dsi_18051

exon [3l_16537183_16537285_+]; CDS [3l_16537183_16537285_+]; intron [3l_16537286_16538029_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAATCCGACGTTGGTCGTAACACCTGGCTATTAGCCCAAAACATAACCTGTTTCAGTTCTTAACCCTTGATTTGTAAATACTTTAAAAACCAAATATTGTGTTAGTGACGTTCTCTGTCTTTCACCCGCACACACGATCCCCGGCATCAAAAATTCGATTATCGAACCCAACCAACCACACAAATGTATCCAAT *******************************************************...........((((((.......((((...))))..(((((.....)))))(((.((.........)).))).......................(((((..((((.............))))..))))).))))))..***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	O001 Testis	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	M024 male body	M023 head	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
.........................................................AATCCGACGTTGGTCGTAACACCTGGCT.....................................................................................................................................................................	28	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................ACCCGCACACACGATCCC.....................................................	18	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................ATATTGTGTTAGTGACGTT..................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...............................TACGCTAATTTCAGTTTTGGCGAGC..................................................................................................................................................................................................	25	3	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................TTGATTTGTAAATACT................................................................................................................	16	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................ACACGATCCACGGACTCAAAAA.........................................	22	3	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................CACAACCAACCACAGAAATGT.......	21	2	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................ATTATGTTAGGGACCTTCTC...............................................................................	20	3	6	0.17	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................CGACGATCTCTGGCTTTCACC....................................................................	21	3	7	0.14	1	0	0	0	0	0	0	0	1	0	0
..........................................CAGTTATGGTAAGTAA................................................................................................................................................................................................	16	1	10	0.10	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................CGCACATACGTTCCCGGGC.................................................	19	3	12	0.08	1	0	0	0	0	0	0	1	0	0	0
.................................................GGTAGGTAAATCCGCCGG.......................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1

