ID:

dsi_18057

 Coordinate:

4:197824-197973 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.1 -8.4

Flybase annnotation

CDS [4_197974_198640_+]; exon [4_197974_198640_+]; intron [4_194974_197973_+]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGCGGACAGTTCGACTCGGCTATTGATCCTGATCAAGAATATAGTATATATGGCTATATAGAATATGTTCGGAAACGAATTTAGTATACCCTCTTATTCTACTATAAGGACTATCGGACTAAAGGATTATTATGGCTTAATGTGCTAGTGTACTGCGCTGAAGTTACTGACTAATTATTACAATATATTAATATTTACAGAGACTTTGTACCAAAAAATAATTTACCTTTAGGCATTGATGTCCATAATA
***************************************************************************************************************.............((((((((((((((...((((.((....))))))..)))))).))).)))))...*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M053
female body
 O002
Head
 M024
male body
.....................ATTGATCCTGCTCAAGAATATAGTA............................................................................................................................................................................................................ 25 1 1 5.00 5 4 1 0 0 0 0 0 0 0 0
..........TCGACTCGGCTATTGATCCTGATCAAGA.................................................................................................................................................................................................................... 28 0 20 2.10 42 0 0 41 0 0 1 0 0 0 0
...............................................................................................................TATCGGACTAAAGGATTATTATGGC.................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGCGCTGAAGTTACTGACTAATTATT....................................................................... 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
................................................TATGGCTATATAGAATATGTTCGGA................................................................................................................................................................................. 25 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0
..........TCGACTCGGCTATTGATCCTGATC........................................................................................................................................................................................................................ 24 0 20 1.50 30 2 0 23 2 0 0 0 3 0 0
.....................ATTGATCCTGCTCAAGAATATAGTATA.......................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................TCGGACTAAAGGATTATTATGGCTTAATG............................................................................................................ 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................ATATATGGCTATATAGAATATGTTCGG.................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................TGGCTATATAGAATATGTTCGGAAACGAA........................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TATCGGACTAAAGGATTATTATGGCT................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................TGGCTATATAGAATATGTTCGGAAACGAATT......................................................................................................................................................................... 31 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................TATATAGAATATGTTCGGAAACGAATT......................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................TATATGGCTATATAGAATATGTTCGG.................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TACTGCGCTGAAGTTACTGACTAATTAT........................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............TCGGCTATTGATCCTGATCAAGAA................................................................................................................................................................................................................... 24 0 20 0.90 18 0 7 0 0 6 5 0 0 0 0
..........TCGACTCGGCTATTGATCCTGAT......................................................................................................................................................................................................................... 23 0 20 0.60 12 0 0 11 1 0 0 0 0 0 0
...............TCGGCTATTGATCCTGATCAAG..................................................................................................................................................................................................................... 22 0 20 0.35 7 0 7 0 0 0 0 0 0 0 0
...............TCGGCTATTGATCCTGATCAAGAAT.................................................................................................................................................................................................................. 25 0 20 0.30 6 0 6 0 0 0 0 0 0 0 0
..........TCGACTCGGCTATTGATCCTGATCAAGAA................................................................................................................................................................................................................... 29 0 20 0.30 6 2 4 0 0 0 0 0 0 0 0
...............................................................TATGTTCGGAAGCGA............................................................................................................................................................................ 15 1 7 0.29 2 0 1 0 0 0 1 0 0 0 0
...........CGACTCGGCTATTGATCCTGATCAA...................................................................................................................................................................................................................... 25 0 20 0.25 5 0 0 0 0 0 0 5 0 0 0
...............TCGGCTATTGATCCTGATCAAGA.................................................................................................................................................................................................................... 23 0 20 0.25 5 0 0 0 0 4 0 0 1 0 0
............GACTCGGCTATTGATCCTGAT......................................................................................................................................................................................................................... 21 0 20 0.20 4 0 0 0 0 4 0 0 0 0 0
...............TCGGCTATTGATCCTGATCAAGAATA................................................................................................................................................................................................................. 26 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGCAATATATTAATATTTA..................................................... 19 1 8 0.13 1 0 0 0 0 0 0 0 0 1 0
..........TCGACTCGGCTATTGATCCTG........................................................................................................................................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 1 0 1 0 0
..........TCGACTCGGCTATTGATCCTGATCAAG..................................................................................................................................................................................................................... 27 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0
.....................ATTGATCCTGATCAAGAATAT................................................................................................................................................................................................................ 21 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..............CTCGGCTATTGATCCTGATCAAGAA................................................................................................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..........TCGACTCGGCTATTGATCCT............................................................................................................................................................................................................................ 20 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
...............TCGGCTATTGATCCTGATCAA...................................................................................................................................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0
