ID:

dsi_17988

 Coordinate:

3l:22346438-22346587 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.5 -5.5 -5.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAGCGTTTCAATGAGAAACTCAAGGAACTAATGGATCAAACCAAGAACAAGTAACAGCCTTGGTAGTTTTGTACAAGGATAACGTTACCTTCGCTAAATTCAAAGTCATAGAGAGACCTTTGTTATTAAAATTGTAAAAATTTTATAAGCCCAAATTTGTCAACTAAACCTGGTTTTTTTTGCGATATCTTATATTGAGCTTTCCACGCGCTTGTTTTACAAATTCTGAAAATAGGACGAAGTGCTGAAA
*************************************************************************************.........................((.(((.....(((..(((((((.....)))))))..))).....))).))....************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 O002
Head
 M023
head
...................................TCAAACCAAGAACAAGTAACAGCCT.............................................................................................................................................................................................. 25 0 1 8.00 8 5 1 2 0 0 0 0 0 0 0 0
...................................TCAAACCAAGAACAAGTAACAGCCTT............................................................................................................................................................................................. 26 0 1 6.00 6 0 2 2 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................GCTTGTTTTACAAATTCTGAA.................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
.....................AAGGAACTAATGGATCAAACCAAGAAC.......................................................................................................................................................................................................... 27 0 1 3.00 3 0 2 0 0 0 0 1 0 0 0 0
.....................................................................................TACCTTCGCTAAATTCAAAGTCATAGAGA........................................................................................................................................ 29 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
......TTCAATGAGAAACTCAAGGAACTAATG......................................................................................................................................................................................................................... 27 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
............................................................................................................TAGAGAGACCTTTGTTATTAAAAT...................................................................................................................... 24 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0
................AACTCAAGGAACTAATGGATCAAACCA............................................................................................................................................................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.......TCAATGAGAAACTCAAGGAACT............................................................................................................................................................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TTTATAAGCCCAAATTTGTCAACT..................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATTCTGAAAATAGGACGAAGTGC..... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ACAAATTCTGAAAATAGGACGAAGTGC..... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................ATTAAAATTGTAAAAA.............................................................................................................. 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................ACTCAAGGAACTAATGGATCAAACCA............................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTTACAAATTCTGAAAATAGGACGAAGTGC..... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............GAGAAACTCAAGGAACTAATG......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AGCTTTCCACGCGCTTGTT.................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............GAAACTCAAGGAACTAATGGATCAAACC................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......TCAACGAGAAACTCAAGGAACTAATGG........................................................................................................................................................................................................................ 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....GTTTCAATGAGAAACTCAAGGAACTAATG......................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GCTTGTTTTACAAATTCTGAAAA.................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................TCAAACCAAGAACAAGTAACAGCCTTGG........................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTTGTCAACTAAACCTGGT............................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................TAACGTTACCTTCGCTAAA........................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................TTTTTTTGAGATATCGTATAT....................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......TCAATGAGAAACTCAAGGAACC............................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........ATGAGAAACTCAAGGAACTAATGGATC..................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......TTCAATGAGAAACTCAAGGAA............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................CACTAAATTCAAAGTCATAGAGAGA...................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................TTGTAGTTTTGTACAAGGATAACGTT.................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................CTTGGTAGTTTTGTACAAGGA........................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................TTCGCTAAATTCAAAGTCATAGAGA........................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TGTTATTAAAATTGTAAAAA.............................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................TACCTTCACTAAATTCAAAGTCATAGAGA........................................................................................................................................ 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........ATGAGAAACTCAAGGAACTAAC.......................