ID:

dsi_18005

 Coordinate:

2l:5007786-5007935 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.9 -4.8 -4.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTACAAATGGCCGCCAGTCTCCAAGGTGGCGAACAGCAAGAGGTCGCGGAGTAAACGCCCTAACTGCCTAAGTTAACCTGAAAGCCAAATCAATTGACTTTGAAAAGGCGAGCTTAAGCTAACATTTAATCAAATACCATCTTAATCACTATCTATGATTATTCAATTACTAATTTCTCCACTTTTATGACCAATTCTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGC
****************************************************************************************************..(((((..(((..............((((((.......................))))))...............)))..))))).............*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
...................................................................................................................................................................................................GCAAGCGAGGTCGGCCGGCTAACGT.............................. 25 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAGCGAGGTCGGCCGGCT................................... 18 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTCCGCTCTGCACACAGCGAAACTGGC... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAATGGACTTTGAAACGGCGAAC......................................................................................................................................... 23 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGCGAGGTCGGCCGGCTAACGTGT............................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGCGAGGTCGGCCGGCTAACGTGG............................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CAAGCGAGGTCGGCCGGC.................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGCAAGCGAGGTCGGCCGGC.................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................TGTCCGCTCTGCACACAGC............ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AACGTGTCCGCTCTGCACA................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................TGAAAAGGCGAGCTTAAGCTAACATTT........................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................CCACTTTTATGACCAATTCTA................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................CTAACGTGTCCGCTCTGC................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................AACAGCAAGAGGTCGCGGAG....................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTCCGCTCTGCACACAGC............ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............GCCAGTCTCCAAGGT............................................................................................................................................................................................................................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............GCCAGTCTCCAAGGTGGCG........................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................CAAGCGAGGTCGGCCGGCT................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............GCTAGTCTCCAAGGTGGC............................................................................................................................................................................................................................ 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTCCGCTCTGCACACAGCAAAC........ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GCGAGGTCGGCCGGCTAA................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................TATCCGCTCTGCACACAGC............ 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CCACGAGGTCGGCCGGCTAAC................................ 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GCAAGCGAGGTCGGCCGGCTAACGG.............................. 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................TTGAAAAGGCGAGCTTAAGCTAACATTT........................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................TGCAAGCGAGGTCGGCCGGCC................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
............GCTAGTCTCCAAGGT............................................................................................................................................................................................................................... 15 1 7 0.43 3 0 0 3 0 0 0 0 0 0 0 0
.........GACGCCAGTCTCCAAGGG............................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CCGCTCTGAACACAG............. 15 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................ATGCAAGCGAGGTCGGCC....................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................TCTAAGTCAACCTGAAAGAC.................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0
...............................AACCGCACGAGGTCGCG.......................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................CAATGGACTTTGAAACGG.............................................................................................................................................. 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
.............................AGAACAGCAAGAGGT.............................................................................................................................................................................................................. 15 1 15 0.13 2 0 0 2 0 0 0 0 0 0 0 0
............GCCGGTCTCCAAGGTG.............................................................................................................................................................................................................................. 16 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
............GCCCGTCTCCAAGGT............................................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
..............................GAACAGCAAGAGGTT............................................................................................................................................................................................................. 15 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................CCTTACTGTCTAAGTT................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................GCCTGACGTGTCCGCACT..................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................CTTACTGTCTAAGTTA............................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GATGTTTACCGGCGGTCAGAGGTTCCACCGCTTGTCGTTCTCCAGCGCCTCATTTGCGGGATTGACGGATTCAATTGGACTTTCGGTTTAGTTAACTGAAACTTTTCCGCTCGAATTCGATTGTAAATTAGTTTATGGTAGAATTAGTGATAGATACTAATAAGTTAATGATTAAAGAGGTGAAAATACTGGTTAAGATCGCTCCAGCCGGCCGATTGCACAGGCGAGACGTGTGTCGCTTTGACCGTCG
***************************************************..(((((..(((..............((((((.......................))))))...............)))..))))).............**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M023
head
 SRR553488
RT_0-2 hours eggs
.................................................................................................................................AGTTTATGGCAGAATT......................................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGCTCTAGCAGGCCGATTT................................ 20 3 4 0.25 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................ACACTAGTAAGTTAATGGTTAA........................................................................... 22 3 5 0.20 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................GGTTGCACATGCGAGA..................... 16 2 15 0.20 3 0 2 0 0 0 0 0 1
.................................................................................................................................................................CAGTGAATGATTAAAGAG....................................................................... 18 2 7 0.14 1 0 0 0 1 0 0 0 0
...ATTTACCGGTGGTCAGAG..................................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 1 0 0
........................................................................................................................................TGTAGAATTAGTTATAGA................................................................................................ 18 2 12 0.08 1 0 0 0 0 0 0 1 0
..............................................TCCTCATTAGCGGGCTTGA......................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 1 0 0 0 0
.........................................................................................................................TGTAAATTAGTTCAT.................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0
...........................CCGCTTGACGTTCTC................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................TCGCTGCAGCCGTCCGA................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0