........GTTCGACTCGGCTAATGATCCTGAT......................................................................................................................................................................................................................... 25 1 11 0.09 1 0 0 0 0 1 0 0 0 0 0
.......TGTTCGACTCGGCTATTGATCCTGATA........................................................................................................................................................................................................................ 27 2 15 0.07 1 0 0 0 0 0 1 0 0 0 0
.......AGTTCGACTCGGCTATTGATC.............................................................................................................................................................................................................................. 21 0 15 0.07 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................ACTATTTGGACTATGGGAC................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1
..........TCGACTCGGCTATTGATCCTGATCGAGA.................................................................................................................................................................................................................... 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...........CGACTCGGCTATTGATCCTGA.......................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..........TCGACTCGGCTATTGATCCTGATCAAGAAT.................................................................................................................................................................................................................. 30 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...............................................................TATGTTCGGAATCGA............................................................................................................................................................................ 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........CGACTCGGCTATTGATCCTGATCAAGAATA................................................................................................................................................................................................................. 30 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.........TTCGACTCGGCTATTG................................................................................................................................................................................................................................. 16 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..............CTCGGCTATTGATCCTGATCAAGA.................................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..............CTCGGCTATTGATCCTGATCAAGAATA................................................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........TCGACTCGGCTATTGATCC............................................................................................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................AGCGCTGAAGCTACTGACG.............................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..........TCGACTCGGCTATTGATCCTGA.......................................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...........CGACTCGGCTATTGATCCTGATCAAG..................................................................................................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...........CGACTCGGCTATTGATCCTGATC........................................................................................................................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCGCCTGTCAAGCTGAGCCGATAACTAGGACTAGTTCTTATATCATATATACCGATATATCTTATACAAGCCTTTGCTTAAATCATATGGGAGAATAAGATGATATTCCTGATAGCCTGATTTCCTAATAATACCGAATTACACGATCACATGACGCGACTTCAATGACTGATTAATAATGTTATATAATTATAAATGTCTCTGAAACATGGTTTTTTATTAAATGGAAATCCGTAACTACAGGTATTAT
***********************************************************************.............((((((((((((((...((((.((....))))))..)))))).))).)))))...*************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M053
female body
CCGCCTGTCAAGCTGAGCCGATAAC................................................................................................................................................................................................................................. 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...........................GGACGAGTTCTTATATCATAT.......................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................ATAGCCTGATTTCCTAATAAT...................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ATGTCTCTGAAACATGGTTTTTTATT............................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............TGAGCCGATAACTAGGACTAGTTCTT................................................................................................................................................................................................................... 26 0 20 0.90 18 18 0 0 0 0 0 0 0 0
.....TGTCAAGCTGAACCGATAACTAGGA............................................................................................................................................................................................................................ 25 1 3 0.67 2 0 0 0 0 1 0 1 0 0
........CAAGCTGAGCCGATAACTAGGAC........................................................................................................................................................................................................................... 23 0 8 0.63 5 0 0 2 0 0 3 0 0 0
.....TGTCAAGCTGAGCCGATAACTAGGA............................................................................................................................................................................................................................ 25 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.....TCTCAAGCTGAGCCGATGACTAGGAC........................................................................................................................................................................................................................... 26 2 4 0.50 2 0 0 2 0 0 0 0 0 0
.......TCAAGCTGAGCCGATAACTAGGAC........................................................................................................................................................................................................................... 24 0 8 0.38 3 0 0 2 0 0 1 0 0 0
..............................................................................TAAATCATACGGGAATATAAGATGA................................................................................................................................................... 25 3 3 0.33 1 0 0 0 0 1 0 0 0 0
.....TGTCAAGCTGAGCAGATAACTAGGAC........................................................................................................................................................................................................................... 26 1 3 0.33 1 0 0 1 0 0 0 0 0 0
.....TGTCAAGCTGAGCCGATGACTAGGAC........................................................................................................................................................................................................................... 26 1 4 0.25 1 0 0 1 0 0 0 0 0 0
.....TATCAAGCTGCGCCGATAACTAGGAC........................................................................................................................................................................................................................... 26 2 6 0.17 1 0 0 0 1 0 0 0 0 0