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................CGTTACCTTCGCTAAATTCAAAGTC............................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........AATGAGAAACTCAAGGAACTAATG......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGTTTTACAAATTCTGAAAATA................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ATAAGCCCAAATTTGTCAACTA.................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CAAATTCTGAAAATAGGACGAAGTGC..... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................AACTCAAGGAACTAATGGATCAAACC................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................GGATCAAACCAAGAACAA........................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................CGCTTGTTTTACAAATTCTGAAAATA................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....GTTTCAATGAGAAACTCAAGGA................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TACAAATTCTGAAAATAGGACGAAGTGC..... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TGCGATATCTTATATTGAGC.................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.......TCAATGAGAAACTCAAGGAACG............................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............GAAACTCAAGGAACTAATGGATCAAAC................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................TAGAGAGACCTTTGTTATTAAAATTG.................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................TTGGTAGTTTTGTACAAGGATAACGT..................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................TAAATTCAAAGTCATAGAGAGA...................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......TTCAAGGAGAAACGCAAGGCA............................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................TAAAAATTTTATAAG..................................................................................................... 15 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................ATTAAAATTGTAAAAAA............................................................................................................. 17 1 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
.........................................CCAGAACAATTAACAGCC............................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................ATTAAAATTGTAAAA............................................................................................................... 15 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATCTTAGATCGAGCTTTGC............................................. 19 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AAAATAGGACGAAGAACT.... 18 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................AATAGAACGGAGTGCTGTA. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCTGAAAGTTGGACGAAGA....... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................TGTTTTTGCGATATC............................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GTCGCAAAGTTACTCTTTGAGTTCCTTGATTACCTAGTTTGGTTCTTGTTCATTGTCGGAACCATCAAAACATGTTCCTATTGCAATGGAAGCGATTTAAGTTTCAGTATCTCTCTGGAAACAATAATTTTAACATTTTTAAAATATTCGGGTTTAAACAGTTGATTTGGACCAAAAAAAACGCTATAGAATATAACTCGAAAGGTGCGCGAACAAAATGTTTAAGACTTTTATCCTGCTTCACGACTTT
*************************************************************************************.........................((.(((.....(((..(((((((.....)))))))..))).....))).))....************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
................................................................................TTGCAATGGAAGCGATTTAAG..................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................................................AGGTGCGCGAACAAAATGTTTAAGACTT.................... 28 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................AGTTGATTTGGACCAAAAAAA...................................................................... 21 0 1 1.00 1 1 0 0 0 0
....................................................................AACATGTTCCTATTGCAAT................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0
..........................................................................................AGTGATTTAAGTTTCAGTATCTCT........................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0
............................................................................................................................................AAAATATTCGGGTTTAAA............................................................................................ 18 0 1 1.00 1 0 0 1 0 0
.........TTGCTCTTTGAGTTCCTTGAT............................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
..................................................................................................................................................TTCGGGTTTAAACAGTTGATT................................................................................... 21 0 1 1.00 1 0 1 0 0 0
............................................................................................................................................................................AAAAAAAAACGCTATAGACAATA....................................................... 23 3 4 0.25 1 0 1 0 0 0
...............................................................................................................................................................................AAAAAAGGCTATAGAAT.......................................................... 17 1 4 0.25 1 0 0 0 1 0
.............................................................................................................................................................................AAAAAAGACGCTGTAGCATAT........................................................ 21 3 7 0.14 1 0 0 0 0 1
......................................................................................................................................................................................GATATAGAATGTCACTCGA................................................. 19 3 20 0.10 2 0 0 0 2 0