................................................................................................................................................................................................TTAAGAGCGCTGCAGC.......................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:5007736-5007985 + dsi_18005 CTAC---AAAT----GGCCGCCAGTCTCCAA-GGTGGCGAACAGCAAGAGGTC---GCG---GAGT--A----AA-C--------GCCCT---------------AACTGCC-TAAG-------T-TAACCT---GAAAGCCAAA---TCAATTG-ACT-------TTG-AAAAGG-C--GAGCTTAAGCT-AACATTTAATCA---------AA-TACCAT--------------------------------CT-------------------------------------------TAATCACT--------------------------------ATCT---ATGATT-------ATTCAATT--ACTAAT---------------------------------------------------T-TCT---CC-A-------------------------CTTT-------------T--A-------TGACCAATTCTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGC
droSec2 scaffold_5:3284118-3284370 + dse_1398 CTAC---AAAT----GGCCGCCAGTCTCCAA-GGTGGCGAACAGCAAGAGGTC---GCG---GAGT--A----AA-C--------GCCCT---------------AACTACC-TAAG-------T-TAACCT---TAAAGCCAAA---TCAATGG-ACT-------TTG-AAAAGG-C--GAGCTTAAGCT-AACATTTAATCA---------AT-TACCAT--------------------------------CT-------------------------------------------TAATCACT--------------------------------ATCTGGTGTGATT-------ATTCAATT--ACTAAT---------------------------------------------------T-TCT---CC-A-------------------------CTTT-------------T--A-------TGACCAATTCTAGCGAGGTTGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGC
dm3 chr2L:5202913-5203165 + CTAC---AAAT----GGCTGCCAGTCTCCAA-GGTGGCGAACAGCAAGAGGTC---GCC---GAGC--A----AA-C--------GCCCT---------------AACTATC-TAAG-------T-TAACCT---TAAAGCCAAA---TCAATGG-ACT-------TTG-GAAAGG-C--GAGCTTAAGCT-AACATTTAATCG---------AT-TACTAC--------------------------------CA-------------------------------------------TAATCACT--------------------------------ATCTGCTATGATT-------ATTCAATT--ACTAAT---------------------------------------------------T-TCT---CC-A-------------------------CTTT-------------T--T-------TGACCAATTCTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAATTGGCAGC
droEre2 scaffold_4929:5280916-5281166 + CCAC---AAAT----GGCCGCCAGTCTCCAA-GGTGGCGCACAGCAAGAGGTC---GGG---AGTA--A----CC-A--------GC-CT---------------AACTGCC-TAAG-------T-TAGCCT---TAAAGCCAAG---GCAATGG-ACT-------TTG-GCGAGG-C--AAGC-TAAGCT-AACATTTAATCG---------AT-TACCAT--------------------------------CT-------------------------------------------TAGTCGCT--------------------------------ATCTTCCATGATT-------GTTCCATA--ACTAAT---------------------------------------------------T-TAC---CC-A-------------------------CTTT-------------T--A-------TGGCCAATTCCAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGC
droYak3 2L:10324458-10324732 - CTGC---AAAT----GGCCGCCAGTCTCCAA-GGTGGCGAACAGCAAGAGGTC---GTG---GGCAGTG----AG-C--------ACCCC---------------AACTGCC-TAAG-------T-CAACCT---TAAAGCCAAT--ATCAATGG-ACT-------TTG-GCAAGG-C--GAGCTTAAGCT-AACATTCAATCG---------AT-AACCAT--------------------------------CT-------------------------------------------TTATCGCT--------------------------------ATCTCTTGGGATT-------ATTCAATT--ACTAAT---------------------------------------------------T-TCT---GC-A-------------------------CTTTTATTTTTAT-TTTT--TATTTCTATGGCCCATTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGC
droEug1 scf7180000409005:1089735-1089990 + TCAC---AAAT----GGCTGCCAGACTCCAG-GGTGGAGCACAGCAAGAGGTC---GGA---ATGT--A----TA-G--------GC-CT---------------AGCTGCC-TAAG-------T-T--GCT---GCAAGCCAAC---TCTATTG-ACT-------CTG-GCAAGG-C--AGTCTTAAGCT-AACAAGCATTCA---------GT-ACATAT--------------------------------AA-------------------------------------TAATAATAATTATTATTACAAATTTGTATTAATAACTTACATT--------------------------------------------------------------------------------------------TTT---AC-G--------------------------TTT-------------T--C-------CTATCAACTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGC
droBia1 scf7180000302261:642198-642457 + CCGC---AAAT----GGCAGCCAGGCTCCAG-GGTGGAGGACAGCAAGGGGCT---GGG---AACT--A----TG-T--------GC-CT---------------AAAGGCC--AAG-------AAT--GCC---CAAAGTCCGA---CCAATGA-ACT------TTGG-GCGAGG-C--AAGCTTAAGCT-AACAAAAAAT-A---------AT-A---AT--------------------------------CA-------------------------------------------TAAACAT---------------------------------AT------------------------CTTATAT----------------------------------------ATTTTTAATTT---A-TCC---TAATTGGTTACTAATT--TGT------------------TACCTTATTCT-------CCACCCATTCTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGC
droTak1 scf7180000415704:327054-327297 - TCAC---CGAT----GGCTGCCAGTCTCCAG-GGTGGAGGACAGCAAGAGGTT---GGA---AACT--A----TG-T--------GCC-----------------------------------------------CAAAGTCCAA---TCAATGG-ATT-------TTG-GAAAGG-CCTAAGCCTGAGCT-AACAAATAAATA---------GT-TACCAT--------------------------------AA-------------------------------------------TAATAATT--------------------------------AT-----------------------AAT--AATAAT---------------------------------------------------A-TCA---TTATTAATTACTAATTAT-GTTTTACCCCT--TTA-----------T--T-------TTACCCACTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGTAACTGGCAGC
droEle1 scf7180000491273:14358-14546 - CTTT---A---------------------------------------------------------------------------------------------------TTGCT-TA-----------TAACTA---CAAAAACAAA---TCAATA-----------------------------------------------------------------------------------------------------------------------CCGA--CTT-----------TGTTA-------------------------------------------------T--------------------------------GTGTTATTTTGGATTG-GTAACATTAATAGTTGTATTTAAT--TTC-TTATCTG-TATCAATTATTAATT--TGT------------------TATTTTCTAAA-------ATGTTTATTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGC
droRho1 scf7180000779577:12745-13068 - TCAC---AAAT----GGCCACCAGACTCCAG-GGTGGAGTACAGCAAGAGATC---GGG---AACT--A----TA-T--------GC-CG---------------AACTGCC-TAAG-----------------------CTTAA---ATAA--A-ACT-------TTG-GCAAGG-C--AAGGCTAAGCT-AACAATCAAATT--------CATTACA--TTCAAAACAAGCCAATTGTGTATTGATAATAACTACAAACATTATATCAATACCTA--GTT-----------TGCTA-------------------------------------------------A--------------------------------GTGTTAT-TTGGATTG-GTTACAGT---AGTTGTAATTTAT--TTC-TTATTTT-TATCGGTTTTTAATG--GGT------------------TATTCTGTAAT----------ATTTTTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGC
droFic1 scf7180000453842:1045168-1045496 - TCAC---CAAT----AACTGCCAGTCTCCAG-TGTGGAGTAAAGCAAGATATC---GGG---AACT--A----TA----------GCTCA---------------AGT------------------T--GCT---TAAAGCTAAA---ATAAAAA-ACC-----TTTTG-GCAAGG-C--CAGCTTAAGCT-AACAATGATT-A---CCAATCATTTCA--TAATAGTAAAGCTGATTTTGTATTGATAAAGATTAA---GTTCTTA---------------GCAATATG------------------------------------------------------------------------AAATC------GAAAATAGTGTAAT-TTGGATTG-GTGAAAGTCTTGTTTATATTTCAT---AC-CTACCCA-TACCCTTTATTAATT--AAT------------------TAT-------T-------TTACCACTTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGC
droKik1 scf7180000302643:665996-666340 - TCATC--CGAT----GGCTGCCAGTCTCCAG-GGTGGAGCACAGCAAACGGCGGTGGTGGGGAACT--ACCTATGCTACCTGCTTGC-CA---------------AGC------------------T--GCTTACTAAAGCCTCAATTTCCAAGG-ACT-------TTG-GGAAGG-CTTTGGCTTAGGCA-AACATATAAACATAACTCT--AT-TATCATCCA-----AGTTGAGTCTGTGTT-----------CCAACACTGAATCAACT---AAT---GCTGTAT------------------------------------------------------------------------GGAGTC--ACTAGATCTTTGTGT------GCATTGTGTGCA--TTTTTTT------------------------TATAATTTACTAATTAT-AAAT-AC-TCT--TTA------C-TTAT--T-------CCAC-CCTTTCAGCGAGGTCGGCCGTCTAACGTGTCCGCTCTGCACGCAGCGTAACTGGCAGC
droAna3 scaffold_12916:9962589-9962848 - TGAC---CAAT----GGCCGCCAGACTCCAG-GGTGGAGCACAGCAAGAGATG---TGG---ATCT--T----CA-C--------GCTC----------------AA-AGTC-TAAGCTGCT-G-CT--TTT---TTAAGACTCG---TCTAAGA-AAT-------TTG-ACAAGA-A--CAGCTTAAGCTTAACAATTAATTC--------------TCAC------------------------------------------------------------------------A-------------------------------------------------CTAAGATTGGTTGCGGTTTAATT--ACTAGT---------------------------------------------------T-AAT---AC-ACCCTTATTAATT--AA---------AT--------TCTTTT----T-------T--AAACTTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACGCAGCGTAATTGGCAGC
droBip1 scf7180000396580:1065641-1065897 + TTTC---CAAT----GGCTGCCAGACTCCAG-GATGGAGCACAGCAAGAGGTG---TGG---AGCT--T----CA-T--------GCCC----------------AA-AGTC-TAAGCTGCT-G-CT--GCT---TCAATACTTG---TCAAAGA-TAT-------TTG-ACAAAC-A--CAGCTTAAGCTTAACAAATA-------------CT-TATCAT------------------------------------------------------------------------ACTA-------------------------------------------------AGAGTGGTTGTGGTGCAGTT--ACTAGC---------------------------------------------------T-TATCAG-T--TCCTTACTAATT--AA---------CT------------TT----T-------T--AATCTTTCAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACGCAGCGTAATTGGCAGC
dp5 4_group3:2689085-2689320 - CTACCC-AAAT----GACTGCCAGACTCCAA-GGTGGAGCACAGCAAAAGAGG---GAG---AACT--A----TGAT--------ACTC----------------AA---------GCGGCA-G-CT--GCT---TAAAGCCAAA---TTAAAGCTATT-------TTG-ATATGGCC--CAGCTTGTGCT-AACAATTAGATC---------GT-ACTCAT--------------------------------CT---------------------------------------------------------------------------------------GCT--GA---------ATTCAAAT--ACTAAT---------------------------------------------------A-TCT---TT-T-------------------------TCTT-------------T--T-------TGTC-TTCCTTAGCGAGGTCGGCCGTCTAACGTGTCCGCTCTGCACGCAACGCAACTGGCAGC
droPer2 scaffold_1:4179907-4180142 - CTACCC-AAAT----GACTGCCAGACTCCAA-GGTGGAGCACAGCAAAAGAGG---GAG---AACT--A----TGAT--------ACTC----------------AA---------GCGGCA-G-CT--GCT---TAAAGCCAAA---TTAAAGCTATT-------TTG-ATATGGCC--CAGATTGTGCT-AACAATTAGATC---------GT-ACTCAT--------------------------------CT---------------------------------------------------------------------------------------GCT--GA---------ATTCAAAT--ACTAAT---------------------------------------------------A-TCT---TT-T-------------------------TCTT-------------T--T-------TGTC-TTCCTTAGCGAGGTCGGCCGTCTAACGTGTCCGCTCTGCACGCAACGCAACTGGCAGC
droWil2 scf2_1100000004585:1077844-1078078 - CTAT---TTGTTTTGATCCAACAGACTCCAG-GGTGGAGCACAGCAAATGATA---CAA---AGCT--A----CC-G--------G------AAGATTGATATTCAACTGTATGATG-------T-TTGTC---------------------------------------TCACGG-C---TGCGAATGCT-AACAACGAAA---------------ATAAT--------------------------------CT---------------------------------------ATAATATT------TGTAA------ATTC-----------------------------------------CTAATTT--------------------------------------------------------------------------AATTAA-AATTTATCTTT--TTA-----------T--T-------TATAATTTTGCAGCGAGGTCGGCCGCCTAACCTGTCCGCTCTGCACGCAACGTAATTGGCAAC
droVir3 scaffold_12963:6396292-6396536 - dvi_10636 TCTC---AATA----GGCTGCCAGTCTCCAGGGGTGGAGCACAGCGAGCAGCT---TGG---AGCT----------T--------GC-CT---------------GGACGTC---------AGCTCT--GTT---CAAAGTCGCG---CCAAA-G-ACT-------TTG-CTCGGATC--CAGC--AAGCT-TACATAA-CT-A---CCTA--AT-AAACGT--------------------------------TC-------------------------------------------CAGTTAAT--------------------------------GTTTAA---AAT------------------ATT-----------------------------------------------------T-CTAACCGTT-T-----------------------TCT--TTA------T-TTAT--CCCTTCTAT-----AAAACAGTGAGGTCGGCCGCCTAACGTGTCCGCTCTGCACGCAACGCAATTGGCAGC
droMoj3 scaffold_6500:25540763-25540990 - dmo_1641 TTCTCTCAATG----GGCTGCCAGACTCCAG-GGCGGAGCACAGTAACGC------------AGCT----------T--------GC-CTGGAAATCTGCTA---AACTGTT-CTAT-----------------------TTGAG---GTAC--A-GCTTTGAATAGACACT--------CGGTGCAGGCT-TACACTCTCCCA---------CT---------------------------------------------------------------------------------------------------------------------------------CCATGTCT-------GTTCAGCTAGACTAAT---------------------------------------------------CACGC---CC-T-------------------------CTTC-------------T--A-------TCGCCCA-CACAGTGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACGCAGCGCAATTGGCAGC
droGri2 scaffold_15252:9624100-9624325 - TTTT----ATT----GGCCGCCAGTCTCCAG-GGCGGAGCACAGTAAACACTT---GG----AGCT----------T--------GC-CT----------------------------------------------------------------------------GTG-GCAATG-C-------TGATTC-GACTTTTAACCG---------GT-CAGCA----------------------------------------------------------------ACATGCAACAGC----------CTTGCAAGTTTACATTCCTAGTTGGCATTTTTATATGGTA---------------TACTT--TCTAAT---------------------------------------------------T-ATC---GA-----------------A---------CT------------------T-------TGTCTGTCTATAGTGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACGCAACGCAACTGGCAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTAC---AAAT----GGCCGCCAGTCTCCAA-GGTGGCGAACAGCAAGAGGTC---GCG---GAGT--A----AA-C--------GCCCT---------------AACTGCC-TAAG-------T-TAACCT---GAAAGCCAAA---TCAATTG-ACT-------TTG-AAAAGG-C--GAGCTTAAGCT-AACATTTAATCA---------AA-TACCAT--------------------------------CT-------------------------------------------TAATCACT--------------------------------ATCT---ATGATT-------ATTCAATT--ACTAAT---------------------------------------------------T-TCT---CC-A-------------------------CTTT-------------T--A-------TGACCAATTCTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACACAGCGAAACTGGC...2712.00200200000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGTCGGCCGGCTAACGTGT............................2411.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGTCGGCCGGCTAACGTGG............................2411.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGCTCTGCACACAGC............1911.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGTCCGCTCTGCACA................1911.00101000000000000000
.......................................................................................................................................................................TG-AAAAGG-C--GAGCTTAAGCT-AACATTT...................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-A-------------------------CTTT-------------T--A-------TGACCAATTCTA...................................................2111.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGTGTCCGCTCTGC...................1811.00101000000000000000
.......................................AACAGCAAGAGGTC---GCG---GAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACACAGC............1811.00100100000000000000
...................GCCAGTCTCCAA-GGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
...................GCCAGTCTCCAA-GGTGGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGTCGGCCGGCTAA.................................1811.00100001000000000000
......................................................................................................................................................................TTG-AAAAGG-C--GAGCTTAAGCT-AACATTT...................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
......................................GAACAGCAAGAGGTT---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15180.06100000000001000000
droSec2
CTAC---AAAT----GGCCGCCAGTCTCCAA-GGTGGCGAACAGCAAGAGGTC---GCG---GAGT--A----AA-C--------GCCCT---------------AACTACC-TAAG-------T-TAACCT---TAAAGCCAAA---TCAATGG-ACT-------TTG-AAAAGG-C--GAGCTTAAGCT-AACATTTAATCA---------AT-TACCAT--------------------------------CT-------------------------------------------TAATCACT--------------------------------ATCTGGTGTGATT-------ATTCAATT--ACTAAT---------------------------------------------------T-TCT---CC-A-------------------------CTTT-------------T--A-------TGACCAATTCTAGCGAGGTTGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................GTGGCGAACAGCAAGAGGTC---G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030300
...................................GGCGAACAGCAAGAGGTC---G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGGCCGGCTAACGTGTCC..........................2311.0010010
..............................................................................................................................................AAA---TCAATGG-ACT-------TTG-AAAAGG-C--GAGC..................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACACAGCGAAA........2211.0010010
..................................TGGCGAACAGCAAGAGGTC---GCG---GA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
............................................................................C--------GCCCT---------------AACTACC-TAAG-------T-T...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
.................................GTGGCGAACAGCAAGAGGTC---GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGCACACAGCGAAACTGGC...2211.0010010
.......................................................................................................................................................................TG-AAAAGG-C--GAGCTTAAGCT-AACATT....................................................................................................................................................................................................................................................................................................................................................................2611.0010010
dm3
CTAC---AAAT----GGCTGCCAGTCTCCAA-GGTGGCGAACAGCAAGAGGTC---GCC---GAGC--A----AA-C--------GCCCT---------------AACTATC-TAAG-------T-TAACCT---TAAAGCCAAA---TCAATGG-ACT-------TTG-GAAAGG-C--GAGCTTAAGCT-AACATTTAATCG---------AT-TACTAC--------------------------------CA-------------------------------------------TAATCACT--------------------------------ATCTGCTATGATT-------ATTCAATT--ACTAAT---------------------------------------------------T-TCT---CC-A-------------------------CTTT-------------T--T-------TGACCAATTCTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAATTGGCAGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................GTGGCGAACAGCAAGAGGTC---G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000001000000000000
