ID:

dsi_18002

 Coordinate:

2r:11558719-11558952 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.31 -38.31 -38.21

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCATTAGCGGAAAGTGGAACCCAGGCGGCGCCAATGCCTACCAACAGCAGGTGAGAAGTGGGTCAAAATACAGGGGGTGTTTGGAAAACAGTGTCCAAATAACTTAAAGAATTTTACATTACTTAAACTGCATTCTAAAGTTTTTGTTGTATTTAAAGTATTTAAACACACCTCTATTTACCTTAATTTAATTTGATTTTGATTTACCACTAATTTTCGTTTCGTTTCTATTTTGTTCATTTGTTTGGTATGATTTCCCCTTGTCGGAATGGATGACCCATCAGGAGTACCAGCGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCC
**************************************************.......((((((((..((((((((((((((((((........)))))))).............((((..((..(((((.........)))))..)))))).((((.(((..((..........))..))).))))..............(((((((((....................................))))).)))).))))))))....))...))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M023
head
 SRR902008
ovaries
................................................................................................................................................................................................................................................................CCCCTTGTCGGAATGGATGACCC....................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GGTATGATTTCCGCTTG....................................................................... 17 1 8 1.50 12 0 12 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................CAGCGGAAGCCCTGGCAATT........................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...TTAGCGGAAAGTGGAACCCAGGCGGC................................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................TTCCCCTTGTCGGAATGGATGACC........................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..ATTAGCGGAAAGTGGAACCCAG...................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GTATGATTTCCGCTTG....................................................................... 16 1 11 0.45 5 0 5 0 0 0 0 0 0 0
.CATAAGAGGACAGTGGAAC.......................................................................................................................................................................................................................................................................................................................... 19 3 17 0.12 2 0 0 2 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TGTCCCATCTGGGGTACCA.......................................... 19 3 19 0.11 2 0 0 0 0 0 0 2 0 0
........................................................................................................................................................................................................................................................TATGATTTCCGCTTG....................................................................... 15 1 20 0.10 2 0 2 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GCTATGATTTCCGCTTG....................................................................... 17 2 20 0.10 2 0 0 0 0 0 2 0 0 0
..AGTAGAGGAAAGTGGAACTC........................................................................................................................................................................................................................................................................................................................ 20 3 11 0.09 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................GCTATGATTTCCGCTTGTCA.................................................................... 20 3 19 0.05 1 0 0 0 0 0 1 0 0 0
................................................AGGTGCGAAGTAGGTC.............................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................GAACCTGCGGAAGCCC................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................AAGCTCATTTGATTTTGATTT................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................TCGGTTCTATTTTGTTGGTTT............................................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGTAATCGCCTTTCACCTTGGGTCCGCCGCGGTTACGGATGGTTGTCGTCCACTCTTCACCCAGTTTTATGTCCCCCACAAACCTTTTGTCACAGGTTTATTGAATTTCTTAAAATGTAATGAATTTGACGTAAGATTTCAAAAACAACATAAATTTCATAAATTTGTGTGGAGATAAATGGAATTAAATTAAACTAAAACTAAATGGTGATTAAAAGCAAAGCAAAGATAAAACAAGTAAACAAACCATACTAAAGGGGAACAGCCTTACCTACTGGGTAGTCCTCATGGTCGCCTTCGGGACCGTTAAGTTACACGGGTATGGGTCATGCGG
**************************************************.......((((((((..((((((((((((((((((........)))))))).............((((..((..(((((.........)))))..)))))).((((.(((..((..........))..))).))))..............(((((((((....................................))))).)))).))))))))....))...))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
.............................................................................................................................................................................GATAAATGGATTTAAATTAAT............................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0
.............................CGTTTACGGATGGTTGTCTT............................................................................................................................................................................................................................................................................................. 20 2 2 0.50 1 0 0 1 0 0
............................................................................................CAGGTTTCTTGATTTTCTTA.............................................................................................................................................................................................................................. 20 2 2 0.50 1 0 1 0 0 0
...........................................................................................................................................................................................................................................................CTAAAGGGGAACAGGCAT................................................................. 18 2 10 0.30 3 0 2 0 0 1