...............................................................................................................................................................................AAAAAACGCTGTAGCATA......................................................... 18 2 12 0.08 1 0 0 0 0 1
............................................................................................................................................................................AAAAAAAAACGCTATAGACAAT........................................................ 22 3 13 0.08 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:22346388-22346637 + dsi_17988 CAGCGTTTCAATGAGAAACTCAAGGAACTAATGGATCAAACCAAGAACAAGTAACAGCC--TTGGTAGTTTTGTACAAGGATA-----ACGTTACCTTCGCTAAATTCAAAG---TC-ATAGAGAGACC-TTTGTTATTA---AAATTGTAAAAATTTT-ATAAGCCCAA------------------------------------------------------------------------------------ATTTGTCAACTAAACCTGGTT-TTTTTTGCGATATCTTAT--------------ATTGAGCTTTC-CACGCGCTTGTTTTACAA----------------------------------ATTCT-GAAAATAGGACGA--AGTGCTG-----AAA
droSec2 scaffold_11:2760870-2761119 + CAGCGCTTCAACGAGAAACTCAAAGAACTAATGGATCAAACCAAGAACAAGTAACAGCC--TTGGTAGTTTTGTACAAGGATA-----ACGTTACCTTCACTAAATTCAAAG---TC-ATAGAGAGACC-TTTGTTATTA---AAATTGTAAAAATTTT-ATAAGCCCAA------------------------------------------------------------------------------------ATTTGTCAACTAAACCTGGTT-TTTTTTGCGATATCTTAT--------------ATTGAGCTTTC-CACGCACTTGTTTTACAA----------------------------------ATTCT-GAAAATAGGACGA--AGTGCTG-----AAA
dm3 chr3L:22860205-22860342 + AAATGCCT---------------------------------------------------------------------------------------------------------------------------TTGTAATTA---AAATTGTAAAAATTTT-ATAAGT-CGA------------------------------------------------------------------------------------ACTTGTCAACTAAACCTGGAT-TTTTTTTCGATATCTTAT--------------ATTAAGCTTTC-CACGCGCTTGTTTTACAA----------------------------------ATTCT-GAAAATAGGACAA--AGTGCTG-----AAA
droEre2 scaffold_4784:22501725-22501947 + CAGCGTTTCAACGAGAAACTCAAGGAACTAGTGGATCAAACCAAGAACAAGTAACAGCC--TTGGTAGTTTTGTGCAAGGATT-----ACGTTACCGTCACTAAATTCAAATAAGTC-ATAGAGAGACC-TTTGTAACTT---AAATTGTATAAAAATC-TGAAGCTAAA------------------------------------------------------------------------------------TCTTGTCATCTTAACCTGAAA-TTTTTTGCGC------------------------------------------------AAAA----------------------------------ATTAT-GAAAAAAAGCG----GGTGCAGTTGTCATC
droYak3 3L:23333809-23334039 + CAGCGTTTCAACGAGAAACTCAAGGAACTAGTGGATCAAACCAAGAACAAGTAAAAGCA---TGGTAGTTTTGTACAAGGATA-----ACGTTGCCGTCACTAAATTCAAATT--TC-ATAGACA-AACCTTTGTAACAT---AAATTGTATAAAACTT-ATG--------------------------------------------------------------------------------------------------ATTTTAACTTGG---TTTTTTGCGATATCTGAT--------------ATAGAGCTTTCCCAAGCACTTGTTTCACAA----------------------------------ATGAT--AAAATAGG---A--AGTGCTA-----AAA
droEug1 scf7180000409801:442425-442693 + CAGCGTCTCAACGAGAAAGTAAAGGAACTGGTGGACCAAAGCAAGAACAAGTAAAATCA--TGTGTACATTTGTTCATTGCGA-----------GCGTTACTAAATTGAAATAAATCTTTTGAGCGGTCTTCTATAATTGACAAAAACGTATTAACTAA-GTATTCCTATGATTCCTAAGAAATCTTTAATATCTTTAATGTACCTTAATTAGGAATTTGAATAGCTGTTTTAGAACTTGTTCATTATAAA--------------------------GCTTCGG-------------------------------------------------------------------------------------------CT-TATAAAAAGTCAA--CCAGCTA-----GAG
droBia1 scf7180000302377:346701-346956 - CAGCGTCTCAACGAAAAAGTGAAGGAACTGGTGGACCAAAGCAAGAACAAGTAACAGGC--TTGGTAGTTTTGTATATGGGGA-----ACGTAGCCGTCACTAAATTCAAATAAATC---TGAGCGAGCTTTTGTAATTT---AAATTGTATAAAAGTT-ATCGC--------------------------------------------------------------------------------TATCTGAATCTGAGTCAATTAAATCTGCAA-GTTTTTGGCAAAACTGAT----------------TGAGGTTCT-TCAGAGACAGTTATTAAA----------------------------------GCTATCGGAATTACGCG-AGTCATGATG-----GCA
droTak1 scf7180000415879:85715-85928 - CAGCGTCTCAACGAAAAAGTGAAGGAACTGGTGGACCAAAGCAAGAACAAGTAACACCC--TTGGTAGTTTTGTATATGGAAA-----GCGTAACCGTCACTAAATTCAAATAAATCTCTAGGGCGACCTTTTGTAATTT---AAATTGTATAAAAGTTGATCAA--------------------------------------------------------------------------------TATCTAATACTCAGTCAGCACAATCTGGCA-TTTTGTGGCTAATCTGAT--------------TTCGAGGTTTC-----------------------------------------------------------------------------------------
droEle1 scf7180000490635:9697-9982 + CAGCGTCTCAACGAAAAAGTGAAGGAACTCGTGGACCAAAGCAAGAACAAGTAATGGCC--TTGGTAGTTTTGTACATGGGAACCCCAACCTAACCGTCACTAAATTTGAATATATCCGTTGATCGCCCTTTTGTAAATC---TGTTTGTATAAAAGTTCATCA-C-----------------------------------------------------------------------------------------CAAATCAATTTAACCTGTAATTTTTTTGCGTTTTATTGTAGATGCATTATTGCACTAAGAATTC-CAAACGC-------AGAAATTGAAACTTACTTTTCCCAAAGGGACAAATCTCATTTT---TA-----------AATGGAC-----AAC
droRho1 scf7180000779806:33675-33867 - CAGCGTCTCAACGAAAAAGTGAAGGAGCTAGTGGACCAAAGCAAGAACAAGTAACGGCC--TTGGTAGTTTTGCACATGGGAA-----TCCTAACCGTCACTAAATTTAATAAAATCTCTTGACCGACATTTTGTAATCC---TAACTGTATAAAAGTT---CAG--------------------------------------------------------------------------------CATGTAAAACTCAGTCAGTTTAGACTCGCC-TTTTTTGTCAT-------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453830:155763-155996 - CAGCGTCTGAACGAAAAAGTGAAGGAGCTGGTTGACCAAAGCAAGAACAAGTAACAGCC--TTGGTAGTTTTATACTTGGAAA-----ACCTAACCGTCACTAAATTCTAATGAACTTTTTGAGCGTCTTTTTGTAATTT---CATTTGTAAAAATCG----------------------------------------------------------------------------------------------------CTCAATTAAATC-GCTC-TTTTTTGGCTTATATAAA--A-----------TTTGTG----------------------------------------GCCATGAGGAAAAGTTTTATTAT-AAAAAGAAG---C--TGTGCCG---TCTCG
droKik1 scf7180000302695:162701-162805 - GAGCGAATGAACGAGAAAGTGAAGGAGCTGATGGACAAAACCAAGCAAAAGTAATTGGCATTTGGTAGTTTTTTACATGGGAA-----GC---AGCGTCACTAAATTCAAAA---T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:22591866-22592031 + CAGCGACTGAACGAGAAAGTGAAGGAACTGATGGAGGAAAGCAAGAAAAAGTAATGGCC--TTTGTAGTTTGATA---GGAT------ATCTACACGGCTTTAAATTTAAATAAATCATTTGAGCGAATTTTAGGAATAC---CAATTGAGCAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT----AAAAAATT---G--TCTACCA-----AAC