...................................GGCGAACAGCAAGAGGTC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
................................GGTGGCGAACAGCAAGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................TTG-GAAAGG-C--GAGCTTAAGCT-AACATTT...................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGGCCGGCTAACGTGTCCGCTC......................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GGCGAACAGCAAGAGGTC---GCC---GAGC--A----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GTGGCGAACAGCAAGAGGTC---GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTGTCCGCTCTGCACACAGCGAA.........2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGTGTCCGCTCTGCACA................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------TGACCAATTCTAGCGAGGTCGGCCGGC....................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGCACACAGCGAAATTGGCA..2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACACAGC............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGTCCGCTCTGCACACAGCG...........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
....................................................C---GCC---GAGC--A----AA-C--------GCCCT---------------AACTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TGG-ACT-------TTG-GAAAGG-C--GAGCTTAAGC............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAA-GGTGGCGAACAGCAAGAGGTC---G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTCCGCTCTGCACACAGC............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTGTCCGCTCTGCACACAGCGAAA........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TCTGCTATGATT-------ATTCAATT--ACTAAT---------------------------------------------------................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGGCCGGCTAACGT..............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCGAGGTCGGCCGGCTAACGTG.............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................G-ACT-------TTG-GAAAGG-C--GAGCTTAAGC............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AA-GGTGGCGAACAGCAAGAGGTC---GCC---GAGC--A----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGCTCTGCACACAG.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................GCTGCCAGTCTCCAA-GGTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................................................ATCG---------AT-TACTAC--------------------------------CA-------------------------------------------TAATCACT--------------------------------A......................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................ATGG-ACT-------TTG-GAAAGG-C--GAGCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGTCGGCCGGCTAACGTGTCCGC........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................ACT-------TTG-GAAAGG-C--GAGCTTAA..............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TGGCGAACAGCAAGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTCCGCTCTGCACACAGCGG..........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTGTCCGCTCTGCACA................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGTCCGCTCTGCACA................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGTCGGCCGGCTAACGTGTCCGCT.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................................................................................................................................ATGG-ACT-------TTG-GAAAGG-C--GAGCTTAAGC............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................TACTAC--------------------------------CA-------------------------------------------TAATCACT--------------------------------ATCTGCTATGA............................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................T-------TTG-GAAAGG-C--GAGCTTAAGCT-..........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGTCGGCCGGCTAACGT..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................A-GGTGGCGAACAGCAAGAGGTC---GCC---GAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCTAACGTGTCCGCTCTGCACACAGC............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................GG-C--GAGCTTAAGCT-AACATTT...................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTAACGTGTCCGCTCTGCAC.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCTAACGTGTCCGCTCTGCA..................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTCCGCTCTGCACACAGCGAA.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GTGGCGAACAGCAAGAGGTC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droEre2
CCAC---AAAT----GGCCGCCAGTCTCCAA-GGTGGCGCACAGCAAGAGGTC---GGG---AGTA--A----CC-A--------GC-CT---------------AACTGCC-TAAG-------T-TAGCCT---TAAAGCCAAG---GCAATGG-ACT-------TTG-GCGAGG-C--AAGC-TAAGCT-AACATTTAATCG---------AT-TACCAT--------------------------------CT-------------------------------------------TAGTCGCT--------------------------------ATCTTCCATGATT-------GTTCCATA--ACTAAT---------------------------------------------------T-TAC---CC-A-------------------------CTTT-------------T--A-------TGGCCAATTCCAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................TGGCGCACAGCAAGAGGTC---GG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000110
..................................TGGCGCACAGCAAGAGGTC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0021000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAACGTGTCCGCTCTGC...................1911.0010100000
...................................GGCGCACAGCAAGAGGTC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.................................GTGGCGCACAGCAAGAGGTC---GG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCTAACGTGTCCGCT.......................1911.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGTCCGCTCTGCACACA..............2111.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTGTCCGCTCTGCAC.................1911.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCTGCACACAGCGAAACTGGCAGC2711.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGTGTCCGCTCTGCA..................1911.0010001000
..................................TGGCGCACAGCAAGAGGTC---G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGTCGGCCGGCTAACGTGTCCGCTC......................2911.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGTCGGCCGGCTAACGTGTCCGC........................2811.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGTGTCCGCTCTGCAC.................2011.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGTGTCCGCTCTGC...................1811.0010000010
.................................GTGGCGCACAGCAAGAGGTC---GGG---AGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
...................................GGCGCACAGCAAGAGGTC---GGG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTCCGCTCTGCACACAGCGAAA........2511.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTAACGTGTCCGCTCTGC...................2011.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACAGCGAAACTGGCA..1911.0011000000
.................................GTGGCGCACAGCAAGAGGTC---GGG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
droYak3
CTGC---AAAT----GGCCGCCAGTCTCCAA-GGTGGCGAACAGCAAGAGGTC---GTG---GGCAGTG----AG-C--------ACCCC---------------AACTGCC-TAAG-------T-CAACCT---TAAAGCCAAT--ATCAATGG-ACT-------TTG-GCAAGG-C--GAGCTTAAGCT-AACATTCAATCG---------AT-AACCAT--------------------------------CT-------------------------------------------TTATCGCT--------------------------------ATCTCTTGGGATT-------ATTCAATT--ACTAAT---------------------------------------------------T-TCT---GC-A-------------------------CTTTTATTTTTAT-TTTT--TATTTCTATGGCCCATTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGTCCGCTCTGCACACAGCGAAAC.......2711.00100000010000
...................................GGCGAACAGCAAGAGGTC---GTG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACACAGCGAAACTG.....2511.00101000000000
.........................................................................................................................................................GG-ACT-------TTG-GCAAGG-C--GAGCT.................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
......................................................................................................................................................................TTG-GCAAGG-C--GAGCTTAAGCT-AAC.......................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACACAGCGAA.........2111.00100010000000