....................................................................................................................CTGATGTCCTAATAA....................................................................................................................... 15 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..................................................................................TTATAGAGGAGAATAAGATG.................................................................................................................................................... 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0
.................................................................................ATTATAAGGGTGAATAAGATG.................................................................................................................................................... 21 3 16 0.13 2 0 2 0 0 0 0 0 0 0
....................ATAACTAGGACTAGTTCTTA.................................................................................................................................................................................................................. 20 0 20 0.10 2 0 0 0 0 0 0 0 2 0
............CTGAGCCGATAACTAGGACTAGTT...................................................................................................................................................................................................................... 24 0 20 0.10 2 0 0 0 0 0 0 0 2 0
.........AATCTGAGCCGATAACTAGGACTAGTTC..................................................................................................................................................................................................................... 28 1 10 0.10 1 0 0 1 0 0 0 0 0 0
..........AGCTGAGCCGATAACTAGGACTAGTTC..................................................................................................................................................................................................................... 27 0 20 0.10 2 0 0 1 0 1 0 0 0 0
......GACAAGCTGAGCCGATAACTAGGAC........................................................................................................................................................................................................................... 25 1 10 0.10 1 0 0 0 1 0 0 0 0 0
........CAAGCTGAGCAGATAACTAGGAC........................................................................................................................................................................................................................... 23 1 15 0.07 1 0 0 1 0 0 0 0 0 0
.......TCAAGCTGAGCCGATAAC................................................................................................................................................................................................................................. 18 0 16 0.06 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAATGTCTCTGAAATAAG....................................... 20 3 19 0.05 1 0 0 0 0 0 0 1 0 0
..................CGATAACTAGGACTAGTTCTTAT................................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0
..................CGATAACTAGGACGAGTTCTTATAT............................................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0
........AAAGCTGAGCCGATAACT................................................................................................................................................................................................................................ 18 1 20 0.05 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................AATGTCTTTGAAAGATG....................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0
.................CCGATAACTAGGACTAGTTCTTATA................................................................................................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1
..............GAGCCGATAACTAGGACTAGTTC..................................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:197774-198023 + dsi_18057 GGCGG------------------ACAGTTCGACTCGGCTATTGATCCTGATCAAGAATATAG-TATATA-------------------------------------------------TGGCTATATAGAATATGTTCGGAAAC-------------------------------------------GAATTTAGTATACCCTCTTATTC--TAC-TA-TAAGGACTATCGGACTAAAGGATTATTAT-----GGCTTAATGTGCTAGTGTACTGCGCTGAAGTTACTGACTAATTATTACAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT----TAATATTTACAG-------AGACT---------TTGTACCAAAAAAT--AATTT----------------------------------------------------------------------------------------------AC------------------------------------------------------CTTTAGGCATTGATGTCCATAATA
droSec2 scaffold_30:5139-5394 + GGCGGACA------------TGGCCAGTTCGACTCGGCTATTGATCCTGATCAAGAATATAG-TATATA-------------------------------------------------TGGCTATATAGAATATGTTCGGAAAC-------------------------------------------GAATTTAGTATACCCTCTTATTC--TAC-TA-TAAGGACTATCGGACTAAAGGATTATTAT-----GGCTTAATGTGCTAGTGTACTGCGCTGAAGTTACTGACTAATTATTACAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT----TAATATTTACAG-------AGACT---------TTGTACCAAAAAAT--AATTT----------------------------------------------------------------------------------------------AC------------------------------------------------------CTTTAGGCATTGATGTCCATAATA
dm3 chr4:249335-249580 + GACGTACA------------TGGCCAGTTCGACTTGGCTATTGATCCTTATAAAGAATATTG-TATA---------------------------------------------------TGACCATATAGAACATGGTCAGAAACGCTTCCTTCT--G---GCTGTTACAGACTG----TTA---CAT------------------------------------------------AAAGGATTATCATAATCTGGCTTTATGTGTTATTCTACTGCGCTGAATTTACTGTCTAATTATTATAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT----TAATATTTACAG-------AGACT---------TTGTACCAAAAAAT--AATTT----------------------------------------------------------------------------------------------AC------------------------------------------------------CTTTAGGCATTGATGTCCATAATA
droEre2 scaffold_4512:1002408-1002645 - G---------------------GCCAGATTGACTCGGCTAGTGATCCTGATCAAGAATTTGC----------------------------------------T-AAATTTAT--------------------ATAGTCT-AAACGCTTCTTTAT--AATTTATGTTAAATTACT----TTC---AACAAATCTAGTATATCCTTTTACTC--TAG-GAGCAAGGGGTATCAAAAC------TTAATAC-----AGCTTAAAGTATCAA--------------------------------------------------------------------------------------------GTA-------------A----------------------------------------------TT------TATTTATAGGCAATAATTC--------------------------------------------------------ACCATTTCCAC-------AAAAC---------ATGTAC------------------------ATT----------------------------------------------------------------------------------AT-----------------------------------TTTTCGGAAAATGGTTCCCCT-------------------CTA
droYak3 3L:24107516-24107783 - GA----CA------------TGGCCAGATCGACTCGGCTACTGATCCTGATCAAGAATATAT----------------------------------------A-TACTTTAT--------------------ATGGTCGGAAACGCTTCCTTCT--G---CCTGTTACATACTT----TTC---AACGAATCTAGTATACCCTTTTACTC--TAC-GAGTAACGGGTATAATA---------------------------------------------------------AAAATTAA---------------------------------------------------------------------------------------------------------------------------------------------------------CAAAT------------------------------------------------------------G-------CGC--TCAAAGC----------------------------GTTCGCTGCAATCAAAGTCCACTCAATTT------------ACTAAATAATCATAATTATAATCGATACGTTTTTTATACTTTTAACTCAC------------------------------------------------------CTTTATTTATTTATATTTATTACA
droEug1 scf7180000408984:5245-5511 + GACGGACA------------TGGCTCAATCGACTCCGCTATTGATCCTGATCAAGAATTTAT----------------------------------------A-ACCTTCAT--------------------AGGGTCGGAAACGCTTCCTTCT--A---TCTGTTACATACTT----TTC---AACGAATCTAGTATACCCTTTTACTC--TAC-GAGTAACGGGTATAATT---------------------------------------------------------AAAGTGTTTTTCAAAAG------------GT-CT------A---------------------------GTAAGCAAAATATTCC-AACGAACTAAATTTAGTGCTTGAGACATGGCATAATCTGAACAGTTA-TTGTACATTAGT-----------------------------------------------------------------------------------------------------------------TAGT--GAT----------------------------------------------------------------------------------------------------------------------------------------------------TTTATTTTAAAAATTGAT----------