droBip1 scf7180000396426:231771-231869 - CAGCGACTGAACGAGAAAGTAAAGGAACTGATGGAGGACAGCAAGAAAAAGTAATGGCC--TTTGTAGTTT---ACTAGGATA-----TCCACAC-GGCTTTAAATTCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:3038686-3038739 + CAGCGAATGAACGACAAGATACGAGAGCTAATTGACGACACAAAGAAGAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_9:1333080-1333133 + CAGCGAATGAACGACAAAATACGAGAGCTAATTGACAACACCAAGAAGAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004768:908852-908909 - GAGCGTCTAAATCAGAAGCTGCGCGAATTGGTTGATGATAACAAGAAAAAGTAATTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:14355271-14355325 - GAAAAAATGAATAAAAAAATCCGAGAGCTTATCGATGGAAAAA------AGTAACGTCA--TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:12936994-12937028 + GAAAAAATGAACAAAAAAATCCGCGAACTCATCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:15865980-15866031 + GAGCGACTGAACGAAAAGATTAGCGAGCTAATCGACGGAA---AGAAAAAGTAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAGCGTTTCAATGAGAAACTCAAGGAACTAATGGATCAAACCAAGAACAAGTAACAGCC--TTGGTAGTTTTGTACAAGGATA-----ACGTTACCTTCGCTAAATTCAAAG---TC-ATAGAGAGACC-TTTGTTATTA---AAATTGTAAAAATTTT-ATAAGCCCAA------------------------------------------------------------------------------------ATTTGTCAACTAAACCTGGTT-TTTTTTGCGATATCTTAT--------------ATTGAGCTTTC-CACGCGCTTGTTTTACAA----------------------------------ATTCT-GAAAATAGGACGA--AGTGCTG-----AAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................TCAAACCAAGAACAAGTAACAGCC--T..........................................................................................................................................................................................................................................................................................................................................................2518.00800500012000000000
...................................TCAAACCAAGAACAAGTAACAGCC--TT.........................................................................................................................................................................................................................................................................................................................................................2616.00600010022100000000
.....................................................................................................................................................................................................................................................................................................................................GCTTGTTTTACAA----------------------------------ATTCT-GAA...........................2114.00400400000000000000
.....................AAGGAACTAATGGATCAAACCAAGAAC........................................................................................................................................................................................................................................................................................................................................................................2713.00300000020010000000
............................................................................................TACCTTCGCTAAATTCAAAG---TC-ATAGAGA...........................................................................................................................................................................................................................................................................................2913.00300000030000000000
......TTCAATGAGAAACTCAAGGAACTAATG.......................................................................................................................................................................................................................................................................................................................................................................................2712.00200020000000000000
.......................................................................................................................TAGAGAGACC-TTTGTTATTA---AAAT.....................................................................................................................................................................................................................................................................2412.00200000010100000000
................AACTCAAGGAACTAATGGATCAAACCA.............................................................................................................................................................................................................................................................................................................................................................................2712.00200000002000000000
.......TCAATGAGAAACTCAAGGAACT...........................................................................................................................................................................................................................................................................................................................................................................................2212.00200200000000000000
............................................................................................................................................................TTT-ATAAGCCCAA------------------------------------------------------------------------------------ATTTGTCAACT...............................................................................................................................................2412.00200200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................ATTCT-GAAAATAGGACGA--AGTGC..........2312.00200200000000000000
..............................................................................................................................................................................................................................................................................................................................................ACAA----------------------------------ATTCT-GAAAATAGGACGA--AGTGC..........2711.00100000010000000000