.............................TGGTTAAGGATGGTTGGCGT............................................................................................................................................................................................................................................................................................. 20 3 4 0.25 1 1 0 0 0 0
................................................................................................................................................................................................................................................................................TACGGGGTAGTCGGCATGGT.......................................... 20 3 8 0.13 1 1 0 0 0 0
.............................................................................................................................................................................................................................................................................ACCTACTGGGCACTCCTAA.............................................. 19 3 13 0.08 1 0 0 0 1 0
..................TGGGTCCGCCGCAATT............................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:11558669-11559002 + dsi_18002 TCATTAGCGGAAAGTGGAACCCAGGCGGCGCCAATGCCTACCAACAGCAGGTGAGAA----------GTGGGTCAAAATACAGGG--------------------GG--------------TGTTTGG----AAAACAGT-----------------------------GTCCAAATA------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------CTTAA--AGAA------------TT-----------------------------------------------TTACATTACT-T--AAAC-TGCAT----------------------TCTAA-----------------------------------------------AGTTTT---------------------------------------------TGTTGTATT----------T------------------------------------AAAGTATT------------------------------------------------------------TAAACACACC--------------TC-----------TATTT----------------------AC--CT---TAA----------------------------TTTAATT------------------------------------------------------------------------------------------------------------TGATT----------TTGATTT-ACCACT-----AATTTT-----C------G-TTTCGTTTCTATTTTGTTC--------------ATT-TGTTTGGTATGATTTCCCCTTGT------CGGAATGG--A-------TGACC--CATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCC
droSec2 scaffold_1:8377506-8377825 + TCATTAGCGGAAAGTGGAACCCAGGCGGCGCCAATGCCTACCAACAGCAGGTAAGAA----------GTGGGTCAAAATACAGGG--------------------GG--------------TGTTTGG----AAAACTGT-----------------------------GTCCAAATA------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------CTT-----------------TTATT-----------------------------------------------TTACATTACT-T--AAAC-TGCAT----------------------TCTTA-----------------------------------------------AGTTTT---------------------------------------------TGTTGTATT----------T------------------------------------AAAGTAAT------------------------------------------------------------TAAAAACACC--------------T------------------------------------------------TTA----------------------------TTTAATT------------------------------------------------------------------------------------------------------------TAATT----------TTGATTT-ACCACT-----AACTTT-----C------G-TTTCGTTTCTATTTTGTTC--------------ATT-TGTTTTGTATGATTTCCCCTTGT------CGGAATGG----------TGACC--AATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCAATACCCAGTACGCC
dm3 chr2R:10864929-10865241 + TAATTAGCGGAAAGTGGAACCCAGGCGGCGCCAATGCCTACCAACAGCAGGTGAGAA----------GTGGGTGAAAATACAAGG--------------------GA--------------T----------------------------------------------------------------------------------TTAGGAAGAAACAACAAGGG-------------------------------------------------------------------------------------------------------------------------TTT----TTT-------------AAATT-----------------------------------------------TTACATTACTGC--AAAC-TTCAA----------------------TCTAA-----------------------------------------------AGCATT---------------------------------------------TGTTGTATT----------T--------------------------------------------------------------------------------------------------------------------------------TT-----------TCT--------------------TTA-GT--CT---TAA----------------------------TTTAATT------------------------------------------------------------------------------------------------------------TGATT----------TTAATTT-ACCACT-----AACTTT-----C------G-TTTCGTTTCTATTTTGTTC--------------ATT-TGTTTTGTATGATTTCCCCTCGT------CGGAATGT----------TGACC--AAACAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCC
droEre2 scaffold_4845:14988377-14988705 - TCATTAGCGGAAAGTGGAACCCAGGCGGCGCCAATGCCTACCAACAGCAGGTGAGAA----------GTGCTTCTATATACAGCAAGGA----------------------------------TTCAC----AATATTG----------------------TTCTAGTGGTCCAAGTT------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------ATAAA--AGGA------------TT-----------------------------------------------TTACATTACT-C--AAGC-TACAC----------------------TCTCA-----------------------------------------------AGTTTT---------------------------------------------TGTTGTGTT---TTCCCTCT------------------------------------AAAATCAT--------------------------------------------------------------AAAACACC--------------TT-----------TCTTT----------------------GC--CT---TAA----------------------------CTTAATT------------------------------------------------------------------------------------------------------------TGATTTTATTTGATTTTGA---------------------------------TT-TG------TATTT-GT----------------ATT-TGTTTTGTATGATTTCCCC-CAT------CGGAATGG----------TGACC--CATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCC
droYak3 2R:10795400-10795729 + TCATTAGCGGAAAGTGGAACCCAGGCGGCGCCAATGCCTACCAACAGCAGGTGAGAA----------GTGCTTCTATATACAGTG--------------------GA--------------A-TGCAA----AATATTG----------------------TTT---------CAGTA------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------ATAAA--AGGA------------TT-----------------------------------------------TGACATTACT-C--AATTTTACAT----------------------TCTTA-----------------------------------------------AGTTCT---------------------------------------------TGTTGTATTCGTTTCT--------------------------------------------------------------------------------------------------------------------------------------------TTCTTTCTTT----------------------GC--CT---TAA----------------------------CTTTATT------------------------------------------------------------------------------------------------------------TGATTTCATTTGATTTTGAGTT-ACCACT-----AACTTG--------------TTTTGTTTCTATTTTGTTC--------------ATT-TGTTTTGTATGATTTCCCCCCAT------CGGAATGG----------TGACC--AATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCC
