [3r_4348233_4348329_-]; intron [3r_4348026_4348232_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCTTCCTCAAGCCCACATCTTCCTACCTCCAGGAGGGTCAGCCCATTGTGGTGAGTTCTACAGAGAACTATTTAAGATATCATTAAGATAGTAACAAGATAGCAAAAGTCCATAAACTATAGAGCAAGCGCCTTTGGACTCTTATAAAAAGATATAAATAAATAACATTTAACAATTCATTTGGAATTGAGTATACTTGTGAATTCATAATTTTAATTAAAAATCCCTATTGTAATTTAAACTTTGTATTCCCCCAGTTACCCAAAGTCTTTACCAAGGTGGCATATGAAGTGGAACTAGGCGTGGT
**************************************************((((((((.((((....((((((....((((.....))))......))))))....((((((........((.((....)))).)))))).(((((......)))))...............((((((.....)))))).......)))))))))))).................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
....................................................GAGTTCTACAGAGGACGATC........................................................................................................................................................................................................................................... 20 3 2 4.00 8 8 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TTACCAAGGTGGCATATGAAGTGGAAC.......... 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TACCAAGGTGGCATATGAAGTGGAAC.......... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................ACCAAGGTGGCATATGAAGTGGAACT......... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................GTTACCCAAAGTCTTTACCAAGGT........................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TTTACCAAGGTGGCATATGAAGTGGAAC.......... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................ACCAAGGTGGCATATGAAGTGGAACTA........ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................CATATGAAGTTGAACTAGGCGTGGT 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................AGAGTTCTACAGAGGACGAT............................................................................................................................................................................................................................................ 20 3 2 1.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................ATATGAAGTGGAACTAGGC..... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TTTACCAAGGTGGCATATGAAGTGGA............ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................TGGCATATGAAGTGGAACTAGGCGT... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................AGTTCTACAGAGGACGATC........................................................................................................................................................................................................................................... 19 3 11 0.73 8 6 0 0 0 0 0 0 2 0
.............AACATCTTAGTACCTCCAGGA................................................................................................................................................................................................................................................................................. 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0
......................................................GTTCTACAGAGGACGATC........................................................................................................................................................................................................................................... 18 3 20 0.40 8 7 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................................GTGGAACTAGGCGTGC. 16 1 3 0.33 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................GGTGGAACTAGGCGTG.. 16 1 3 0.33 1 0 0 1 0 0 0 0 0 0
................................................................................................................TAAACTATACAGCAGGAGCCTTT............................................................................................................................................................................ 23 3 3 0.33 1 0 0 1 0 0 0 0 0 0
.........................................CCCATTGTGGTTAGTACT........................................................................................................................................................................................................................................................ 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0
....................................GTCTGTCCATTGTTGTGAGT........................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 1
...................................................AGAGTTCTACAGAGGACGA............................................................................................................................................................................................................................................. 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................ATGTGGAACTAGGCTTG.. 17 2 15 0.07 1 0 0 0 0 0 0 0 0 1
...................................................................................................................................CTTTGGAATCTTATA................................................................................................................................................................. 15 1 16 0.06 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................GAATTGAGTATAGTT............................................................................................................. 15 1 17 0.06 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................GACTCGTATAAAAAG............................................................................................................................................................ 15 1 18 0.06 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................CGTATTGTAATTTAAA.................................................................. 16 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TGTGGAACTAGGCGCG.. 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AGAAGGAGTTCGGGTGTAGAAGGATGGAGGTCCTCCCAGTCGGGTAACACCACTCAAGATGTCTCTTGATAAATTCTATAGTAATTCTATCATTGTTCTATCGTTTTCAGGTATTTGATATCTCGTTCGCGGAAACCTGAGAATATTTTTCTATATTTATTTATTGTAAATTGTTAAGTAAACCTTAACTCATATGAACACTTAAGTATTAAAATTAATTTTTAGGGATAACATTAAATTTGAAACATAAGGGGGTCAATGGGTTTCAGAAATGGTTCCACCGTATACTTCACCTTGATCCGCACCA
**************************************************((((((((.((((....((((((....((((.....))))......))))))....((((((........((.((....)))).)))))).(((((......)))))...............((((((.....)))))).......)))))))))))).................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 O001
Testis
..........................................GGTAACACCACTCAAGATGTC.................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................GGTAGCACCACTCAAG......................................................................................................................................................................................................................................................... 16 1 4 0.25 1 0 1 0 0 0 0 0 0 0
..........................................GGGATCAGCACTCAAGATGT..................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................ATGAGGGGGTCTTTGGGTTTC........................................ 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0
......................................................CAAGATGGCTCTTGA.............................................................................................................................................................................................................................................. 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................AGGGGGCCAATGGCTTT......................................... 17 2 8 0.13 1 0 0 1 0 0 0 0 0 0
..................GAAGGATGGAGGTCT.................................................................................................................................................................................................................................................................................. 15 1 9 0.11 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................AGGGGGCCAATGGCTT.......................................... 16 2 20 0.10 2 0 0 2 0 0 0 0 0 0
.............................................................................................................................................AAAATTCTTCTATATTTTTTTAT............................................................................................................................................... 23 3 11 0.09 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................AAAATGAATTTTTAGGGGTAT............................................................................ 21 3 15 0.07 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................AAGCTGAGATTATTTTTC............................................................................................................................................................ 18 2 16 0.06 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................TTAAATTAGAAACATA.......................................................... 16 1 20 0.05 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................TTCATTGTTAGGGATAA............................................................................ 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0
.....................................................GCAAGATGGCTCTTGA.............................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Generated: 04/24/2015 at 02:04 AM