........................................................................................................................................ATTA---AAATTGTAAAAA.............................................................................................................................................................................................................................................................1611.00100000010000000000
.................ACTCAAGGAACTAATGGATCAAACCA.............................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................TTTACAA----------------------------------ATTCT-GAAAATAGGACGA--AGTGC..........3011.00100000010000000000
............GAGAAACTCAAGGAACTAATG.......................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
........................................................................................................................................................................................................................................................................................................................AGCTTTC-CACGCGCTTGTT............................................................................1911.00100001000000000000
..............GAAACTCAAGGAACTAATGGATCAAACC..............................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
....GTTTCAATGAGAAACTCAAGGAACTAATG.......................................................................................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................GCTTGTTTTACAA----------------------------------ATTCT-GAAAA.........................2311.00100000000100000000
...................................TCAAACCAAGAACAAGTAACAGCC--TTGG.......................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
...............................................................................................................................................................................................................................................................TTTGTCAACTAAACCTGGT......................................................................................................................................1911.00101000000000000000
.................................................................................TA-----ACGTTACCTTCGCTAAA...............................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.......TCAATGAGAAACTCAAGGAACC...........................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..........ATGAGAAACTCAAGGAACTAATGGATC...................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
......TTCAATGAGAAACTCAAGGAA.............................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..........................................................C--TTGGTAGTTTTGTACAAGGA.......................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
................................................................................................TTCGCTAAATTCAAAG---TC-ATAGAGA...........................................................................................................................................................................................................................................................................................2511.00100000010000000000
....................................................................................................................................TGTTATTA---AAATTGTAAAAA.............................................................................................................................................................................................................................................................2011.00100000000010000000
..........ATGAGAAACTCAAGGAACTAAC........................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.........................................................................................CGTTACCTTCGCTAAATTCAAAG---TC-..................................................................................................................................................................................................................................................................................................2511.00100001000000000000
.........AATGAGAAACTCAAGGAACTAATG.......................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................TGTTTTACAA----------------------------------ATTCT-GAAAATA.......................2211.00100100000000000000
................................................................................................................................................................ATAAGCCCAA------------------------------------------------------------------------------------ATTTGTCAACTA..............................................................................................................................................2211.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................CAA----------------------------------ATTCT-GAAAATAGGACGA--AGTGC..........2611.00100000010000000000
................AACTCAAGGAACTAATGGATCAAACC..............................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
................................GGATCAAACCAAGAACAA......................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................CGCTTGTTTTACAA----------------------------------ATTCT-GAAAATA.......................2611.00100000010000000000
....GTTTCAATGAGAAACTCAAGGA..............................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................TACAA----------------------------------ATTCT-GAAAATAGGACGA--AGTGC..........2811.00100000010000000000
.........................................................................................................................................................................................................................................................................................TGCGATATCTTAT--------------ATTGAGC.............................................................................................2011.00100000000001000000
.......TCAATGAGAAACTCAAGGAACG...........................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..............GAAACTCAAGGAACTAATGGATCAAAC...............................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