.......................................................................................................................................................................TG-GCAAGG-C--GAGCTTAAGCT-AACATTC...................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.......................GTCTCCAA-GGTGGCGAACAGCAAGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
...........................................................................................................................................................................CAAGG-C--GAGCTTAAGCT-AACATTC...................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTAACGTGTCCGCTCTGCAC.................2211.00100010000000
...................................GGCGAACAGCAAGAGGTC---GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGTGTCCGCTCTGCACACAGCGAA.........2811.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGCTCTGCACACAGCGA..........2211.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCTAACGTGTCCGCTCTGCA..................2411.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGGCTAACGTGTCCGCTCTG....................2311.00101000000000
droEug1
TCAC---AAAT----GGCTGCCAGACTCCAG-GGTGGAGCACAGCAAGAGGTC---GGA---ATGT--A----TA-G--------GC-CT---------------AGCTGCC-TAAG-------T-T--GCT---GCAAGCCAAC---TCTATTG-ACT-------CTG-GCAAGG-C--AGTCTTAAGCT-AACAAGCATTCA---------GT-ACATAT--------------------------------AA-------------------------------------TAATAATAATTATTATTACAAATTTGTATTAATAACTTACATT--------------------------------------------------------------------------------------------TTT---AC-G--------------------------TTT-------------T--C-------CTATCAACTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGCSizeHit CountTotal NormTotal
No Reads
droBia1
CCGC---AAAT----GGCAGCCAGGCTCCAG-GGTGGAGGACAGCAAGGGGCT---GGG---AACT--A----TG-T--------GC-CT---------------AAAGGCC--AAG-------AAT--GCC---CAAAGTCCGA---CCAATGA-ACT------TTGG-GCGAGG-C--AAGCTTAAGCT-AACAAAAAAT-A---------AT-A---AT--------------------------------CA-------------------------------------------TAAACAT---------------------------------AT------------------------CTTATAT----------------------------------------ATTTTTAATTT---A-TCC---TAATTGGTTACTAATT--TGT------------------TACCTTATTCT-------CCACCCATTCTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGCSizeHit CountTotal NormTotal
No Reads
droTak1
TCAC---CGAT----GGCTGCCAGTCTCCAG-GGTGGAGGACAGCAAGAGGTT---GGA---AACT--A----TG-T--------GCC-----------------------------------------------CAAAGTCCAA---TCAATGG-ATT-------TTG-GAAAGG-CCTAAGCCTGAGCT-AACAAATAAATA---------GT-TACCAT--------------------------------AA-------------------------------------------TAATAATT--------------------------------AT-----------------------AAT--AATAAT---------------------------------------------------A-TCA---TTATTAATTACTAATTAT-GTTTTACCCCT--TTA-----------T--T-------TTACCCACTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGTAACTGGCAGCSizeHit CountTotal NormTotal
No Reads
droEle1
CTTT---A---------------------------------------------------------------------------------------------------TTGCT-TA-----------TAACTA---CAAAAACAAA---TCAATA-----------------------------------------------------------------------------------------------------------------------CCGA--CTT-----------TGTTA-------------------------------------------------T--------------------------------GTGTTATTTTGGATTG-GTAACATTAATAGTTGTATTTAAT--TTC-TTATCTG-TATCAATTATTAATT--TGT------------------TATTTTCTAAA-------ATGTTTATTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGCSizeHit CountTotal NormTotal
No Reads
droRho1
TCAC---AAAT----GGCCACCAGACTCCAG-GGTGGAGTACAGCAAGAGATC---GGG---AACT--A----TA-T--------GC-CG---------------AACTGCC-TAAG-----------------------CTTAA---ATAA--A-ACT-------TTG-GCAAGG-C--AAGGCTAAGCT-AACAATCAAATT--------CATTACA--TTCAAAACAAGCCAATTGTGTATTGATAATAACTACAAACATTATATCAATACCTA--GTT-----------TGCTA-------------------------------------------------A--------------------------------GTGTTAT-TTGGATTG-GTTACAGT---AGTTGTAATTTAT--TTC-TTATTTT-TATCGGTTTTTAATG--GGT------------------TATTCTGTAAT----------ATTTTTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGCSizeHit CountTotal NormTotal
No Reads
droFic1
TCAC---CAAT----AACTGCCAGTCTCCAG-TGTGGAGTAAAGCAAGATATC---GGG---AACT--A----TA----------GCTCA---------------AGT------------------T--GCT---TAAAGCTAAA---ATAAAAA-ACC-----TTTTG-GCAAGG-C--CAGCTTAAGCT-AACAATGATT-A---CCAATCATTTCA--TAATAGTAAAGCTGATTTTGTATTGATAAAGATTAA---GTTCTTA---------------GCAATATG------------------------------------------------------------------------AAATC------GAAAATAGTGTAAT-TTGGATTG-GTGAAAGTCTTGTTTATATTTCAT---AC-CTACCCA-TACCCTTTATTAATT--AAT------------------TAT-------T-------TTACCACTTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACACAGCGAAACTGGCAGCSizeHit CountTotal NormTotal
No Reads
droKik1
TCATC--CGAT----GGCTGCCAGTCTCCAG-GGTGGAGCACAGCAAACGGCGGTGGTGGGGAACT--ACCTATGCTACCTGCTTGC-CA---------------AGC------------------T--GCTTACTAAAGCCTCAATTTCCAAGG-ACT-------TTG-GGAAGG-CTTTGGCTTAGGCA-AACATATAAACATAACTCT--AT-TATCATCCA-----AGTTGAGTCTGTGTT-----------CCAACACTGAATCAACT---AAT---GCTGTAT------------------------------------------------------------------------GGAGTC--ACTAGATCTTTGTGT------GCATTGTGTGCA--TTTTTTT------------------------TATAATTTACTAATTAT-AAAT-AC-TCT--TTA------C-TTAT--T-------CCAC-CCTTTCAGCGAGGTCGGCCGTCTAACGTGTCCGCTCTGCACGCAGCGTAACTGGCAGCSizeHit CountTotal NormTotal
No Reads
droAna3
TGAC---CAAT----GGCCGCCAGACTCCAG-GGTGGAGCACAGCAAGAGATG---TGG---ATCT--T----CA-C--------GCTC----------------AA-AGTC-TAAGCTGCT-G-CT--TTT---TTAAGACTCG---TCTAAGA-AAT-------TTG-ACAAGA-A--CAGCTTAAGCTTAACAATTAATTC--------------TCAC------------------------------------------------------------------------A-------------------------------------------------CTAAGATTGGTTGCGGTTTAATT--ACTAGT---------------------------------------------------T-AAT---AC-ACCCTTATTAATT--AA---------AT--------TCTTTT----T-------T--AAACTTTTAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACGCAGCGTAATTGGCAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACGCAGCGT..........2011.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTAACGTGTCCGCTCTGCACGC...............2411.001010000
............................................................................................................................................................AAT-------TTG-ACAAGA-A--CAGCT.................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
.........................................................GG---ATCT--T----CA-C--------GCTC----------------AA-AGTC-TAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGGCTAACGTGTCCGCTCTGCACGC...............2811.001010000
.........AT----GGCCGCCAGACTCCAG-GGTGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGTCGGCCGGCTAACGTGTC...........................2511.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTAACGTGTCCGCTCT.....................1811.001010000
....................................GAGCACAGCAAGAGATG---TG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCTAACGTGTCCGCTC......................2011.001100000
..................................................ATG---TGG---ATCT--T----CA-C--------GCTC----------------AA-AGTC-TAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
....................................................................................................................................................................................CAGCTTAAGCTTAACAATT...................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..........................................................G---ATCT--T----CA-C--------GCTC----------------AA-AGTC-TAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACGCAGCGTA.........2111.001000010
.....................................................................................................................................................CTAAGA-AAT-------TTG-ACAAGA-A--CAGC..................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGCACGCAGCGTAAT.......1911.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGGCCGGCTAACGTGTCCGCT.......................2611.001010000
droBip1
TTTC---CAAT----GGCTGCCAGACTCCAG-GATGGAGCACAGCAAGAGGTG---TGG---AGCT--T----CA-T--------GCCC----------------AA-AGTC-TAAGCTGCT-G-CT--GCT---TCAATACTTG---TCAAAGA-TAT-------TTG-ACAAAC-A--CAGCTTAAGCTTAACAAATA-------------CT-TATCAT------------------------------------------------------------------------ACTA-------------------------------------------------AGAGTGGTTGTGGTGCAGTT--ACTAGC---------------------------------------------------T-TATCAG-T--TCCTTACTAATT--AA---------CT------------TT----T-------T--AATCTTTCAGCGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACGCAGCGTAATTGGCAGCSizeHit CountTotal NormTotal
No Reads
dp5