droEug1 scf7180000409462:286846-287094 - CAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------CTTA-TTAAGA------------TT-----------------------------------------------TTGGTTTAAT-T--AACC-TT--A----------------------TCTAA-----------------------------------------------TATTTT---------------------------------------------TGGTATTT-----CCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTTTATGTAATAAAATACCATAAATTATTGCCATTTAAGTTAATTTGTTT----------TTAATTTCTTCACT-----AATTTGTT-------------TTCGTTTCTGTTTTGCTCT-------------CCT-TGTTTTTTATGATTTCCCT-TAA------CCAAATGA----------TGACCAACTTAAGGAGTACCAA---CGGAAGCCATGGCAATTCAATGTGCCCATACCAAGTACGCC
droBia1 scf7180000302292:1005625-1005840 + ATCCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTATTATAATTTAT-----A-----------------------------------------------TATATT---------------------------------------------TGATATATT----------ATG---------------------------------------------------------------------------------------------------AAATGAACACACT--------------TT-----------AAATTATTTT------------------T--GT---AAA----------------------------CTTAATT------------------------------------------------------------------------------------------------------------TGATT----------TTAATTT-TCCACT-----AATTTGTT-------------TTCGTTTCTGTTTTCCT----------------CT-TGCTTTGATTGATTTCCCC-CAA------CCGAACGG----------TGACC--AATCAGGAGTACACG---CGGAAGCCCTGGCAATTCATTGTGCCCATACCCAGTACGCC
droTak1 scf7180000415260:43832-44322 - TCATTAGCGGAAAGTGGAATCCAGGCGGCGCCAATGCCTACCAACAGCAGGTGAGAA----------AGGGG----------------------------------A--------------TGTTTTT----ATAAT---AAATGGCAGTTGAAAATGTTGTTTTA-TAT--------------------TTACTATAAA----------------------GC----------------CAGTAATCTAAGGATATAATAAATATCTGTATTGTGTATTGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAGTTA--AAA--AG-------TTAATTTATTATTTT----------GGAAAAATGAAAATTTTCTAAGCACCAAAATTCCG---------------------ATTTAAAT--------------------------------------------------A--------------A-------------------------------TCTTTTA-TTTTAA---TGT----------------------------TTTAATATACTTTTAATACCCATAAAAATTATCTGTTAACTTGTTTATCTTATAAAATTACATTACCCTATTTTATGTAACACAATAC----------TTAT-TTTAAATTATTTTCATT----------ATAATTT-TCCACT-----AATTTGTT-------------TTGGTTTCTGTTTTCC----------------CCT-TGTTTTGTGTTGTTTCCCC-TAA------CTGAATGG----------TGATC--AATCAGGAGTATCCT---CGGAAGCCCTGGCAATTCATTGTGCCCATACCCAGTACGCC
droEle1 scf7180000491214:3709350-3709571 + ATAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----TTT-------------CTATT-----------------------------------------------CTAAATT-CAGT--TTGT-ATCAA----------------------TTTAA-----------------------------------------------A------------------------------ACTA----------------------------------------------------------------------------------------------------------------------------------------------------CCCT---GTTTTAATATCTCA-------------------------------TTT-AT--TACAATGCCCTGAATT---------------------------------------------------------------------------------------------------------------------------------------ACGTT----------TTATTTT-TGTACT-----AATTTA-----A------TT-TGTGTTTCTGTTTT-T----------------CCT-CGTTTTGTATGATTTCCCT-TAT------CCGAATGG----------TGACC--AATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCC
droRho1 scf7180000765864:19045-19212 - TATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTCTTTAATT---ACTT-------------------------TT------------------------------------------------------------------------------------------TAAATTTATCTTTTCT----------ATAATTT-TTCACT-----AATTTG-----A------TT-TTTGCTTCTG-----------------------CT-TGATTTGTATGATTTCCCT-TAT------CTGAATGG----------TGACC--AATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCC
droFic1 scf7180000453809:568034-568499 + TCATTAGCGGCAAGTGGAATCCAGGCGGTGCAAATGCGTACCAACAGCAGGTGAGGAAAT-------GTG--------------AAGGATACACACTACACACTCG-----------------TGTGA----AAGACAAG------GTCTTG--AATGTTGTTCTA-TGGCCCAAAGAAATGAAAGAGGGGTTCTGCAAG----------------------GC----------------CAGTAC--------------------------CA-----TGTATTTATATGAGATAAAGTTACATTTACCTTGTATTTAAATGAGATAAAGTCACATGATAAAGT---ATAAA--TGGA------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAT-TTTCTAGTTAAAATA--ATTATATTTTAATC---ATTTGTTACCTT----------ATACAAA-----------------------------------------------------------------------------------------------------------T--------------T-------------------------------T------C-----------------T-------------------------------------------------------------------------------------------TTTTATTGTAACCTAATATCCTAAATTCCTGGT-TTTACCTTGATTTCTTT----------TTAATTT-TCCACT-----AATTTG-----A------TT-TTCGTTTCTGTTT-CT----------------CCT-TGTTTTGTATGATTTCCCC-AAC------C--------------------CA--AATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCC
droKik1 scf7180000302367:264434-264707 - TCATCAGCGGAAAGTGGAATCCTGGAGGTGCCAATGCCTACCAACAGCAGGTGAGAA----------AGGGGTTTA-----------------------------------------------------------------------------------------------------------------------ACTTG----------------------GG----------------T--------------------------TGAGTTA-----------------------------------------------------------------------------------------------------CTTAAAATCCTTTTTTTAAATCTGATA----------------------------------AT-TGAGT----------------------TCTTA-----------------------------------------------AGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACA--------------------------------------------------------------ATTATTTT---TATTATTT------------------------------------------------------------------------------------------------------------------------------------T----------ATAATTT-TCCCTT-----TATTTAAA-------------TTTGTTTCCTTTTTTCCC--------------TTTTATATTTGTATGATTTCCTT-GGT------T--TAT-------------GGAC--AATCAGGAGTACCCG---CGGAAGCCCTGGCAATTCATTGTGCCCATACCCAGTACGCC