.......................................................................................................................TAGAGAGACC-TTTGTTATTA---AAATTG...................................................................................................................................................................................................................................................................2611.00100000000100000000
.............................................................TTGGTAGTTTTGTACAAGGATA-----ACGT............................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
.....................................................................................................TAAATTCAAAG---TC-ATAGAGAGA.........................................................................................................................................................................................................................................................................................2211.00100000001000000000
.....................................................................................................................................................TAAAAATTTT-ATAAG...................................................................................................................................................................................................................................................1550.20100000000100000000
........................................................................................................................................ATTA---AAATTGTAAAAAA............................................................................................................................................................................................................................................................17200.15300000030000000000
........................................................................................................................................ATTA---AAATTGTAAAA..............................................................................................................................................................................................................................................................15110.09100000001000000000
droSec2
CAGCGCTTCAACGAGAAACTCAAAGAACTAATGGATCAAACCAAGAACAAGTAACAGCC--TTGGTAGTTTTGTACAAGGATA-----ACGTTACCTTCACTAAATTCAAAG---TC-ATAGAGAGACC-TTTGTTATTA---AAATTGTAAAAATTTT-ATAAGCCCAA------------------------------------------------------------------------------------ATTTGTCAACTAAACCTGGTT-TTTTTTGCGATATCTTAT--------------ATTGAGCTTTC-CACGCACTTGTTTTACAA----------------------------------ATTCT-GAAAATAGGACGA--AGTGCTG-----AAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........CAACGAGAAACTCAAAGAACTAATGC......................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
...CGCTTCAACGAGAAACTCAAAGAACT...........................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
....GCTTCAACGAGAAACTCAAAGA..............................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
................................................................................................TTCACTAAATTCAAAG---TC-..................................................................................................................................................................................................................................................................................................1811.0010010
......TTCAACGAGAAACTCAAAGAACTA..........................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
..........................................................................................................................................................................................................................................................................AACCTGGTT-TTTTTTGCG...........................................................................................................................1811.0010010
.............................................................................................................................................................................................................................................................................................................................................TACAA----------------------------------ATTCT-GAAAATAGGACGA--AGT............2611.0010010
........CAACGAGAAACTCAAAGAACT...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
........................................................................................................ATTCAAAG---TC-ATAGAGAGACC-......................................................................................................................................................................................................................................................................................2111.0010010
dm3
AAATGCCT---------------------------------------------------------------------------------------------------------------------------TTGTAATTA---AAATTGTAAAAATTTT-ATAAGT-CGA------------------------------------------------------------------------------------ACTTGTCAACTAAACCTGGAT-TTTTTTTCGATATCTTAT--------------ATTAAGCTTTC-CACGCGCTTGTTTTACAA----------------------------------ATTCT-GAAAATAGGACAA--AGTGCTG-----AAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................AT--------------ATTAAGCTTTC-CACGCGCT................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000200000