droBia1 scf7180000301145:78875-79169 - GGCGAACA------------TGGCTAGATCTACTCGGCTTGTGATCCTGATGAAGAATATAT----------------------------------------A-TACTTCAT--------------------GGGTTCGGAAAAGCTTCCTTCT--A---TCTATTACATATTT----TCC---GACGAATCTAGTTTACCCTTTTACTC--TAC-GAGTAACGCGTATAAAAACAAG-------------------------------------------------------------------------------AAGT-TTGGATTGATTCATT-----------------------------------------------------------------------------------------------------GGGATAAGTGCC------------ACTTTGT------------------------------TT----TGATT--ATCAA-------TATAT---------ATATTCCAAAAAAG--GTT--AAAAT----------AGGAATATCCACTAAAATTTTATAAGAAAATAC--AGAAATCGT-----------------------------------AC------------------------------------------------------TTATAGTCAATATCATCAATAATA
droTak1 scf7180000415260:218978-219239 - GA----CA------------TGGCTAGATCGACTCGGCTAGTGATCCTAATCAAGAATATAT----------------------------------------A-TACTTTAT--------------------GGGGTCGGAAACGCTTCCTTCT--A---GCTGTTACATACTT----TTG---CACGAATACAATATACCCTTTTACTC--TAC-GAGTAACGGGTATAAAAACTTG-------------------------------------------------------------------------------AATA-TCAAAATTATTT------------------------------------------------------------------------------------------------------------------------------ATAATTTGTTTTTGTTTTCTACAATTAATACTAC---ATTTAAAGAAATAAATACAGTTTTCTTAAAAT---------ATCTACCAAAAAATTTTATTT----------------------------------------------------------------------------------------------AT------------------------------------------------------TTTTAAATATT-------------
droEle1 scf7180000488937:157-379 - GACGGACA------------TGGCTAGATCGACTCTCCTTGTGATGCTGATCAAGAATATAG-TATATA------T-------------CAAGAATATATATA-TACTTTAT--------------------AGGGTCGGAAACGTCTCCTTCA--C---TGCGTTGCAAACTT----CTG---ACTGAAATTATAATACCCTCT--------GC-AA-----GGGTATGAAA---------------------------------------------------------ATAATCAATATAATTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AATATTAATG-------TGG--AGAAAGCTA--------------------------ATTTACTGTT----------------------------------------------------------------------------------------------------------------------TACGAAAAA--T-TTTCCTTT--------------------
droRho1 scf7180000779684:41434-41668 + GC------------------TGTTTAGATCGACTCGGCT-TTGACCCTGATCAAGAATACAT----------------------------------------A-TACTTTAT--------------------GGG------------------T--A---CCATTTACATACTT----TTC---CACGAATACAATATACTTTTTTACTC--TAC-AAGTAACGGTTACAAAA-C----GGGACTGAT-----GGCCTACAGTT----------------------------------------------------------------------------------------------GCGAGAATACTATCCCTAA----------------------------------------------TG------AATTCATAGTGAATAATTTTTAAATGAGGA--------------------------------------------TAAT-----------------------------TT------------------------GTTCGCTATT----------------------------------------------------------------------------------------------------------------------ATCGGCAATTAT-TTTACCCTGAAG-------------AAT
droFic1 scf7180000453872:218563-218686 - GACGGACA------------GACATAGATCAACTCGTTTGATGATCCTGATCAAGAATACATATTGACG--------------------CATTT------CCGCAAATGTATTGTATGTTGAAAAATCCAATTTTACAGCAGAAGCTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGATG-------------TAA
droKik1 scf7180000301567:27467-27677 - GA----CA------------TGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATAT----------------------------------------A-TACTTTAT--------------------AGGGTCGGAAACGTCTCCTTCA--C---TGCGTTGCAAACTT----CTG---ACTGAAATTATAATACCCTGCAA----------------GGGTATAAAT---------------------------------------------------------ATACTT---TAAATAATATAAACATTAAGA-TTA-A----------AGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTT-------CAGA------------GTCCAAAGAAGT--AATAT-------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGCCTAAAAGCATCTAAAG
droAna3 scaffold_13266:19420802-19420994 - TG------------------------TATCGACTCAGCTGTTGATGCTGATCAAGAACATATGTATATA--------------------CAAGA------ACA-TATTCTTA--------------------GGGATCGGATATGATTTCGTCT--C---CCTGTTACATACAT----TCG---CACGAATATAATATACCCTTCTTCTC--TAC-GAGTACCGGGTGACGAAAT--------AAAAC-----AGATTTTAATACTAATACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTA-------------------------------GCTAAGTAAC--TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTA
droBip1 scf7180000393413:4627-4909 + A-------------------TGGCTATATCGACTCGGCTGTTGATGCTGATCAAGAATATACATACTTT--------------------CGAAA------ATACTA-AACAA--------------------GTTGTCGGAGATGATTCCTTCT--C---TATATTACATACAT----TTATAAAAATAGTTTAACATACCCTTGAACTC--TAT-GAATACCGGTTATCAAATTATG-------------------------------------------------------------------------------AAA-TTT-A----------TGGC------------------------------------------------------------------AT-TTCTGATCAATTAATTATACGGCAGCTATGGGATATATCCC------------ACCAATG------------------------------CT----TGGTA--TGCAA-------GAACT---------GTGTGCAAAGAAAT--GAAGT----------------------------------------------------------------------------------------------AT-----------------------------------TT-----------------GTGAAAATATTGATGTGCA--CAA
dp5 4_group5:481964-482172 + GA---------------------------CGACTCGGCTATTGCTGCTGATCAAGAATATATGTACATA------------------------T------ATACTACTTTAT--------------------GGGGTCGGAAACAATTTCTTCT--G---GACGTTATACACATCCTGTTTCACCACAAATCTAATATACCAATATACTCATTTT-GAGTATTGGGTATAATA---------------------------------------------------------ATAATTATTATAATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTATTACTT-------TTGAT---------TTTTATTGAATAAT--TATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTT
droPer2 scaffold_5:4980104-4980317 + GA---------------------------CGACTCGGCTATTGCTGCTGATCAAGAATATATGTACATA--------------------CATAT------ATACTACTTTAT--------------------GGGGTCGGAAACAATTTCTTCT--G---GACGTTATACACATCCTGTTTCACTACAAATCTAATATACCAATATACTCATTTTGAAGTATTGGGTATAATA---------------------------------------------------------ATAATTATTATAATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTATTACTT-------TTGAT---------TTTTATTGAATAAT--TATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTT
droWil2 scf2_1100000004943:4022927-4023237 + GACGGACGGACAGACGGACATGGCTAGATCGACTCGGTTTTTGATCCTGATCAAGAATATAT----------------------------------------A-TACTTTGT--------------------GGGGTCGGAGATGCTTCCTTCT--G---CCTGTTACATACAT----TTT---AGCGACTTTAATATACCATTTCACCC--TAT-GGGTGTATGGTATAATG---------------------------------------------------------AACAAAATTAAAGCAGTC---------------------TAATATTTGGCTTAAATGCTACACGTATTACGTAAA-----------------------------------------------------------------------------------------------------------------------------------------------TATTATCAG------------------------------AAGATTTTGCT----------------------------------------------------------------------------------AAACTTTAAATTCATTATTAAAGAAGCTAATTAGACAAAACCAAAGTTTA--T-------A--T-GCC-TCTTTGGCAATAATATTTAAAATA
droVir3 scaffold_13047:8235459-8235649 + G----------------------TTAGAGCGACTCGGCTTTTGATGCTGATCAAGCATATAAATA-ATA--------------------------------TA-TACTTTAT--------------------GGGGTCGGAGATGCTTCCAT-------------------------------------------TATACTCCTTTAACA--GGC-GAA---------TGG----AAAGAATTGTCAT-----TTTTTGAAATGCTGAGAT-----------------------------------------------------------------------------------------------ACTGTCGTTAA----------------------------------------------TA------A---------------TTAACTAAA----A----------T----------------------AGTGTAC-----AAGATACACAG-------TATAC---------TTATGCTAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droMoj3 scaffold_6482:1482252-1482360 + GA----CA------------GGGCTAAATCGACTCAGCTCGTCGCCATGATCAAGAAAATAT----------------------------------------A-TATTCTA---------------------------------------TTCC--G---CCTGTTACATACTT----TT----AACAAACCCATTATACCCTGATTTCC--TAT-TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA
droGri2 scaffold_15081:3649153-3649349 - G---------------------GCCAGATCGAGTCGGCTACTAATGCTGATCAAGAATATGCACATATATATATATAAAGATATATATATATAA------ATA-TATATATA--------------------TATATAAATGATGATTCCTTCTCTG---CCTTTTACAC--AAC---------------TTCATTGTTCC----------------------------------AAATTATTATTAT-----TATTTTAATTAGTATTAT-----------------------------------------------------------------------------------------------TTTATTATTTA----------------------------------------------TT------A---------------T--------------------------------------------------TAT----TATTATTCACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGCGG------------------ACAGTTCGACTCGGCTATTGATCCTGATCAAGAATATAG-TATATA-------------------------------------------------TGGCTATATAGAATATGTTCGGAAAC-------------------------------------------GAATTTAGTATACCCTCTTATTC--TAC-TA-TAAGGACTATCGGACTAAAGGATTATTAT-----GGCTTAATGTGCTAGTGTACTGCGCTGAAGTTACTGACTAATTATTACAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT----TAATATTTACAG-------AGACT---------TTGTACCAAAAAAT--AATTT----------------------------------------------------------------------------------------------AC------------------------------------------------------CTTTAGGCATTGATGTCCATAATASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................TCGACTCGGCTATTGATCCTGATCAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28202.1042000000041010000000
..................................................................................................................................................................................................................................TATCGGACTAAAGGATTATTAT-----GGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000200000000
.................................................................................................................................................................................................................................................................................TGCGCTGAAGTTACTGACTAATTATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000001100000000
...................................................................TA-------------------------------------------------TGGCTATATAGAATATGTTCGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000010000010000
............................TCGACTCGGCTATTGATCCTGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24201.5030000300023200020000
....................................................................................................................................................................................................................................TCGGACTAAAGGATTATTAT-----GGCTTAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
................................................................ATATA-------------------------------------------------TGGCTATATAGAATATGTTCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
......................................................................................................................TGGCTATATAGAATATGTTCGGAAAC-------------------------------------------GAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
..................................................................................................................................................................................................................................TATCGGACTAAAGGATTATTAT-----GGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
......................................................................................................................TGGCTATATAGAATATGTTCGGAAAC-------------------------------------------GAATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3111.00100000010000000000
..........................................................................................................................TATATAGAATATGTTCGGAAAC-------------------------------------------GAATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.................................................................TATA-------------------------------------------------TGGCTATATAGAATATGTTCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
..............................................................................................................................................................................................................................................................................TACTGCGCTGAAGTTACTGACTAATTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
.................................TCGGCTATTGATCCTGATCAAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.901800000070056000000
............................TCGACTCGGCTATTGATCCTGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.6012000000011000010000
.................................TCGGCTATTGATCCTGATCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.35700000070000000000
.................................TCGGCTATTGATCCTGATCAAGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.30600000060000000000
............................TCGACTCGGCTATTGATCCTGATCAAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.30600000040200000000
.............................CGACTCGGCTATTGATCCTGATCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.25500500000000000000
.................................TCGGCTATTGATCCTGATCAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.25500010000004000000
..............................GACTCGGCTATTGATCCTGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20400000000004000000
.................................TCGGCTATTGATCCTGATCAAGAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.20400000000400000000
............................TCGACTCGGCTATTGATCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200010000010000000
............................TCGACTCGGCTATTGATCCTGATCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.10200000000000020000
.......................................ATTGATCCTGATCAAGAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200000020000000000
................................CTCGGCTATTGATCCTGATCAAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200000020000000000
............................TCGACTCGGCTATTGATCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200000000002000000
.................................TCGGCTATTGATCCTGATCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200200000000000000
.........................AGTTCGACTCGGCTATTGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07100000010000000000
.............................CGACTCGGCTATTGATCCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000001000000
............................TCGACTCGGCTATTGATCCTGATCAAGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................30200.05100000001000000000
.............................CGACTCGGCTATTGATCCTGATCAAGAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................30200.05100000010000000000
...........................TTCGACTCGGCTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
................................CTCGGCTATTGATCCTGATCAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000001000000000
................................CTCGGCTATTGATCCTGATCAAGAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000010000000000
............................TCGACTCGGCTATTGATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000010000000
............................TCGACTCGGCTATTGATCCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010000000000000
.............................CGACTCGGCTATTGATCCTGATCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010000000000000
.............................CGACTCGGCTATTGATCCTGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000010000000000
droSec2
GGCGGACA------------TGGCCAGTTCGACTCGGCTATTGATCCTGATCAAGAATATAG-TATATA-------------------------------------------------TGGCTATATAGAATATGTTCGGAAAC-------------------------------------------GAATTTAGTATACCCTCTTATTC--TAC-TA-TAAGGACTATCGGACTAAAGGATTATTAT-----GGCTTAATGTGCTAGTGTACTGCGCTGAAGTTACTGACTAATTATTACAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT----TAATATTTACAG-------AGACT---------TTGTACCAAAAAAT--AATTT----------------------------------------------------------------------------------------------AC------------------------------------------------------CTTTAGGCATTGATGTCCATAATASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................TCGACTCGGCTATTGATCCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22205.25105001050
............................TCGACTCGGCTATTGATCCTGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24201.452901280
................................................................................................................................................................................................................................................................TTAATGTGCTAGTGTACTGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
............................TCGACTCGGCTATTGATCCTGATCAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.4088000
............................TCGACTCGGCTATTGATCCTGATCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.3577000
............................TCGACTCGGCTATTGATCCTGATCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.2044000
..................................CGGCTATTGATCCTGATCAAGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000
............................TCGACTCGGCTATTGATCCTGATCAACTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0511000
..............................GACTCGGCTATTGATCCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510010
..................................CGGCTATTGATCCTGATCAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0511000
.................................TCGGCTATTGATCCTGATCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000
dm3
GACGTACA------------TGGCCAGTTCGACTTGGCTATTGATCCTTATAAAGAATATTG-TATA---------------------------------------------------TGACCATATAGAACATGGTCAGAAACGCTTCCTTCT--G---GCTGTTACAGACTG----TTA---CAT------------------------------------------------AAAGGATTATCATAATCTGGCTTTATGTGTTATTCTACTGCGCTGAATTTACTGTCTAATTATTATAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT----TAATATTTACAG-------AGACT---------TTGTACCAAAAAAT--AATTT----------------------------------------------------------------------------------------------AC------------------------------------------------------CTTTAGGCATTGATGTCCATAATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTT----------------------------------------------------------------------------------------------AC------------------------------------------------------CTTTAGGCATTGATGTCCA.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TAATCTGGCTTTATGTGTTATTCTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................AACGCTTCCTTCT--G---GCTGTTACAGACTG----...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAAAT--AATTT----------------------------------------------------------------------------------------------AC------------------------------------------------------CTTTAGGCATT.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................GTGTTATTCTACTGCGCTGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TAGAACATGGTCAGAAACGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
......................................................................................................................................................................................................................................................................TGTTATTCTACTGCGCTGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGGCATTGATGTCCA.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TAGAACATGGTCAGAAACGCTTCCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAAAAAAT--AATTT----------------------------------------------------------------------------------------------AC------------------------------------------------------CTTTAGGCAT..............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG-------AGACT---------TTGTACCAAAAAAT--AAT................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CA------------TGGCCAGTTCGACTTGGCTATTGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TCGACTTGGCTATTGATCCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.5020000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AGTTCGACTTGGCTATTGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AGTTCGACTTGGCTATTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TCGACTTGGCTATTGATCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TCGACTTGGCTATTGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
G---------------------GCCAGATTGACTCGGCTAGTGATCCTGATCAAGAATTTGC----------------------------------------T-AAATTTAT--------------------ATAGTCT-AAACGCTTCTTTAT--AATTTATGTTAAATTACT----TTC---AACAAATCTAGTATATCCTTTTACTC--TAG-GAGCAAGGGGTATCAAAAC------TTAATAC-----AGCTTAAAGTATCAA--------------------------------------------------------------------------------------------GTA-------------A----------------------------------------------TT------TATTTATAGGCAATAATTC--------------------------------------------------------ACCATTTCCAC-------AAAAC---------ATGTAC------------------------ATT----------------------------------------------------------------------------------AT-----------------------------------TTTTCGGAAAATGGTTCCCCT-------------------CTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
GA----CA------------TGGCCAGATCGACTCGGCTACTGATCCTGATCAAGAATATAT----------------------------------------A-TACTTTAT--------------------ATGGTCGGAAACGCTTCCTTCT--G---CCTGTTACATACTT----TTC---AACGAATCTAGTATACCCTTTTACTC--TAC-GAGTAACGGGTATAATA---------------------------------------------------------AAAATTAA---------------------------------------------------------------------------------------------------------------------------------------------------------CAAAT------------------------------------------------------------G-------CGC--TCAAAGC----------------------------GTTCGCTGCAATCAAAGTCCACTCAATTT------------ACTAAATAATCATAATTATAATCGATACGTTTTTTATACTTTTAACTCAC------------------------------------------------------CTTTATTTATTTATATTTATTACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................T----TTC---AACGAATCTAGTATACCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.8517017000000000
.............................................................................................................................................................................................................TACTC--TAC-GAGTAACGGGTATAATA---------------------------------------------------------AAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100000000001
droEug1
GACGGACA------------TGGCTCAATCGACTCCGCTATTGATCCTGATCAAGAATTTAT----------------------------------------A-ACCTTCAT--------------------AGGGTCGGAAACGCTTCCTTCT--A---TCTGTTACATACTT----TTC---AACGAATCTAGTATACCCTTTTACTC--TAC-GAGTAACGGGTATAATT---------------------------------------------------------AAAGTGTTTTTCAAAAG------------GT-CT------A---------------------------GTAAGCAAAATATTCC-AACGAACTAAATTTAGTGCTTGAGACATGGCATAATCTGAACAGTTA-TTGTACATTAGT-----------------------------------------------------------------------------------------------------------------TAGT--GAT----------------------------------------------------------------------------------------------------------------------------------------------------TTTATTTTAAAAATTGAT----------SizeHit CountTotal NormTotal
No Reads
droBia1
GGCGAACA------------TGGCTAGATCTACTCGGCTTGTGATCCTGATGAAGAATATAT----------------------------------------A-TACTTCAT--------------------GGGTTCGGAAAAGCTTCCTTCT--A---TCTATTACATATTT----TCC---GACGAATCTAGTTTACCCTTTTACTC--TAC-GAGTAACGCGTATAAAAACAAG-------------------------------------------------------------------------------AAGT-TTGGATTGATTCATT-----------------------------------------------------------------------------------------------------GGGATAAGTGCC------------ACTTTGT------------------------------TT----TGATT--ATCAA-------TATAT---------ATATTCCAAAAAAG--GTT--AAAAT----------AGGAATATCCACTAAAATTTTATAAGAAAATAC--AGAAATCGT-----------------------------------AC------------------------------------------------------TTATAGTCAATATCATCAATAATASizeHit CountTotal NormTotal
No Reads
droTak1