droAna3 scaffold_13266:2460046-2460295 - TCATTAGTGGAAAATGGAATCCAGGCGGTGCCAATGCCTATCAGCAGCAGGTAAGAA----------ATAGAT-----------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTTACAGATCTTATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------AT--TTTTA--------T-TTTTTATT-----------------------------------------------------------------------------------------------------------------------------------TA----------TTATTTT-TCCTTT-----AATTTAATTTGG------T-------TTTCCTTTTTCCCT-------------TTT-TTTTTTGTATGATTTCCTT-TGTTTTTTTGTGGATGATGATGACATACC-AT--GACCAGGAGTACCAG---AGGAAGCCATGGCAATTCAATGTGCCCATACCCAGTACGCC
droBip1 scf7180000396759:1515659-1515896 - TCATTAGTGGCAAGTGGAATCCAGGCGGCGCCAATGCCTACCAGCAGCAGGTAAGAA----------CTAGAC-----------------A-----------CTAGA------------------------------------------------------------------------------------------------------------------------TCCTTTTATCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT-------------TT-----------CT--------------------------------------TTAAGTTTTTATTT------------------------------------------------------------------------------------------------------------------------------------T----------ATAATTT-TAACCT-----AATTTG-----G------TT-TTCGTTATTTCCT-G---T-------------CTT-TTTTTTGTATGATTTCCTT-TGT------TTG--TGA---TGACGTACC-AC--CACCAGGAGTACCAG---AGGAAGCCATGGCAATTCAATGTGCCTATACCCAGTACGCC
dp5 3:13350071-13350534 + dps_1196 TCATTAGCGGCAAATGGAATCCAGGCGGTGCCAATGCATACCAACAGCAGGTGAGAG-CCGTACACCGCGGTTGGATATACGGGAGGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTTCCGTCT-------------------------------------------------------------------TATTTA-TTC------------------------------------AAATCAGGGCCTTGGAAAGTTCTTTATTTCAAATT-ATGCTTGAA-----------AAGTTA----------------------------------------------------------------------TTAATTTCCATCGATTTTAATTA--AAA--AG-------TGAGAGATCGTTGTT----------GGCAG------AAGTGTGTAAACACTGCAATCTAGTCAAAGTGTGTACACACTGCCAGTGAAGTACCGCAGGAGAGGCAGAGTTGTCACGTTCTCTTGAGTTTAT-----------T---G------------------------------------------------AT--TGCAAA---TTGAATTATTGTTT------------------------------------------------------------------------------------------------------------------------------------T----------ATAATTT-TAC-CT-----AATTGG-----A------TT-TTCCTTTCTTTTTTG---TGTTTTTTTTT---GTTTGTTTTTGTATGGTTTTGCT-CTT-------GGTAT------------CG-AC--GAGCAGGAGTACCAG---CGGAAGCCGTGGCAATTCAATGTGCCCATACCAAGTACGCC
droPer2 scaffold_2:8271396-8271856 - TCATTAGCGGCAAATGGAATCCAGGCGGTGCCAATGCATACCAACAGCAGGTGAGAG-CCGTAAACCGCGGATGGATATACGGGAGGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGTTCCGTCT-------------------------------------------------------------------TATTTA-TTC------------------------------------AAATCAGGGCCTTGGAAAGTTCT----------TTGCT-T--GAAT-TTCTTCCTAAAGTTA----------------------------------------------------------------------TTAATTTCCATCGATTTTAATTA--AAA--AG-------TGAGAGATTTTTTTT----------GGCAG------AAGTGTGTAAACACTGCATTCTAGTCAAAATGTGTACACACTGCCAGTGAAGTACCGCAGGAGAGGCAGAGTTGTCACGTTCTCTTGAGTTTAT-----------T---G------------------------------------------------AT--TGCAAA---TTGAATTATTGTTT------------------------------------------------------------------------------------------------------------------------------------T----------ATAATTT-TAC-CT-----AATTGG-----A------TT-TTCCTTTCTTTTTTG---TGTTTT-TTTT---GTTTGTTTTTGTATGGTTTTGCT-CTT-------GGTAT------------CG-AC--GATCAGGAGTACCAG---CGGAAGCCGTGGCAATTCAATGTGCCCATACCAAGTACGCC
droWil2 scf2_1100000004512:1458217-1458418 - AACATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT--AGGATATTTAGTTT--------------------------------------------------------------T--AAAC-TATAT----------------------T-----------------------------------------------------------------------------------------------A---CTTTATGATTTT----------ATAAATA-----------------------------------------------------------------------------------------------------------T--------------T-------------------------------TCGTTTA-TTTTTT---GAA----------------------------TTTAATT------------------------------------------------------------------------------------------------------------GACTT----------TTTATTT-ACCATT-----TCTTTT-----C------A-TTTTATCTTCAACCCACTT--------------TTA-TGTT-----CG----------AT------TCAAAAAA----------TA-----CCCAAGGAATACCCA---AGAAAACCGTGGCAATTAAATGTGCCCATTCCGAGTACGCC
droVir3 scaffold_12875:9730064-9730197 + TTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAATTTTTTATGTTATTC------------------------------------------------------------------------------------------------------------T---------------------------------AATTTT-----G------T-------TA-CATTTCTCAC------------------TTCTTTGCATA-TTTATTT-TGTT--------AATGG----------CAAC---CATTAGGAATACCAG---CGCAAGCCTTGGCAATTCAATGTGCCCATACCAAGTACGCC
droMoj3 scaffold_6496:17343708-17343925 - TTATTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----T------------------TT------------------------------------------------------------------------------------------TT-----A-----------------------------------------------TATTTTTTAATTT-TTTCTATTTAAATTA--ACTTTAC----------------------------------------------------------------------------------------------------------------------------------------------------T---GTTTGCATATTTCT---------------TTTTGTAAAATTG------A-----------------T-------------------------------------------------------------------------------------------TTTTAT-----------------------------------------CGTT----------TTGCTTT-CATAATTTTCTAATTTG-----A------TT-TA-ATTTCC------T----------------TTT-CGTTTCATAATAAT---TT-GATT--------AATGG-----ACG--CGCTT--AATTAGGAATACCAG---CGCAAGCCCTGGCAATTCAACGTGCCCATACCCAGTACGCC