TAACGGACCGTTGAGGAGCTGCTTTAGGTAAATGCGATTAAAGTCAAAACCATTCATTTAGGCTGCAACCAGCATTGTGGACCGATAATCGGGTTTTGTATTGGACAAAGTCAAGAATTGGGAACTAAACATTTATGAAATTTTTGGTTTATAACACAATCACTGCAAGAGACAGAAAGTGGGCGTGTGTGCTAGGGGCCGTAGTTTTTAAGCTAATAGCTTGGGTTGGTTGGTGTGTTTACATAGGTTA ***************************************************...........((((((.......((((...))))..(((((.....)))))(((.((.........)).))).......................(((((..((((.............))))..))))).))))))..*******************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	GSM343915 embryo
....................................................................................................................................................................................GGGCGTGTGTGTTAGG......................................................	16	1	12	0.33	4	4	0	0	0	0
..............GGAGCGGGTCTAGGTAAATGC.......................................................................................................................................................................................................................	21	3	4	0.25	1	0	1	0	0	0
...........................................................................................................................................................................................................................CTGGGGTTGTTTCGTGTGTTT..........	21	3	12	0.08	1	0	0	0	1	0
...................................................................................................................................................................................................GGGCCGTGGTTTTTAAT......................................	17	2	13	0.08	1	0	0	1	0	0
....................................ATTAAAGTGAATACCATT....................................................................................................................................................................................................	18	2	14	0.07	1	0	0	1	0	0
.....................................................................................................................................TATGAATTTCTTGGTTTTTAA................................................................................................	21	3	18	0.06	1	0	0	0	0	1
.....................................................................TAGCATTGTTGACCGA.....................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:16537236-16537485 +	dsi_18051	ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----CCGACGTTGGT------------------------------------------CGT----AACACCTGG-CTATT--AGCCCAAAAC--------------------ATAACCTGTTTCAGTTC------TTAACC--CT--------------TGATTTGTAAATACTT------------------------------------------------------TAAAAA-C----CAA------------------------------ATATTGTG--TTAGTGACGTTCT--CTGTCT-TTCACCCGCAC-------ACACGAT--------CCCCGGCATC------A----AAAA-------TTCGATTATCGAACC----CAACC-AACCACACAAATGTATCC--AAT
droSec2	scaffold_0:9016076-9016325 +		ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----CCGGCGTTGGT------------------------------------------CGT----AACACCTGG-CTATT--AGCCCAAAAC--------------------ATAACCTGTTTCAGTTC------TTAACC--CT--------------TGATTTGTAAATACTT------------------------------------------------------TAAAAA-C----CAA------------------------------ATATTGTG--TTAGTGACGTTTT--CTGTCT-TTCACCCGCAC-------ACACGAT--------CCCCGGCATC------A----AAAA-------TTCGATTATCGAACC----CAACC-AACCACACAAATGTATCC--AAT
dm3	chr3L:16954653-16954898 +		ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----CCGGCGTTGGT------------------------------------------CGT----AACACCTGG-CTATT--AGCCCAAAGC--------------------ATAACCTGTTTTAGTTC------TTAACC--CT--------------TGATTTGTAAATACTT------------------------------------------------------TTAAAA-C----CAA------------------------------ATATTGTG--TTAGTGACGTTCT--CTGTCT-TTCACCCGCAC-------ACACGAT--------CCCCGGCATC------A----AAAA-------TTCGATTATCGAACC----CA-----ACCACACAAATGTATCC--AAT
droEre2	scaffold_4784:16887986-16888238 -		ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----CCGGCGGTGGT------------------------------------------CGT----AACACCTGG-CTATT--AGCCCA-AAC--------------------ATAACCCGTTTCAGTTC------TTAACC--CT--------------TGATTTGTAAATACTT------------------------------------------------------T-AAAA-C----CAA-ATAAAAC----------------------AAAATGTG--TTAGTGACGTTCT--CTGTCT-TTCACCCGCAC-------ACACGAT--------C-CCGGCATC------A----AAAA--------TCGATTATCAAACC----CAACC-AACCACACAAATGTATCC--AAT
