ID:

dsi_18038

Coordinate:

3l:15688995-15689061 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_15688852_15688994_+]; CDS [3l_15688852_15688994_+]; CDS [3l_15689062_15689152_+]; exon [3l_15689062_15689152_+]; intron [3l_15688995_15689061_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------################################################## ACGGAGAATGGCGATGGCATTGACTACAAGGCGCTCTGGGAAGCGGAAAAGTGAGTGAAGCTCCCCCCCAAGAACCTCAAAGTACAAAACCCGAATATAAACGATAATCCTTTGCAGATTGGAGAACGATAAGCTGAGGCAGATGCTCAAGCAGAAGGACGATGAAG ************************************************.........................((..............((........))............))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M053 female body	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	M024 male body
..................ATTGACTAAAAGGCGCTCTGG................................................................................................................................	21	1	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................ATTGGAGAACGATAAGCTGAGGCAGATG......................	28	0	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................CAGATGCTCAAGCAGAAGGAC.......	21	0	1	1.00	1	1	0	0	0	0	0
.........................ACAAGGCGCTGTGGGA..............................................................................................................................	16	1	4	0.25	1	1	0	0	0	0	0
.........................ACAAGGCGCTGTGGGATG............................................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0
.....................GACGACAACGCCCTCTGGGA..............................................................................................................................	20	3	5	0.20	1	0	0	0	1	0	0
..........................................................................................................TTCCTTTGCAGATTGTAGATC........................................	21	3	7	0.14	1	0	0	0	0	1	0
............GATGGGATTGAAGACAAGGC.......................................................................................................................................	20	3	16	0.06	1	0	0	0	0	0	1
................GCATTGACTACACGTC.......................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0

Anti-sense strand reads

TGCCTCTTACCGCTACCGTAACTGATGTTCCGCGAGACCCTTCGCCTTTTCACTCACTTCGAGGGGGGGTTCTTGGAGTTTCATGTTTTGGGCTTATATTTGCTATTAGGAAACGTCTAACCTCTTGCTATTCGACTCCGTCTACGAGTTCGTCTTCCTGCTACTTC ************************************************.........................((..............((........))............))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M024 male body	M053 female body	M023 head	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
............................................................................AGGTTAATGTTCTGGGCTTA.......................................................................	20	3	10	7.10	71	28	18	17	2	5	0	1	0
............................................................GAGGGGGGGTTCTTGGGTT........................................................................................	19	2	2	0.50	1	0	0	0	1	0	0	0	0
..........................................................................GTAGTTTCGTGTTTTGGGCAT........................................................................	21	3	3	0.33	1	1	0	0	0	0	0	0	0
............................................................................AGTTTAATGTTCTGGGCTT........................................................................	19	2	4	0.25	1	0	1	0	0	0	0	0	0
..............................................................GAGGGGGGTCTTGGTGTTTC.....................................................................................	20	3	5	0.20	1	0	0	0	1	0	0	0	0
..................................................................................ATGTTCTGGGCTTAT......................................................................	15	1	6	0.17	1	0	1	0	0	0	0	0	0
......................TGCTGTTGCGGGAGACCCT..............................................................................................................................	19	3	14	0.14	2	0	0	0	0	2	0	0	0
.............................................................................GGTTAATGTTCTGGGCTTA.......................................................................	19	3	20	0.10	2	0	0	0	1	0	0	0	1
.....................CTGATGTTACGTGAGAGCC...............................................................................................................................	19	3	11	0.09	1	0	0	0	0	0	1	0	0
........ACCGCGACCGTAACTG...............................................................................................................................................	16	1	11	0.09	1	0	0	0	0	0	1	0	0
......................................................................................................................................................CGTCTTCCTGGTACT..	15	1	13	0.08	1	0	0	0	0	0	1	0	0

Generated: 04/23/2015 at 05:54 PM