CTACCC-AAAT----GACTGCCAGACTCCAA-GGTGGAGCACAGCAAAAGAGG---GAG---AACT--A----TGAT--------ACTC----------------AA---------GCGGCA-G-CT--GCT---TAAAGCCAAA---TTAAAGCTATT-------TTG-ATATGGCC--CAGCTTGTGCT-AACAATTAGATC---------GT-ACTCAT--------------------------------CT---------------------------------------------------------------------------------------GCT--GA---------ATTCAAAT--ACTAAT---------------------------------------------------A-TCT---TT-T-------------------------TCTT-------------T--T-------TGTC-TTCCTTAGCGAGGTCGGCCGTCTAACGTGTCCGCTCTGCACGCAACGCAACTGGCAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T-T-------------------------TCTT-------------T--T-------TGTC-TTCCTTAG..................................................2012.0020000000020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTCTGCACGCAACGCAACC......2211.0010010000000
.................................GTGGAGCACAGCAAAAGAGG---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
...................................GGAGCACAGCAAAAGAGG---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
........................................................................................................................................................................G-ATATGGCC--CAGCTTGTGCT-AA........................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
................................................................CT--A----TGAT--------ACTC----------------AA---------GCGGCA-G-CT--GCT---T..................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000001000
..................................TGGAGCACAGCAAAAGAGG---G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............GACTGCCAGACTCCAA-GGTGGAGCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..........................................................................GAT--------ACTC----------------AA---------GCGGCA-G-CT--GCT---T..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
.................................GTGGAGCACAGCAAAAGAGG---GAG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
...................................GGAGCACAGCAAAAGAGG---GAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................A-GGTGGAGCACAGCAAAAGAGG---G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...................................GGAGCACAGCAAAAGAGG---GAG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGCTCTGCACGCAAC............2011.0010100000000
...............................................AAGAGG---GAG---AACT--A----TGAT--------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000000
.............................................................................................................................................................................TGGCC--CAGCTTGTGCT-AACAATT...................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................GTGGAGCACAGCAAAAGAGG---GAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTCTGCACGCAACGCAACT......2211.0010100000000
..............................................................AACT--A----TGAT--------ACTC----------------AA---------GCGGCA-G-C............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
...................................GGAGCACAGCAAAAGAGG---GAG---AAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCTCTGCACGCAACGCAACTGGC...2611.0010100000000
droPer2
CTACCC-AAAT----GACTGCCAGACTCCAA-GGTGGAGCACAGCAAAAGAGG---GAG---AACT--A----TGAT--------ACTC----------------AA---------GCGGCA-G-CT--GCT---TAAAGCCAAA---TTAAAGCTATT-------TTG-ATATGGCC--CAGATTGTGCT-AACAATTAGATC---------GT-ACTCAT--------------------------------CT---------------------------------------------------------------------------------------GCT--GA---------ATTCAAAT--ACTAAT---------------------------------------------------A-TCT---TT-T-------------------------TCTT-------------T--T-------TGTC-TTCCTTAGCGAGGTCGGCCGTCTAACGTGTCCGCTCTGCACGCAACGCAACTGGCAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........AAT----GACTGCCAGACTCCAA-G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003300000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACGCAACGCAACTG.....2512.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACGCAACGCAACT......2412.002200000
...........................CCAA-GGTGGAGCACAGCAAAAGAGG---GA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000002
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGGCCGTCTAACGG..............................1911.001100000
.................................GTGGAGCACAGCAAAAGAGG---GAG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
...................................GGAGCACAGCAAAAGAGG---GA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
...........................................GCAAAAGAGG---GAG---AACT--A----T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGTCGGCCGTCTAACGT..............................2011.001100000
.................................GTGGAGCACAGCAAAAGAGG---GAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...........................CCAA-GGTGGAGCACAGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAACGTGTCCGCTCTGCACGC...............2411.001100000
...................................GGAGCACAGCAAAAGAGG---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGGCCGTCTAACGT..............................1911.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTGTCCGCTCTGCACGCA..............2211.001010000
droWil2
CTAT---TTGTTTTGATCCAACAGACTCCAG-GGTGGAGCACAGCAAATGATA---CAA---AGCT--A----CC-G--------G------AAGATTGATATTCAACTGTATGATG-------T-TTGTC---------------------------------------TCACGG-C---TGCGAATGCT-AACAACGAAA---------------ATAAT--------------------------------CT---------------------------------------ATAATATT------TGTAA------ATTC-----------------------------------------CTAATTT--------------------------------------------------------------------------AATTAA-AATTTATCTTT--TTA-----------T--T-------TATAATTTTGCAGCGAGGTCGGCCGCCTAACCTGTCCGCTCTGCACGCAACGTAATTGGCAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGTCCGCTCTGCACGCA..............2112.00220000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTAACCTGTCCGCTCTGCACGC...............2512.00210010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAACCTGTCCGCTCTGCA..................2112.00220000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGTCGGCCGCCTAACC...............................2112.00220000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCGGCCGCCTAACCTGTCCGCTC......................2612.00220000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTAACCTGTCCGCTCTGCA..................2211.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAACCTGTCCGCTCTGCACGCAAC............2711.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCTGTCCGCTCTGCACGC...............2111.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAACCTGTCCGCTCTGCACG................2311.00101000
...................AACAGACTCCAG-GGTGGAGCACAGCAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCTGTCCGCTCTGCACGCAAC............2411.00110000
........................................................CAA---AGCT--A----CC-G--------G------AAGATTGATATTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.........GTTTTGATCCAACAGACTCCAG-GGTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100010
..........................................................A---AGCT--A----CC-G--------G------AAGATTGATATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACCTGTCCGCTCTGCACGCAAC............2511.00110000
..................................TGGAGCACAGCAAATGATA---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCTAACCTGTCCGCTCTGCACGC...............2611.00110000
.................................GTGGAGCACAGCAAATGATA---CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
.................................................GATA---CAA---AGCT--A----CC-G--------G------AAGATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACCTGTCCGCTCTGCACG................2111.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAACCTGTCCGCTCTGCAC.................2211.00100010
.................................................GATA---CAA---AGCT--A----CC-G--------G------AAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACCTGTCCGCTCTGCAC.................2011.00100010
droVir3
TCTC---AATA----GGCTGCCAGTCTCCAGGGGTGGAGCACAGCGAGCAGCT---TGG---AGCT----------T--------GC-CT---------------GGACGTC---------AGCTCT--GTT---CAAAGTCGCG---CCAAA-G-ACT-------TTG-CTCGGATC--CAGC--AAGCT-TACATAA-CT-A---CCTA--AT-AAACGT--------------------------------TC-------------------------------------------CAGTTAAT--------------------------------GTTTAA---AAT------------------ATT-----------------------------------------------------T-CTAACCGTT-T-----------------------TCT--TTA------T-TTAT--CCCTTCTAT-----AAAACAGTGAGGTCGGCCGCCTAACGTGTCCGCTCTGCACGCAACGCAATTGGCAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................TGG---AGCT----------T--------GC-CT---------------GGACGTC---------AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................22111.0011000000000000002600010010000000000000000000000000000000000000010