droYak3	3L:17120478-17120731 -		ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----CCGGCGGTGGT------------------------------------------CGT----AACACCTGG-CTATA--AGCCCAAAAC--------------------ATAACCTGTTTCAGTTC------TTAACC--CT--------------TGATTTGTAAATACTT------------------------------------------------------TAAAAATC----CAA-ATA---C----------------------ATATTGTG--TTAGTGACGTTCT--CTGTCT-TTCACCCGCAC-------ACACGAT--------CCCCGGCATC------A----AAAA--------TCGATTATCAAACC----CAACC-AACCACACAAATGTATCC--AAT
droEug1	scf7180000409711:383937-384194 -		ATTGCCTGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAAC----TCGGCGTTGGT------------------------------------------CGT----AACACCTGGTCGATT--TGATCCGAAC--------------------ATACCCAGTTTGAGTTC-----TTTAACC--CT--------------TGATTTGTAAATACCT------------------------------------------------------TTAAAA-C----CGA------------------------------ATATTGTG--TTAGTGACGTTTT--CTGTCT-TTCACCCGCACAC-----ACACGAT--------CCCCGGCATC------A----AAAA-------ATCGATTATCAAATCCGACCAACC-AACCACACAAACGTATCC--TCT
droBia1	scf7180000302428:3157527-3157782 -		ATTGCCAGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----TCGGCGTTGGT------------------------------------------CGCATAAAACACCTGG-CGATT--CGCCC---------------------------------TTTGAGTTC-----CTTAACC--CT--------------TGATTTGTAAATATG--------------------------------------------------TACCTT-AAAA-C----CGA------------------------------ATACTGTG--TTAGTGACGTTCT--CTATCT-TTCACCCGCAC-------ACACGAT--------CCCCGGCATC------ATAAAAAA-TCGAAAAATCGAATATCAAACC----CAACCAACCCACACAAATGTATCC--ACT
droTak1	scf7180000415352:407201-407446 -		ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----CCGGCGTTGGT------------------------------------------CGA----AACACCA----------------GAAC--------------------ATACCCAGTTTGAGTTC-----CTTAAC---CT--------------TGATTTGTAAATATG--------------------------------------------------TACCTT-AAAA-C----CGA------------------------------ATATTGTG--TTAGTGACGTTCTATCTATCT-TTCACCCGCAC-------ACACGAT--------CCCCGGCATC------A----AAAATC---AAACCGAATATCAAATC----CAACC-AACCACACAAATGTATCC--AAT
droEle1	scf7180000491255:3390174-3390435 +		ATTGCCTGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----TCGGCGTTGGT------------------------------------------CGT----AACACCTGG-CGATT--TGCCCAGGAC--------------------ACACACAGATTGAGTTC-----CTTAACC--CT--------------TGATTTGTAAATACCT---------------------------------------------TAAG-ACCTT-AAAA-C----CGAATCATG------------------------ATATTGTG--TTAGTGACGTTCT--CTGTCT-TTCACCCGCAC-------ACACGAT--------CCTTGGCATT------A----AAA---------TCGAATATCAAACC----CAACC-AACCACACAAACGTATCC--AAT
droRho1	scf7180000779902:116542-116789 -		ATTGCCTGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----TCGGCATTGGT------------------------------------------CGT----AACACCTGG-CGATT--CGCCCAGAAC--------------------ATACCCAGTTTGAGTTC-----CTTAACC--CT--------------TGATTTGTAAATACCT------------------------------------------------------T-AAAA-C----CGA------------------------------ACATTGTG--TAAGTGACGTTCT--CTGTCT-TTCACCTGCAC-------ACACGAT--------ACCCGGCATC------A----AAA---------TCGAATATCAAACC----CAACC-AACCACACAAATGTTTCC--AAT
droFic1	scf7180000454113:3654142-3654416 -		ATTGCCTGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTCGGTAAGTAAACTT-CTCGGCGTCGCT------------------------------------------CGA----AACACCTGG-CAATTTTTGACCAGCTC----------AT--------AAAAACAGTTTGAGTTC-----CTTAACC--CT--------------TGATTTGTAAATATAC-----------------------------------------TCGTACA-TACCTC-AAAA-T----CGAAATCGA------------------------ATATTGTG--TTAGTGACTTTCT--CTGTCT-TTCACCCGCACAC-----ACACGAA--------CCCCGGCATC------A----AAA---------TCGAAAATCAAACC----CAACC-AACCACACAAATGTATCC--AAT
droKik1	scf7180000302486:792205-792447 +		ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTCGGTAAGTAAAT----TCGACCCGGGA------------------------------------------CACAT--TAC---------------GCCCT---------------------------A-CGTTTTGCGTTC-----CCTAACC--CTTGATCCCTTGATCTTGATCTGTATATACCC---------------------------------------------AA-------TAAAAA-CATACCGA----GA------------------------ACGTTGTG--GTAGTGACTGTCTC-TTGTCT-TTCAC--GCAC-------ACACGATA------TCCCCGACATC------A----AAA---------TCGA---------------AACC-CACCACACAAATGTTGTG--TAT