GA----CA------------TGGCTAGATCGACTCGGCTAGTGATCCTAATCAAGAATATAT----------------------------------------A-TACTTTAT--------------------GGGGTCGGAAACGCTTCCTTCT--A---GCTGTTACATACTT----TTG---CACGAATACAATATACCCTTTTACTC--TAC-GAGTAACGGGTATAAAAACTTG-------------------------------------------------------------------------------AATA-TCAAAATTATTT------------------------------------------------------------------------------------------------------------------------------ATAATTTGTTTTTGTTTTCTACAATTAATACTAC---ATTTAAAGAAATAAATACAGTTTTCTTAAAAT---------ATCTACCAAAAAATTTTATTT----------------------------------------------------------------------------------------------AT------------------------------------------------------TTTTAAATATT-------------SizeHit CountTotal NormTotal
No Reads
droEle1
GACGGACA------------TGGCTAGATCGACTCTCCTTGTGATGCTGATCAAGAATATAG-TATATA------T-------------CAAGAATATATATA-TACTTTAT--------------------AGGGTCGGAAACGTCTCCTTCA--C---TGCGTTGCAAACTT----CTG---ACTGAAATTATAATACCCTCT--------GC-AA-----GGGTATGAAA---------------------------------------------------------ATAATCAATATAATTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AATATTAATG-------TGG--AGAAAGCTA--------------------------ATTTACTGTT----------------------------------------------------------------------------------------------------------------------TACGAAAAA--T-TTTCCTTT--------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GC------------------TGTTTAGATCGACTCGGCT-TTGACCCTGATCAAGAATACAT----------------------------------------A-TACTTTAT--------------------GGG------------------T--A---CCATTTACATACTT----TTC---CACGAATACAATATACTTTTTTACTC--TAC-AAGTAACGGTTACAAAA-C----GGGACTGAT-----GGCCTACAGTT----------------------------------------------------------------------------------------------GCGAGAATACTATCCCTAA----------------------------------------------TG------AATTCATAGTGAATAATTTTTAAATGAGGA--------------------------------------------TAAT-----------------------------TT------------------------GTTCGCTATT----------------------------------------------------------------------------------------------------------------------ATCGGCAATTAT-TTTACCCTGAAG-------------AATSizeHit CountTotal NormTotal
No Reads
droFic1
GACGGACA------------GACATAGATCAACTCGTTTGATGATCCTGATCAAGAATACATATTGACG--------------------CATTT------CCGCAAATGTATTGTATGTTGAAAAATCCAATTTTACAGCAGAAGCTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGATG-------------TAASizeHit CountTotal NormTotal
No Reads
droKik1
GA----CA------------TGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATAT----------------------------------------A-TACTTTAT--------------------AGGGTCGGAAACGTCTCCTTCA--C---TGCGTTGCAAACTT----CTG---ACTGAAATTATAATACCCTGCAA----------------GGGTATAAAT---------------------------------------------------------ATACTT---TAAATAATATAAACATTAAGA-TTA-A----------AGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTT-------CAGA------------GTCCAAAGAAGT--AATAT-------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGCCTAAAAGCATCTAAAGSizeHit CountTotal NormTotal
No Reads
droAna3
TG------------------------TATCGACTCAGCTGTTGATGCTGATCAAGAACATATGTATATA--------------------CAAGA------ACA-TATTCTTA--------------------GGGATCGGATATGATTTCGTCT--C---CCTGTTACATACAT----TCG---CACGAATATAATATACCCTTCTTCTC--TAC-GAGTACCGGGTGACGAAAT--------AAAAC-----AGATTTTAATACTAATACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTA-------------------------------GCTAAGTAAC--TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
A-------------------TGGCTATATCGACTCGGCTGTTGATGCTGATCAAGAATATACATACTTT--------------------CGAAA------ATACTA-AACAA--------------------GTTGTCGGAGATGATTCCTTCT--C---TATATTACATACAT----TTATAAAAATAGTTTAACATACCCTTGAACTC--TAT-GAATACCGGTTATCAAATTATG-------------------------------------------------------------------------------AAA-TTT-A----------TGGC------------------------------------------------------------------AT-TTCTGATCAATTAATTATACGGCAGCTATGGGATATATCCC------------ACCAATG------------------------------CT----TGGTA--TGCAA-------GAACT---------GTGTGCAAAGAAAT--GAAGT----------------------------------------------------------------------------------------------AT-----------------------------------TT-----------------GTGAAAATATTGATGTGCA--CAASizeHit CountTotal NormTotal
No Reads
dp5
GA---------------------------CGACTCGGCTATTGCTGCTGATCAAGAATATATGTACATA------------------------T------ATACTACTTTAT--------------------GGGGTCGGAAACAATTTCTTCT--G---GACGTTATACACATCCTGTTTCACCACAAATCTAATATACCAATATACTCATTTT-GAGTATTGGGTATAATA---------------------------------------------------------ATAATTATTATAATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTATTACTT-------TTGAT---------TTTTATTGAATAAT--TATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................TGCTGATCAAGAATATATGTACATA------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25616.6710002110006900
............................................TGCTGATCAAGAATATATGTACATA------------------------T------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27315.004500000020430
............................................TGCTGATCAAGAATATATGTACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2366.003600000004320
............................................TGCTGATCAAGAATATATGTACATA------------------------T------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2645.002002000000180
............................................TGCTGATCAAGAATATATGTACAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2464.672812000040210
............................................TGCTGATCAAGAATATATGTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.801602000013100
....................................................................................................................................................................................TCACCACAAATCTAATATACCAATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.6720001000010
............................................TGCTGATCAAGAATATATGTACATA------------------------T------AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2830.6720000000020
............................................TGCTGATCAAGAATATATGTACATA------------------------T------AT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2830.3310000001000
................................................GATCAAGAATATATGTACATA------------------------T------ATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.3310000000010
............................................TGCTGATCAAGAATATATGTACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.2920000000020
....................................................................................................................................................................................TCACCACAAATCTAATATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010010000000
......................................................................................................................................................TTCT--G---GACGTTATACACATCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.1820200000000
.......................................................................................................................................................TCT--G---GACGTTATACACATCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.1820200000000
............................................TGCTGATCAAGAATATATGTACATA------------------------A------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2670.1410000000010
............................................TGCTGATCAAGAATATATGTACATT------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020000000020
.....................................................................................................................................................CTTCT--G---GACGTTATACACATCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.0710100000000
droPer2