.......................................................................................................................................................................TG-CTCGGATC--CAGC--AAGCT-TACATAA-..................................................................................................................................................................................................................................................................................................................................................................2618.008000000000000000113210000000000000000000000000000000000000000000
........................................................TGG---AGCT----------T--------GC-CT---------------GGACGTC---------AGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2318.008000000000000002420000000000000000000000000000000000000000000000
........................................................TGG---AGCT----------T--------GC-CT---------------GGACGTC---------A................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.007000000000000001310101000000000000000000000000000000000000000000
.........................................................GG---AGCT----------T--------GC-CT---------------GGACGTC---------AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2116.006000000000000002220000000000000000000000000000000000000000000000
........................................................TGG---AGCT----------T--------GC-CT---------------GGACGTC---------AG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2116.006001000000000000500000000000000000000000000000000000000000000000
......................................................................................................................................................................TTG-CTCGGATC--CAGC--AAGCT-TACATAA-..................................................................................................................................................................................................................................................................................................................................................................2715.005000000000000001220000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGTGTCCGCTCTGCAC.................2013.003010100000000000000000000000001000000000000000000000000000000000
....................................................T---TGG---AGCT----------T--------GC-CT---------------GGACGTC---------AG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003000000000000000000100020000000000000000000000000000000000000000
........................................................................................................................................................................G-CTCGGATC--CAGC--AAGCT-TACATAA-..................................................................................................................................................................................................................................................................................................................................................................2513.003000000000000000030000000000000000000000000000000000000000000000
....................................................T---TGG---AGCT----------T--------GC-CT---------------GGACGTC---------A................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000000000000201000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCGGATC--CAGC--AAGCT-TACAT.....................................................................................................................................................................................................................................................................................................................................................................2113.003100000000000000010000010000000000000000000000000000000000000000
..............................................................................................................................................................................GATC--CAGC--AAGCT-TACATAA-..................................................................................................................................................................................................................................................................................................................................................................2013.003002000000000000000000100000000000000000000000000000000000000000
....................................................T---TGG---AGCT----------T--------GC-CT---------------GGACGTC---------AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000200000000000000000000000000000000000000000000000
..........................................................................................................................................................................CTCGGATC--CAGC--AAGCT-TACATAA-..................................................................................................................................................................................................................................................................................................................................................................2412.002000000000000001010000000000000000000000000000000000000000000000
......................................................................................................................................................................TTG-CTCGGATC--CAGC--AAGC............................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000100000000000000000000001000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTAACGTGTCCGCTCTGCACGC...............2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAGGTCGGCCGCCTAAC................................2011.001010000000000000000000000000000000000000000000000000000000000000
.........................................................GG---AGCT----------T--------GC-CT---------------GGACGTC---------AGCTCT--GTT---CAAAGTCGCG---CC....................................................................................................................................................................................................................................................................................................................................................................................................................3911.001000000000000000000000000000000000000000000000000000000000100000
............................................CGAGCAGCT---TGG---AGCT----------T--------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
......................AGTCTCCAGGGGTGGAGCACAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................TG-CTCGGATC--CAGC--AAGCT-T.........................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTAACGTGTCCGCTCTGCACG................2411.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCGGATC--CAGC--AAGCT-TACATAA-..................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
........................................................TGG---AGCT----------T--------GC-CT---------------GGACGTC---------AGCTCT--.........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
..................................................GCT---TGG---AGCT----------T--------GC-CT---------------GGACGTC---------T................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
........................................................TGG---AGCT----------T--------GC-CT---------------GGACGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................T-------TTG-CTCGGATC--CAGC--AAGCT-TACATAA-..................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGGCCGCCTAACGTGTCC..........................2311.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................GTCGCG---CCAAA-G-ACT-------TTG-CTC.............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.........................................................GG---AGCT----------T--------GC-CT---------------GGACGTC---------AGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