droAna3	scaffold_13337:13667391-13667679 -		CTTGCCAGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT-A-CTCGGCGTTGGTACCTACTTGACCCCACTCG-ACACCCT-CCCATCCCGGGA--GC---------------CAATT------------------------------------CCCATTTGAGTTTAAAACCTTAACCGCC------------TCTCGATTTGTAAATACCT---------------------------------------------TAAGTACCTT-ACCA-A----TAA------------------------------ACATTGTG--GTAGTGACGT-CTTTCTGTCT-TTCACGCGCCCAC-CCACGCACGCT--------CACCGATATCAACATCA----AAA---------TCAAA-ATCAAACC----GA-------CACACAAATGTATCC-AAAT
droBip1	scf7180000395832:608850-609098 -		CTTGCCAGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT-A-CTCGGCGCTGGTACATACC---CCGTACTCGTACACCTT-CCGG-GCCGGGA--GCCAT--CCC---------------GGCCA---CAGTC---------------------------CACCCC-----CTTAACCGCCT--------------TGATTTGTAAATACC-------------------------------------------------------------------------------------------------------TTGTG--GTAGTGACGT-CTTTCTGTCT-TTCACGCGCCCACCCCACGCACGCT------CTCCCCGA----------------AA---------TCGAATATCCGA---------------CACACAAATGTTACC-AAAT
dp5	XR_group8:4776936-4777271 +		A--------------------------------------TTTCAGTTTCGGTAAGTAAACGTCCTC-----------CTCCTTCCCCCCACTCCCGCCCCCTATCGA-GCTTGTGGTCAG----AAAAAT------------------------CCACTCCCTGAAACCCCATTTTCAGTTACCGTTT------TTAAAC--TC---------TATTTTATGTTGTAAATACCCCCAATGTCCAGTGTCCTGTGTCCTGTGTCCTGTATGTTTAGTCCTTAAG-TCCTC-CCAC-A----AGAAATACCATATGCAATTACGAGTACTACTGTACGTTGTGACGTAGTGACGTTTT--CTATCT-TTCTCACGCAT-------ACACGATATACTCCTCCTTGACATC------A----AAA---------TCGAC-CTCACCTC----TAAAC-A-----AAAAATGTACCAAAAAT
droPer2	scaffold_12565:298-392 -		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTGACGTTTT--CTATCTCTTCTCACGCAT-------CCACGATATACTCCTCCTCGACATC------A----AAA---------TCGAC-CTCACCTC----TAAAC-A-----AAAAATGTGCCAAAAAT
droWil2	scf2_1100000004511:1294022-1294081 +		TTTGCCTGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13049:10209492-10209549 -		TTTGCCTGGCAACACCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6680:10587881-10587938 +		TTTACCTGGCAACAGCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15110:9033082-9033142 +		TTTGCCTGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAGC----C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----CCGACGTTGGT------------------------------------------CGT----AACACCTGG-CTATT--AGCCCAAAAC--------------------ATAACCTGTTTCAGTTC------TTAACC--CT--------------TGATTTGTAAATACTT------------------------------------------------------TAAAAA-C----CAA------------------------------ATATTGTG--TTAGTGACGTTCT--CTGTCT-TTCACCCGCAC-------ACACGAT--------CCCCGGCATC------A----AAAA-------TTCGATTATCGAACC----CAACC-AACCACACAAATGTATCC--AAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................AAT----CCGACGTTGGT------------------------------------------CGT----AACACCTGG-CT......................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................ACCCGCAC-------ACACGAT--------CCC.............................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................ATATTGTG--TTAGTGACGTT............................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................T--------------TGATTTGTAAATACT.....................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----CCGGCGTTGGT------------------------------------------CGT----AACACCTGG-CTATT--AGCCCAAAAC--------------------ATAACCTGTTTCAGTTC------TTAACC--CT--------------TGATTTGTAAATACTT------------------------------------------------------TAAAAA-C----CAA------------------------------ATATTGTG--TTAGTGACGTTTT--CTGTCT-TTCACCCGCAC-------ACACGAT--------CCCCGGCATC------A----AAAA-------TTCGATTATCGAACC----CAACC-AACCACACAAATGTATCC--AAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......GGCAACTCCTCGACGAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
.......GGCAACTCCTCGACGAAATCCATTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
............CTCCTCGACGAAATCCATTTACGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
ATTGCCTGGCAACTCCTCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
.....CTGGCAACTCCTCGACGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................C------TTAACC--CT--------------TGATTTGTAA..........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0