GA---------------------------CGACTCGGCTATTGCTGCTGATCAAGAATATATGTACATA--------------------CATAT------ATACTACTTTAT--------------------GGGGTCGGAAACAATTTCTTCT--G---GACGTTATACACATCCTGTTTCACTACAAATCTAATATACCAATATACTCATTTTGAAGTATTGGGTATAATA---------------------------------------------------------ATAATTATTATAATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTATTACTT-------TTGAT---------TTTTATTGAATAAT--TATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GACGGACGGACAGACGGACATGGCTAGATCGACTCGGTTTTTGATCCTGATCAAGAATATAT----------------------------------------A-TACTTTGT--------------------GGGGTCGGAGATGCTTCCTTCT--G---CCTGTTACATACAT----TTT---AGCGACTTTAATATACCATTTCACCC--TAT-GGGTGTATGGTATAATG---------------------------------------------------------AACAAAATTAAAGCAGTC---------------------TAATATTTGGCTTAAATGCTACACGTATTACGTAAA-----------------------------------------------------------------------------------------------------------------------------------------------TATTATCAG------------------------------AAGATTTTGCT----------------------------------------------------------------------------------AAACTTTAAATTCATTATTAAAGAAGCTAATTAGACAAAACCAAAGTTTA--T-------A--T-GCC-TCTTTGGCAATAATATTTAAAATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................TTAATATACCATTTCACCC--TAT-GGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.20404000
............GACGGACATGGCTAGATCGACTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.20400040
.........................................................................................................................................................T--G---CCTGTTACATACAT----TTT---AGCGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.15303000
......................................................................................................................................................TTCT--G---CCTGTTACATACAT----TTT---AGCGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.10202000
.........................................................TATAT----------------------------------------A-TACTTTGT--------------------GGGGTCGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.................ACATGGCTAGATCGACTCGGTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100
......................................................................................................................................................TTCT--G---CCTGTTACATACAT----TTT---AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
.......................CTAGATCGACTCGGTTTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
.................................................................................................................................................................CTGTTACATACAT----TTT---AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
.................................................................................................................................................................CTGTTACATACAT----TTT---AGCGACTTTAATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05101000
.......................................................................................................................................................................CATACAT----TTT---AGCGACTTTAATATACCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05101000
........GACAGACGGACATGGCTAGATCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
........................................................................................................................................................CT--G---CCTGTTACATACAT----TTT---AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
.........................................................................................................................................................T--G---CCTGTTACATACAT----TTT---AGCGACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
..................................................................................................................................................................TGTTACATACAT----TTT---AGCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110000
............................................................................................................................................................G---CCTGTTACATACAT----TTT---AGCGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
droVir3
G----------------------TTAGAGCGACTCGGCTTTTGATGCTGATCAAGCATATAAATA-ATA--------------------------------TA-TACTTTAT--------------------GGGGTCGGAGATGCTTCCAT-------------------------------------------TATACTCCTTTAACA--GGC-GAA---------TGG----AAAGAATTGTCAT-----TTTTTGAAATGCTGAGAT-----------------------------------------------------------------------------------------------ACTGTCGTTAA----------------------------------------------TA------A---------------TTAACTAAA----A----------T----------------------AGTGTAC-----AAGATACACAG-------TATAC---------TTATGCTAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................TTTTGATGCTGATCAAGCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................T--------------------GGGGTCGGAGATGCTTCCAT-------------------------------------------TG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.251000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................TA-TACTTTAT--------------------GGGGTCGGAGATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.204000000000000000000000000003000000100000000000000000000000000000
............................................................................................................TTAT--------------------GGGGTCGGAGATGCTTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102100000000000000000000000000000000000010000000000000000000000000
.........................................................................................................ACTTTAT--------------------GGGGTCGGAGATGCTTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000000000000000200000000000000000000000000
...............................................................................................................T--------------------GGGGTCGGAGATGCTTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061000000000000000000000000000010000000000000000000000000000000000
....................................................................A--------------------------------TA-TACTTTAT--------------------GGGGTCGGAGATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................TA-TACTTTAT--------------------GGGGTCGGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000100000000000000000000000
.............................................................................................................TAT--------------------GGGGTCGGAGATGCTTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000000000000000000000000000000000000000000000000000000000000
................................................................A-ATA--------------------------------TA-TACTTTAT--------------------GGGGTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
GA----CA------------GGGCTAAATCGACTCAGCTCGTCGCCATGATCAAGAAAATAT----------------------------------------A-TATTCTA---------------------------------------TTCC--G---CCTGTTACATACTT----TT----AACAAACCCATTATACCCTGATTTCC--TAT-TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................AGAAAATAT----------------------------------------A-TATTCTA---------------------------------------TTCC--G---CCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
........................................................................................................................................................................ATACTT----TT----AACAAACCCATTATACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.111000010
............................TCGACTCAGCTCGTCGCCATGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.091100000
............................TCGACTCAGCTCGTCGCCATGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23120.081000010
droGri2
G---------------------GCCAGATCGAGTCGGCTACTAATGCTGATCAAGAATATGCACATATATATATATAAAGATATATATATATAA------ATA-TATATATA--------------------TATATAAATGATGATTCCTTCTCTG---CCTTTTACAC--AAC---------------TTCATTGTTCC----------------------------------AAATTATTATTAT-----TATTTTAATTAGTATTAT-----------------------------------------------------------------------------------------------TTTATTATTTA----------------------------------------------TT------A---------------T--------------------------------------------------TAT----TATTATTCACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:43 AM