....................................................T---TGG---AGCT----------T--------GC-CT---------------GGACGTC---------AGCTCT--G........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................CGGATC--CAGC--AAGCT-TACATAA-..................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCGGATC--CAGC--AAGCT-TACA......................................................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGTCCGCTCTGCACG................1911.001000000010000000000000000000000000000000000000000000000000000000
............................CAGGGGTGGAGCACAGCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGTCGGCCGCCTAACGTGTC...........................2311.001000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................AAA-G-ACT-------TTG-CTCGGATC--CAGC--AAGCT-TACATAC-..................................................................................................................................................................................................................................................................................................................................................................3411.001000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACGCAACG...........1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................TGG---AGCT----------T--------GC-CT---------------GGACGTC---------AGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
..........................................................G---AGCT----------T--------GC-CT---------------GGACGTC---------AGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
............................................CGAGCAGCT---TGG---AGCT----------T--------GC-CT---------------GGACGTC---------.................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000100000000000000000000000000000000000000000000000
........................................................TGG---AGCT----------T--------GC-CT---------------GGACGTC---------AGCTCT--G........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAACGTGTCCGCTCTGCACGCAACGC..........2911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCTAACGTGTCCGCTCTGCAC.................2411.001001000000000000000000000000000000000000000000000000000000000000
........................................................TGG---AGCT----------T--------GC-CT---------------GGACGTC---------AGCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................TCGGATC--CAGC--AAGCT-TACATT....................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
TCTC---AATA----GGCTGCCAGTCTCCAGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
.............................AGGGGTGGAGCACAGCGAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
droMoj3
TTCTCTCAATG----GGCTGCCAGACTCCAG-GGCGGAGCACAGTAACGC------------AGCT----------T--------GC-CTGGAAATCTGCTA---AACTGTT-CTAT-----------------------TTGAG---GTAC--A-GCTTTGAATAGACACT--------CGGTGCAGGCT-TACACTCTCCCA---------CT---------------------------------------------------------------------------------------------------------------------------------CCATGTCT-------GTTCAGCTAGACTAAT---------------------------------------------------CACGC---CC-T-------------------------CTTC-------------T--A-------TCGCCCA-CACAGTGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACGCAGCGCAATTGGCAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................GGAGCACAGTAACGC------------AGCT----------T--------GC-CT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.0010700003
..................................CGGAGCACAGTAACGC------------AGCT----------T--------GC-CT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.004300001
.....................................................................................................................................................................AGACACT--------CGGTGCAGGCT-TACACTC...................................................................................................................................................................................................................................................................................................................................................................2514.004300001
..................................CGGAGCACAGTAACGC------------AGCT----------T--------GC-C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.004000004
..................................CGGAGCACAGTAACGC------------AGCT----------T--------GC-CTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003300000
...................................GGAGCACAGTAACGC------------AGCT----------T--------GC-CTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003100002
.......................................................................................................................................................................ACACT--------CGGTGCAGGCT-TACACTC...................................................................................................................................................................................................................................................................................................................................................................2312.002200000
...................................GGAGCACAGTAACGC------------AGCT----------T--------GC-C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002100001
...................................GGAGCACAGTAACGC------------AGCT----------T--------GC-CTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
....................................................................................................................................................................................CGGTGCAGGCT-TACACTC...................................................................................................................................................................................................................................................................................................................................................................1812.002200000
....................................................................................................................................................................TAGACACT--------CGGTGCAGGCT-TACACTC...................................................................................................................................................................................................................................................................................................................................................................2612.002100001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACGCAGC............1811.001100000
..................................CGGAGCACAGTAACGC------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................GGAGCACAGTAACGC------------AGCT----------T--------GC-CTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.................................GCGGAGCACAGTAACGC------------AGCT----------T--------GC-CTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
...................................................................................................................AT-----------------------TTGAG---GTAC--A-GCTTTGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
....................................GAGCACAGTAACGC------------AGCT----------T--------GC-CTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................CGGAGCACAGTAACGC------------AGCT----------T--------GC-CTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGCTCTGCACGCAGCGCA.........2211.001100000
...................................GGAGCACAGTAACGC------------AGCT----------T--------GC-CTGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCAGCGCAATTGGCAGC2011.001100000
.............................................................................................................GTT-CTAT-----------------------TTGAG---GTAC--A-GCTTTGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACGCAGCGC..........2011.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTCTGCACGCAGCGCAAT.......2311.001001000
droGri2
TTTT----ATT----GGCCGCCAGTCTCCAG-GGCGGAGCACAGTAAACACTT---GG----AGCT----------T--------GC-CT----------------------------------------------------------------------------GTG-GCAATG-C-------TGATTC-GACTTTTAACCG---------GT-CAGCA----------------------------------------------------------------ACATGCAACAGC----------CTTGCAAGTTTACATTCCTAGTTGGCATTTTTATATGGTA---------------TACTT--TCTAAT---------------------------------------------------T-ATC---GA-----------------A---------CT------------------T-------TGTCTGTCTATAGTGAGGTCGGCCGGCTAACGTGTCCGCTCTGCACGCAACGCAACTGGCAGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGTCCGCTCTGCACGCAACG...........2311.00110
................GCCGCCAGTCTCCAG-GGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110

Generated: 05/19/2015 at 05:29 AM