dm3

ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----CCGGCGTTGGT------------------------------------------CGT----AACACCTGG-CTATT--AGCCCAAAGC--------------------ATAACCTGTTTTAGTTC------TTAACC--CT--------------TGATTTGTAAATACTT------------------------------------------------------TTAAAA-C----CAA------------------------------ATATTGTG--TTAGTGACGTTCT--CTGTCT-TTCACCCGCAC-------ACACGAT--------CCCCGGCATC------A----AAAA-------TTCGATTATCGAACC----CA-----ACCACACAAATGTATCC--AAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......GGCAACTCCTCGACGAAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GGCAACTCCTCGACGAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ATTGCCTGGCAACTCCTCGACGAAATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGCCTGGCAACTCCTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ACTCCTCGACGAAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GGCAACTCCTCGACGAAATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GGCAACTCCTCGACGAAATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................AAATCCATTTACGCTAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ATTGCCTGGCAACTCCTCGACGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................T--------CCCCGGCATC------A----AAAA-------CA..............................................	18	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----CCGGCGGTGGT------------------------------------------CGT----AACACCTGG-CTATT--AGCCCA-AAC--------------------ATAACCCGTTTCAGTTC------TTAACC--CT--------------TGATTTGTAAATACTT------------------------------------------------------T-AAAA-C----CAA-ATAAAAC----------------------AAAATGTG--TTAGTGACGTTCT--CTGTCT-TTCACCCGCAC-------ACACGAT--------C-CCGGCATC------A----AAAA--------TCGATTATCAAACC----CAACC-AACCACACAAATGTATCC--AAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..TGCCTGGCAACTCCTCGACGAAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0	0
.TTGCCTGGCAACTCCTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0
ATTGCCTGGCAACTCCTCGACGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	1	0	0	1	0	0	0
..TGCCTGGCAACTCCTCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0
..TGCCTGGCAACTCCTCGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
..............CCTCGACGAAATCCATTTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.................................CGCTAATTTCAGTTTTGGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
....................................TAATTTCAGTTTTGGTAAGTAAAT----CCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
..............................................TTTGGTAAGTAAAT----CCGGCGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTATCAAACC----CAACC-AACCACACAA.............	28	1	1.00	1	0	1	0	0	0	0	0
........GCAACTCCTCGACGAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.............TCCTCGACGAAATCCATTTACGCTAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.................................CGCTAATTTCAGTTTTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.......GGCAACTCCTCGACGAAATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
ATTGCCTGGCAACTCCTCGACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.......GGCAACTCCTCGACGAAATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0