droGri2 scaffold_15245:2937940-2938426 + TTATCAGCGGCAAATGGAATCCGGGCGGTGGCAATGCCTATCAGCAGCAGGTAAACG----------ACAC--------------------------------TAGAATTATGACCCGCATAGTATGCCAGATA------GACTCGCAGTCGAAGTTG---TGCTTGTGAC---AGGCACCCAAAGAGGGGCGTTACTTGGAAATAAGAATATGACGTCAAGCGGAATGTTTTCAGCCGCT------------------------------------------------------------------------------------------------------------TGC-TTCAAG------------TTTTGTTTAAACGCTAGTC-------------------------------------------------------------------------TTATATTTGTTTATTGGTTAGAAACAAAATGCGTAGCATTCCGCATTGATTTATGTT------------TATTTATTAA-ACAAATACTTTAC----------------------------------------------------------------------------------------------------------------------------------------------------CTATAATTTGATATTTCTTGTTCGTTTTTTT----------------------AG--TT---TAA----------------------------TTTAATT------------------------------------------------------------------------------------------------------------T---T----------TTGCA---TATAATTTTTTAATTTG-----GCAACTTT--TTCTTTTCTCATTT-T-C-----------TTCGAT-TACAT--AATGAT----TT-GATT--------AATGG--GCGACGC-GCACC--CGCTAGGAATACCAGCAACGCAAGCCGTGGCAATTCAATGTGCCCATACCGAGTACGCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCATTAGCGGAAAGTGGAACCCAGGCGGCGCCAATGCCTACCAACAGCAGGTGAGAA----------GTGGGTCAAAATACAGGG--------------------GG--------------TGTTTGG----AAAACAGT-----------------------------GTCCAAATA------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------CTTAA--AGAA------------TT-----------------------------------------------TTACATTACT-T--AAAC-TGCAT----------------------TCTAA-----------------------------------------------AGTTTT---------------------------------------------TGTTGTATT----------T------------------------------------AAAGTATT------------------------------------------------------------TAAACACACC--------------TC-----------TATTT----------------------AC--CT---TAA----------------------------TTTAATT------------------------------------------------------------------------------------------------------------TGATT----------TTGATTT-ACCACT-----AATTTT-----C------G-TTTCGTTTCTATTTTGTTC--------------ATT-TGTTTGGTATGATTTCCCCTTGT------CGGAATGG--A-------TGACC--CATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCTTGT------CGGAATGG--A-------TGACC--C..........................................................2312.00200200000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CGGAAGCCCTGGCAATT........................2011.00101000000000000000
...TTAGCGGAAAGTGGAACCCAGGCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCCTTGT------CGGAATGG--A-------TGACC--...........................................................2411.00100000010000000000
..ATTAGCGGAAAGTGGAACCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
droSec2
TCATTAGCGGAAAGTGGAACCCAGGCGGCGCCAATGCCTACCAACAGCAGGTAAGAA----------GTGGGTCAAAATACAGGG--------------------GG--------------TGTTTGG----AAAACTGT-----------------------------GTCCAAATA------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------CTT-----------------TTATT-----------------------------------------------TTACATTACT-T--AAAC-TGCAT----------------------TCTTA-----------------------------------------------AGTTTT---------------------------------------------TGTTGTATT----------T------------------------------------AAAGTAAT------------------------------------------------------------TAAAAACACC--------------T------------------------------------------------TTA----------------------------TTTAATT------------------------------------------------------------------------------------------------------------TAATT----------TTGATTT-ACCACT-----AACTTT-----C------G-TTTCGTTTCTATTTTGTTC--------------ATT-TGTTTTGTATGATTTCCCCTTGT------CGGAATGG----------TGACC--AATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCAATACCCAGTACGCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..ATTAGCGGAAAGTGGAACCCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
............................................................................AATACAGGG--------------------GG--------------TGTTTGG----A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACCAG---CGGAAGCCCTGGCAA..........................2311.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAG---CGGAAGCCCTGGC............................1911.0010010
.............GTGGAACCCAGGCGGCGCCAATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
dm3
TAATTAGCGGAAAGTGGAACCCAGGCGGCGCCAATGCCTACCAACAGCAGGTGAGAA----------GTGGGTGAAAATACAAGG--------------------GA--------------T----------------------------------------------------------------------------------TTAGGAAGAAACAACAAGGG-------------------------------------------------------------------------------------------------------------------------TTT----TTT-------------AAATT-----------------------------------------------TTACATTACTGC--AAAC-TTCAA----------------------TCTAA-----------------------------------------------AGCATT---------------------------------------------TGTTGTATT----------T--------------------------------------------------------------------------------------------------------------------------------TT-----------TCT--------------------TTA-GT--CT---TAA----------------------------TTTAATT------------------------------------------------------------------------------------------------------------TGATT----------TTAATTT-ACCACT-----AACTTT-----C------G-TTTCGTTTCTATTTTGTTC--------------ATT-TGTTTTGTATGATTTCCCCTCGT------CGGAATGT----------TGACC--AAACAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTCGT------CGGAATGT----------TGACC--A..........................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTCGT------CGGAATGT----------TGACC--AAACAG.....................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCCTCGT------CGGAATGT----------TGA...............................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000
..ATTAGCGGAAAGTGGAACCCATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------T--------------------------------------------------------------------------------------------------------------------------------TT-----------TCT--------------------TTA-GT--CT---TAA----------------------------TTT............................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCCTCGT------CGGAATGT----------TGACC--...........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCCTCGT------CGGAATGT----------TGACC--...........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCCTCGT------CGGAATGT----------TG................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GAAAGTGGAACCCAGGCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCCTCGT------CGGAATGT----------TGAC..............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...........AAGTGGAACCCAGGCGGCGCCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTCGT------CGGAATGT----------TGACC--AAAC.......................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCCTCGT------CGGAATGT----------TGACC--ATC........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CGGAAGCCCTGGCAATTCAA.....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTATGATTTCCCCTCGT------C...................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATTTTGTTC--------------ATT-TGTTTTGTAT.......................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTCAATGTGCCCATACCCA.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAGTGGAACCCAGGCGGCGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CAGCAGGTGAGAA----------GTGGGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................AGGCGGCGCCAATGCCTACCAACAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTT-ACCACT-----AACTTT-----C------G-TT....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GCCAATGCCTACCAACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATTTCCCCTCGT------CGGAAT..............................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCTCGT------CGGAATGT----------TGACC--A..........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..................ACCCAGGCGGCGCCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
droEre2
TCATTAGCGGAAAGTGGAACCCAGGCGGCGCCAATGCCTACCAACAGCAGGTGAGAA----------GTGCTTCTATATACAGCAAGGA----------------------------------TTCAC----AATATTG----------------------TTCTAGTGGTCCAAGTT------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------ATAAA--AGGA------------TT-----------------------------------------------TTACATTACT-C--AAGC-TACAC----------------------TCTCA-----------------------------------------------AGTTTT---------------------------------------------TGTTGTGTT---TTCCCTCT------------------------------------AAAATCAT--------------------------------------------------------------AAAACACC--------------TT-----------TCTTT----------------------GC--CT---TAA----------------------------CTTAATT------------------------------------------------------------------------------------------------------------TGATTTTATTTGATTTTGA---------------------------------TT-TG------TATTT-GT----------------ATT-TGTTTTGTATGATTTCCCC-CAT------CGGAATGG----------TGACC--CATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..ATTAGCGGAAAGTGGAACCCAGGCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
droYak3
TCATTAGCGGAAAGTGGAACCCAGGCGGCGCCAATGCCTACCAACAGCAGGTGAGAA----------GTGCTTCTATATACAGTG--------------------GA--------------A-TGCAA----AATATTG----------------------TTT---------CAGTA------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------ATAAA--AGGA------------TT-----------------------------------------------TGACATTACT-C--AATTTTACAT----------------------TCTTA-----------------------------------------------AGTTCT---------------------------------------------TGTTGTATTCGTTTCT--------------------------------------------------------------------------------------------------------------------------------------------TTCTTTCTTT----------------------GC--CT---TAA----------------------------CTTTATT------------------------------------------------------------------------------------------------------------TGATTTCATTTGATTTTGAGTT-ACCACT-----AACTTG--------------TTTTGTTTCTATTTTGTTC--------------ATT-TGTTTTGTATGATTTCCCCCCAT------CGGAATGG----------TGACC--AATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................AGGCGGCGCCAATGCCTACCAACAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100001000000
droEug1
CAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------CTTA-TTAAGA------------TT-----------------------------------------------TTGGTTTAAT-T--AACC-TT--A----------------------TCTAA-----------------------------------------------TATTTT---------------------------------------------TGGTATTT-----CCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTTTATGTAATAAAATACCATAAATTATTGCCATTTAAGTTAATTTGTTT----------TTAATTTCTTCACT-----AATTTGTT-------------TTCGTTTCTGTTTTGCTCT-------------CCT-TGTTTTTTATGATTTCCCT-TAA------CCAAATGA----------TGACCAACTTAAGGAGTACCAA---CGGAAGCCATGGCAATTCAATGTGCCCATACCAAGTACGCCSizeHit CountTotal NormTotal
No Reads
droBia1
ATCCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTATTATAATTTAT-----A-----------------------------------------------TATATT---------------------------------------------TGATATATT----------ATG---------------------------------------------------------------------------------------------------AAATGAACACACT--------------TT-----------AAATTATTTT------------------T--GT---AAA----------------------------CTTAATT------------------------------------------------------------------------------------------------------------TGATT----------TTAATTT-TCCACT-----AATTTGTT-------------TTCGTTTCTGTTTTCCT----------------CT-TGCTTTGATTGATTTCCCC-CAA------CCGAACGG----------TGACC--AATCAGGAGTACACG---CGGAAGCCCTGGCAATTCATTGTGCCCATACCCAGTACGCCSizeHit CountTotal NormTotal
No Reads
droTak1
TCATTAGCGGAAAGTGGAATCCAGGCGGCGCCAATGCCTACCAACAGCAGGTGAGAA----------AGGGG----------------------------------A--------------TGTTTTT----ATAAT---AAATGGCAGTTGAAAATGTTGTTTTA-TAT--------------------TTACTATAAA----------------------GC----------------CAGTAATCTAAGGATATAATAAATATCTGTATTGTGTATTGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAGTTA--AAA--AG-------TTAATTTATTATTTT----------GGAAAAATGAAAATTTTCTAAGCACCAAAATTCCG---------------------ATTTAAAT--------------------------------------------------A--------------A-------------------------------TCTTTTA-TTTTAA---TGT----------------------------TTTAATATACTTTTAATACCCATAAAAATTATCTGTTAACTTGTTTATCTTATAAAATTACATTACCCTATTTTATGTAACACAATAC----------TTAT-TTTAAATTATTTTCATT----------ATAATTT-TCCACT-----AATTTGTT-------------TTGGTTTCTGTTTTCC----------------CCT-TGTTTTGTGTTGTTTCCCC-TAA------CTGAATGG----------TGATC--AATCAGGAGTATCCT---CGGAAGCCCTGGCAATTCATTGTGCCCATACCCAGTACGCCSizeHit CountTotal NormTotal
No Reads
droEle1
ATAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----TTT-------------CTATT-----------------------------------------------CTAAATT-CAGT--TTGT-ATCAA----------------------TTTAA-----------------------------------------------A------------------------------ACTA----------------------------------------------------------------------------------------------------------------------------------------------------CCCT---GTTTTAATATCTCA-------------------------------TTT-AT--TACAATGCCCTGAATT---------------------------------------------------------------------------------------------------------------------------------------ACGTT----------TTATTTT-TGTACT-----AATTTA-----A------TT-TGTGTTTCTGTTTT-T----------------CCT-CGTTTTGTATGATTTCCCT-TAT------CCGAATGG----------TGACC--AATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCCSizeHit CountTotal NormTotal
No Reads
droRho1
TATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTCTTTAATT---ACTT-------------------------TT------------------------------------------------------------------------------------------TAAATTTATCTTTTCT----------ATAATTT-TTCACT-----AATTTG-----A------TT-TTTGCTTCTG-----------------------CT-TGATTTGTATGATTTCCCT-TAT------CTGAATGG----------TGACC--AATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCCSizeHit CountTotal NormTotal
No Reads
droFic1
TCATTAGCGGCAAGTGGAATCCAGGCGGTGCAAATGCGTACCAACAGCAGGTGAGGAAAT-------GTG--------------AAGGATACACACTACACACTCG-----------------TGTGA----AAGACAAG------GTCTTG--AATGTTGTTCTA-TGGCCCAAAGAAATGAAAGAGGGGTTCTGCAAG----------------------GC----------------CAGTAC--------------------------CA-----TGTATTTATATGAGATAAAGTTACATTTACCTTGTATTTAAATGAGATAAAGTCACATGATAAAGT---ATAAA--TGGA------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAT-TTTCTAGTTAAAATA--ATTATATTTTAATC---ATTTGTTACCTT----------ATACAAA-----------------------------------------------------------------------------------------------------------T--------------T-------------------------------T------C-----------------T-------------------------------------------------------------------------------------------TTTTATTGTAACCTAATATCCTAAATTCCTGGT-TTTACCTTGATTTCTTT----------TTAATTT-TCCACT-----AATTTG-----A------TT-TTCGTTTCTGTTT-CT----------------CCT-TGTTTTGTATGATTTCCCC-AAC------C--------------------CA--AATCAGGAGTACCAG---CGGAAGCCCTGGCAATTCAATGTGCCCATACCCAGTACGCCSizeHit CountTotal NormTotal
No Reads
droKik1
TCATCAGCGGAAAGTGGAATCCTGGAGGTGCCAATGCCTACCAACAGCAGGTGAGAA----------AGGGGTTTA-----------------------------------------------------------------------------------------------------------------------ACTTG----------------------GG----------------T--------------------------TGAGTTA-----------------------------------------------------------------------------------------------------CTTAAAATCCTTTTTTTAAATCTGATA----------------------------------AT-TGAGT----------------------TCTTA-----------------------------------------------AGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACA--------------------------------------------------------------ATTATTTT---TATTATTT------------------------------------------------------------------------------------------------------------------------------------T----------ATAATTT-TCCCTT-----TATTTAAA-------------TTTGTTTCCTTTTTTCCC--------------TTTTATATTTGTATGATTTCCTT-GGT------T--TAT-------------GGAC--AATCAGGAGTACCCG---CGGAAGCCCTGGCAATTCATTGTGCCCATACCCAGTACGCCSizeHit CountTotal NormTotal
No Reads
droAna3
TCATTAGTGGAAAATGGAATCCAGGCGGTGCCAATGCCTATCAGCAGCAGGTAAGAA----------ATAGAT-----------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTTACAGATCTTATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------AT--TTTTA--------T-TTTTTATT-----------------------------------------------------------------------------------------------------------------------------------TA----------TTATTTT-TCCTTT-----AATTTAATTTGG------T-------TTTCCTTTTTCCCT-------------TTT-TTTTTTGTATGATTTCCTT-TGTTTTTTTGTGGATGATGATGACATACC-AT--GACCAGGAGTACCAG---AGGAAGCCATGGCAATTCAATGTGCCCATACCCAGTACGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGTACCAG---AGGAAGCCATGGCAA..........................2611.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGTACCAG---AGGAAGCCA................................2011.001000001
droBip1
TCATTAGTGGCAAGTGGAATCCAGGCGGCGCCAATGCCTACCAGCAGCAGGTAAGAA----------CTAGAC-----------------A-----------CTAGA------------------------------------------------------------------------------------------------------------------------TCCTTTTATCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT-------------TT-----------CT--------------------------------------TTAAGTTTTTATTT------------------------------------------------------------------------------------------------------------------------------------T----------ATAATTT-TAACCT-----AATTTG-----G------TT-TTCGTTATTTCCT-G---T-------------CTT-TTTTTTGTATGATTTCCTT-TGT------TTG--TGA---TGACGTACC-AC--CACCAGGAGTACCAG---AGGAAGCCATGGCAATTCAATGTGCCTATACCCAGTACGCCSizeHit CountTotal NormTotal
No Reads
dp5
TCATTAGCGGCAAATGGAATCCAGGCGGTGCCAATGCATACCAACAGCAGGTGAGAG-CCGTACACCGCGGTTGGATATACGGGAGGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTTCCGTCT-------------------------------------------------------------------TATTTA-TTC------------------------------------AAATCAGGGCCTTGGAAAGTTCTTTATTTCAAATT-ATGCTTGAA-----------AAGTTA----------------------------------------------------------------------TTAATTTCCATCGATTTTAATTA--AAA--AG-------TGAGAGATCGTTGTT----------GGCAG------AAGTGTGTAAACACTGCAATCTAGTCAAAGTGTGTACACACTGCCAGTGAAGTACCGCAGGAGAGGCAGAGTTGTCACGTTCTCTTGAGTTTAT-----------T---G------------------------------------------------AT--TGCAAA---TTGAATTATTGTTT------------------------------------------------------------------------------------------------------------------------------------T----------ATAATTT-TAC-CT-----AATTGG-----A------TT-TTCCTTTCTTTTTTG---TGTTTTTTTTT---GTTTGTTTTTGTATGGTTTTGCT-CTT-------GGTAT------------CG-AC--GAGCAGGAGTACCAG---CGGAAGCCGTGGCAATTCAATGTGCCCATACCAAGTACGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATCGTTGTT----------GGCAG------AAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000030
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAG---CGGAAGCCGTGGC............................1912.0020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------GGTAT------------CG-AC--GAGCAGGAG..................................................2012.0020000000020
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCT-CTT-------GGTAT------------CG-AC--GAGCA......................................................2211.0010100000000
...............GGAATCCAGGCGGTGCCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGAGTACCAG---CGGAAGCCGTGGC............................2711.0010000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAG---CGGAAGCCGTGGCAA..........................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACCAG---CGGAAGCCGTGGCAATT........................2511.0010100000000
..ATTAGCGGCAAATGGAATCCAGGCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000001
droPer2
TCATTAGCGGCAAATGGAATCCAGGCGGTGCCAATGCATACCAACAGCAGGTGAGAG-CCGTAAACCGCGGATGGATATACGGGAGGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGTTCCGTCT-------------------------------------------------------------------TATTTA-TTC------------------------------------AAATCAGGGCCTTGGAAAGTTCT----------TTGCT-T--GAAT-TTCTTCCTAAAGTTA----------------------------------------------------------------------TTAATTTCCATCGATTTTAATTA--AAA--AG-------TGAGAGATTTTTTTT----------GGCAG------AAGTGTGTAAACACTGCATTCTAGTCAAAATGTGTACACACTGCCAGTGAAGTACCGCAGGAGAGGCAGAGTTGTCACGTTCTCTTGAGTTTAT-----------T---G------------------------------------------------AT--TGCAAA---TTGAATTATTGTTT------------------------------------------------------------------------------------------------------------------------------------T----------ATAATTT-TAC-CT-----AATTGG-----A------TT-TTCCTTTCTTTTTTG---TGTTTT-TTTT---GTTTGTTTTTGTATGGTTTTGCT-CTT-------GGTAT------------CG-AC--GATCAGGAGTACCAG---CGGAAGCCGTGGCAATTCAATGTGCCCATACCAAGTACGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................ATCCAGGCGGTGCCAATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droWil2
AACATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT--AGGATATTTAGTTT--------------------------------------------------------------T--AAAC-TATAT----------------------T-----------------------------------------------------------------------------------------------A---CTTTATGATTTT----------ATAAATA-----------------------------------------------------------------------------------------------------------T--------------T-------------------------------TCGTTTA-TTTTTT---GAA----------------------------TTTAATT------------------------------------------------------------------------------------------------------------GACTT----------TTTATTT-ACCATT-----TCTTTT-----C------A-TTTTATCTTCAACCCACTT--------------TTA-TGTT-----CG----------AT------TCAAAAAA----------TA-----CCCAAGGAATACCCA---AGAAAACCGTGGCAATTAAATGTGCCCATTCCGAGTACGCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACCGTGGCAATTAAATGT..................2111.00100001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCCCATTCCGAG......1811.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACCCA---AGAAAACCGTGGC............................2211.00100010
droVir3
TTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAATTTTTTATGTTATTC------------------------------------------------------------------------------------------------------------T---------------------------------AATTTT-----G------T-------TA-CATTTCTCAC------------------TTCTTTGCATA-TTTATTT-TGTT--------AATGG----------CAAC---CATTAGGAATACCAG---CGCAAGCCTTGGCAATTCAATGTGCCCATACCAAGTACGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CGCAAGCCTTGGCAATT........................2012.002000000000000000000000000000000000200000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATGTGCCCATACCAAGTACGCC2512.002001000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAG---CGCAAGCCTTGGCAATT........................2411.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TTATTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----T------------------TT------------------------------------------------------------------------------------------TT-----A-----------------------------------------------TATTTTTTAATTT-TTTCTATTTAAATTA--ACTTTAC----------------------------------------------------------------------------------------------------------------------------------------------------T---GTTTGCATATTTCT---------------TTTTGTAAAATTG------A-----------------T-------------------------------------------------------------------------------------------TTTTAT-----------------------------------------CGTT----------TTGCTTT-CATAATTTTCTAATTTG-----A------TT-TA-ATTTCC------T----------------TTT-CGTTTCATAATAAT---TT-GATT--------AATGG-----ACG--CGCTT--AATTAGGAATACCAG---CGCAAGCCCTGGCAATTCAACGTGCCCATACCCAGTACGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAAT---TT-GATT--------AATGG-----ACG--CG................................................................2411.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------AATGG-----ACG--CGCTT--AATTAG.....................................................2011.001001000
droGri2
TTATCAGCGGCAAATGGAATCCGGGCGGTGGCAATGCCTATCAGCAGCAGGTAAACG----------ACAC--------------------------------TAGAATTATGACCCGCATAGTATGCCAGATA------GACTCGCAGTCGAAGTTG---TGCTTGTGAC---AGGCACCCAAAGAGGGGCGTTACTTGGAAATAAGAATATGACGTCAAGCGGAATGTTTTCAGCCGCT------------------------------------------------------------------------------------------------------------TGC-TTCAAG------------TTTTGTTTAAACGCTAGTC-------------------------------------------------------------------------TTATATTTGTTTATTGGTTAGAAACAAAATGCGTAGCATTCCGCATTGATTTATGTT------------TATTTATTAA-ACAAATACTTTAC----------------------------------------------------------------------------------------------------------------------------------------------------CTATAATTTGATATTTCTTGTTCGTTTTTTT----------------------AG--TT---TAA----------------------------TTTAATT------------------------------------------------------------------------------------------------------------T---T----------TTGCA---TATAATTTTTTAATTTG-----GCAACTTT--TTCTTTTCTCATTT-T-C-----------TTCGAT-TACAT--AATGAT----TT-GATT--------AATGG--GCGACGC-GCACC--CGCTAGGAATACCAGCAACGCAAGCCGTGGCAATTCAATGTGCCCATACCGAGTACGCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:01 PM