droYak3

ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----CCGGCGGTGGT------------------------------------------CGT----AACACCTGG-CTATA--AGCCCAAAAC--------------------ATAACCTGTTTCAGTTC------TTAACC--CT--------------TGATTTGTAAATACTT------------------------------------------------------TAAAAATC----CAA-ATA---C----------------------ATATTGTG--TTAGTGACGTTCT--CTGTCT-TTCACCCGCAC-------ACACGAT--------CCCCGGCATC------A----AAAA--------TCGATTATCAAACC----CAACC-AACCACACAAATGTATCC--AAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................GAAATCCATTTACGCTAATTTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................CGACGAAATCCATTTACGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................CGACGAAATCCATTTACGCTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............CCTCGACGAAATCCATTTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................GAT--------CCCCGGCATC------A----AAAA--------TCGATT.........................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

ATTGCCTGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAAC----TCGGCGTTGGT------------------------------------------CGT----AACACCTGGTCGATT--TGATCCGAAC--------------------ATACCCAGTTTGAGTTC-----TTTAACC--CT--------------TGATTTGTAAATACCT------------------------------------------------------TTAAAA-C----CGA------------------------------ATATTGTG--TTAGTGACGTTTT--CTGTCT-TTCACCCGCACAC-----ACACGAT--------CCCCGGCATC------A----AAAA-------ATCGATTATCAAATCCGACCAACC-AACCACACAAACGTATCC--TCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATTGCCAGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----TCGGCGTTGGT------------------------------------------CGCATAAAACACCTGG-CGATT--CGCCC---------------------------------TTTGAGTTC-----CTTAACC--CT--------------TGATTTGTAAATATG--------------------------------------------------TACCTT-AAAA-C----CGA------------------------------ATACTGTG--TTAGTGACGTTCT--CTATCT-TTCACCCGCAC-------ACACGAT--------CCCCGGCATC------ATAAAAAA-TCGAAAAATCGAATATCAAACC----CAACCAACCCACACAAATGTATCC--ACT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----CCGGCGTTGGT------------------------------------------CGA----AACACCA----------------GAAC--------------------ATACCCAGTTTGAGTTC-----CTTAAC---CT--------------TGATTTGTAAATATG--------------------------------------------------TACCTT-AAAA-C----CGA------------------------------ATATTGTG--TTAGTGACGTTCTATCTATCT-TTCACCCGCAC-------ACACGAT--------CCCCGGCATC------A----AAAATC---AAACCGAATATCAAATC----CAACC-AACCACACAAATGTATCC--AAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATTGCCTGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----TCGGCGTTGGT------------------------------------------CGT----AACACCTGG-CGATT--TGCCCAGGAC--------------------ACACACAGATTGAGTTC-----CTTAACC--CT--------------TGATTTGTAAATACCT---------------------------------------------TAAG-ACCTT-AAAA-C----CGAATCATG------------------------ATATTGTG--TTAGTGACGTTCT--CTGTCT-TTCACCCGCAC-------ACACGAT--------CCTTGGCATT------A----AAA---------TCGAATATCAAACC----CAACC-AACCACACAAACGTATCC--AAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTGCCTGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT----TCGGCATTGGT------------------------------------------CGT----AACACCTGG-CGATT--CGCCCAGAAC--------------------ATACCCAGTTTGAGTTC-----CTTAACC--CT--------------TGATTTGTAAATACCT------------------------------------------------------T-AAAA-C----CGA------------------------------ACATTGTG--TAAGTGACGTTCT--CTGTCT-TTCACCTGCAC-------ACACGAT--------ACCCGGCATC------A----AAA---------TCGAATATCAAACC----CAACC-AACCACACAAATGTTTCC--AAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATTGCCTGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTCGGTAAGTAAACTT-CTCGGCGTCGCT------------------------------------------CGA----AACACCTGG-CAATTTTTGACCAGCTC----------AT--------AAAAACAGTTTGAGTTC-----CTTAACC--CT--------------TGATTTGTAAATATAC-----------------------------------------TCGTACA-TACCTC-AAAA-T----CGAAATCGA------------------------ATATTGTG--TTAGTGACTTTCT--CTGTCT-TTCACCCGCACAC-----ACACGAA--------CCCCGGCATC------A----AAA---------TCGAAAATCAAACC----CAACC-AACCACACAAATGTATCC--AAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTGCCTGGCAACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTCGGTAAGTAAAT----TCGACCCGGGA------------------------------------------CACAT--TAC---------------GCCCT---------------------------A-CGTTTTGCGTTC-----CCTAACC--CTTGATCCCTTGATCTTGATCTGTATATACCC---------------------------------------------AA-------TAAAAA-CATACCGA----GA------------------------ACGTTGTG--GTAGTGACTGTCTC-TTGTCT-TTCAC--GCAC-------ACACGATA------TCCCCGACATC------A----AAA---------TCGA---------------AACC-CACCACACAAATGTTGTG--TAT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTTGCCAGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT-A-CTCGGCGTTGGTACCTACTTGACCCCACTCG-ACACCCT-CCCATCCCGGGA--GC---------------CAATT------------------------------------CCCATTTGAGTTTAAAACCTTAACCGCC------------TCTCGATTTGTAAATACCT---------------------------------------------TAAGTACCTT-ACCA-A----TAA------------------------------ACATTGTG--GTAGTGACGT-CTTTCTGTCT-TTCACGCGCCCAC-CCACGCACGCT--------CACCGATATCAACATCA----AAA---------TCAAA-ATCAAACC----GA-------CACACAAATGTATCC-AAAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......GGCAACTCCTCGACGAAAACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	1	0	0	0	0	3
.TTGCCAGGCAACTCCTCGACGAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	3	0	0	0	0	0
.TTGCCAGGCAACTCCTCGACGAAAACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
......AGGCAACTCCTCGACGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..........AACTCCTCGACGAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.TTGCCAGGCAACTCCTCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.TTGCCAGGCAACTCCTCGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..TGCCAGGCAACTCCTCGACGAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..........AACTCCTCGACGAAAACCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
............CTCCTCGACGAAAACCATTTACGCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...........ACTCCTCGACGAAAACCATTTACGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..TGCCAGGCAACTCCTCGACGAAAACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
CTTGCCAGGCAACTCCTCGACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
CTTGCCAGGCAACTCCTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....CAGGCAACTCCTCGACGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..TGCCAGGCAACTCCTCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......AGGCAACTCCTCGACGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
CTTGCCAGGCAACTCCTCGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..........AACTCCTCGACGAAAACCATTTACGCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.......GGCAACTCCTCGACGAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...GCCAGGCAACTCCTCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....CCAGGCAACTCCTCGACGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................CACTCG-ACACCCT-CCCATCCCGGGA--.........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...........ACTCCTCGACGAAAACCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.TTGCCAGGCAACTCCTCGACGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..TGCCAGGCAACTCCTCGACGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
CTTGCCAGGCAACTCCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
......AGGCAACTCCTCGACGAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............CTCGACGAAAACCATTTACGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
......AGGCAACTCCTCGACGAAAACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droBip1

CTTGCCAGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAAT-A-CTCGGCGCTGGTACATACC---CCGTACTCGTACACCTT-CCGG-GCCGGGA--GCCAT--CCC---------------GGCCA---CAGTC---------------------------CACCCC-----CTTAACCGCCT--------------TGATTTGTAAATACC-------------------------------------------------------------------------------------------------------TTGTG--GTAGTGACGT-CTTTCTGTCT-TTCACGCGCCCACCCCACGCACGCT------CTCCCCGA----------------AA---------TCGAATATCCGA---------------CACACAAATGTTACC-AAAT	Size	Hit Count	Total Norm	Total
No Reads

dp5

A--------------------------------------TTTCAGTTTCGGTAAGTAAACGTCCTC-----------CTCCTTCCCCCCACTCCCGCCCCCTATCGA-GCTTGTGGTCAG----AAAAAT------------------------CCACTCCCTGAAACCCCATTTTCAGTTACCGTTT------TTAAAC--TC---------TATTTTATGTTGTAAATACCCCCAATGTCCAGTGTCCTGTGTCCTGTGTCCTGTATGTTTAGTCCTTAAG-TCCTC-CCAC-A----AGAAATACCATATGCAATTACGAGTACTACTGTACGTTGTGACGTAGTGACGTTTT--CTATCT-TTCTCACGCAT-------ACACGATATACTCCTCCTTGACATC------A----AAA---------TCGAC-CTCACCTC----TAAAC-A-----AAAAATGTACCAAAAAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................CCTC-CCAC-A----AGAAATACCATAT.....................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................ACGAGTACTACTGTACGTTGTGACGTAG...................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTGACGTTTT--CTATCTCTTCTCACGCAT-------CCACGATATACTCCTCCTCGACATC------A----AAA---------TCGAC-CTCACCTC----TAAAC-A-----AAAAATGTGCCAAAAAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

TTTGCCTGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........AACTCCTCGACGAAAACCATTTACGCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	1	0	1	0
......TGGCAACTCCTCGACGAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
..........AACTCCTCGACGAAAACCATTTACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
........GCAACTCCTCGACGAAAACCATTTACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
TTTGCCTGGCAACTCCTCGACGAAAACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0

droVir3

TTTGCCTGGCAACACCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGTAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.TTGCCTGGCAACACCTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTTGCCTGGCAACACCTCGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ACCTCGACGAAATCCATTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GACGAAATCCATTTACGCTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GCAACACCTCGACGAAATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGGCAACACCTCGACGAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CGACGAAATCCATTTACGCTAATTTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................ATTTACGCTAATTTCAGTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CCTCGACGAAATCCATTTACGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GGCAACACCTCGACGAAATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ACCTCGACGAAATCCATTTACGCTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTGCCTGGCAACACCTCGACGAAATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATCCATTTACGCTAATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTTGCCTGGCAACACCTCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TCGACGAAATCCATTTACGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTGCCTGGCAACACCTCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
........................ATCCATTTACGCTAATTTCAGTTTTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GCCTGGCAACACCTCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GAAATCCATTTACGCTAATTTCAGTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TCCATTTACGCTAATTTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AATCCATTTACGCTAATTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CTGGCAACACCTCGACGAAATCCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ACACCTCGACGAAATCCATTTACGCTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGCCTGGCAACACCTCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CTGGCAACACCTCGACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CCTCGACGAAATCCATTTACGCTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGGCAACACCTCGACGAAATCCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGGCAACACCTCGACGAAATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TCCATTTACGCTAATTTCAGTTTTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGGCAACACCTCGACGAAATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TTTACGCTAATTTCAGTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CCTCGACGAAATCCATTTACGCTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTTGCCTGGCAACACCTCGACGAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGCCTGGCAACACCTCGACGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTTACCTGGCAACAGCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.TTACCTGGCAACAGCTCGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	0	1
.....................GAAAACCATTTACGCTAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............AGCTCGACGAAAACCATTTACGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..TACCTGGCAACAGCTCGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............GCTCGACGAAAACCATTTACGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.TTACCTGGCAACAGCTCGACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
TTTACCTGGCAACAGCTCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...........ACAGCTCGACGAAAACCATTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...ACCTGGCAACAGCTCGACGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
...ACCTGGCAACAGCTCGACGAAAACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...ACCTGGCAACAGCTCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.TTACCTGGCAACAGCTCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......GGCAACAGCTCGACGAAAACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..TACCTGGCAACAGCTCGACGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
...ACCTGGCAACAGCTCGACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
..TACCTGGCAACAGCTCGACGAAAACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0

droGri2

TTTGCCTGGCAACTCCTCGACGAAAACCATTTACGCTAATTTCAGTTTTGGTAAGTAAGC----C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_18051

3l:16537286-16537435 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.1	-18.9	-18.8