........................................................................................................................................................................................................................................................................................TTTCGATATCTTAT--------------ATTAAGC.............................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TTTC-CACGCGCTTGTTTTACA.......................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................C-CACGCGCTTGTTTTACAA----------------------------------ATT.................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CT-GAAAATAGGACAA--AGTGCTA-----...2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGGACAA--AGTGCTG-----A..2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TACAA----------------------------------ATTCT-GAAAATAGGACAA--AGT............2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TTAAGCTTTC-CACGCGCTTGT.............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TTC-CACGCGCTTGTTTTACAA----------------------------------A...................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................CTGGAT-TTTTTTTCGATAT.......................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................AAACCTGGAT-TTTTTTTCGAT.........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTCT-GAAAATAGGACAA--AGTGCTG-----A..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................TTAT--------------ATTAAGCTTTC-CACGCGCT................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................CGATATCTTAT--------------ATTAAGCTTT..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................T--------------ATTAAGCTTTC-CACGCGCTT...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TTTACAA----------------------------------ATTCT-GAAAATAGGACAA--AG.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TC-CACGCGCTTGTTTTACA.......................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................T-CGA------------------------------------------------------------------------------------ACTTGTCAACTAAACC..........................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................T-ATAAGT-CGA------------------------------------------------------------------------------------ACTTGTCAACT...............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TCAACTAAACCTGGAT-TTTTT...............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................ACGCGCTTGTTTTACAA----------------------------------ATTCT-GAA...........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TT-ATAAGT-CGA------------------------------------------------------------------------------------ACTTGTCAAC................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................AAATTTT-ATAAGT-CGA------------------------------------------------------------------------------------ACTTG.....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTCT-GAAAATAGGACAA--AGTGCT.........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CGCGCTTGTTTTACAA----------------------------------ATTCT-GAAAA.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTGTTTTACAA----------------------------------ATTCT-GAAATA........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TC-CACGCGCTTGTTTTACAA----------------------------------ATTCT-GA............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................GTAATTA---AAATTGTAAAAATT...........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................ATTTT-ATAAGT-CGA------------------------------------------------------------------------------------ACTTGTC...................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GATATCTTAT--------------ATTAAGCTTT..........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TACAA----------------------------------ATTCT-GAAAATAGGACAA--AGTGC..........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................T-ATAAGT-CGA------------------------------------------------------------------------------------ACTTGTCAACTAAAAAA.........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TTTACAA----------------------------------ATTCT-GAAAATAGG.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AAGCTTTC-CACGCGCTTG..............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GATATCTTAT--------------ATTAAGCTT...........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................T-ATAAGT-CGA------------------------------------------------------------------------------------ACTTGTCAACTAAAA...........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................GT-CGA------------------------------------------------------------------------------------ACTTGTCAACTAAA............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................GCGCTTGTTTTACAA----------------------------------ATTCT-G.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TTTT-ATAAGT-CGA------------------------------------------------------------------------------------ACTTGTCAA.................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AATAGGACAA--AGTGCTG-----A..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................A------------------------------------------------------------------------------------ACTTGTCAACTAAACCTGGAT-TT..................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CACGCGCTTGTTTTACAA----------------------------------ATTCT-G.............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TTAAGCTTTC-CACGCGCTTGTTTTAC........................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AAAATAGGACAA--AGTGCTG-----AA.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TTTTCGATATCTTAT--------------ATTAAG..............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AAGT-CGA------------------------------------------------------------------------------------ACTTGTCAACT...............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TTGTAAAAATTTT-ATAAGT-CGA------------------------------------------------------------------------------------AAAA......................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................................................................GTAAAAATTTT-ATAAGT-CGA------------------------------------------------------------------------------------CAA.......................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAGCGTTTCAACGAGAAACTCAAGGAACTAGTGGATCAAACCAAGAACAAGTAACAGCC--TTGGTAGTTTTGTGCAAGGATT-----ACGTTACCGTCACTAAATTCAAATAAGTC-ATAGAGAGACC-TTTGTAACTT---AAATTGTATAAAAATC-TGAAGCTAAA------------------------------------------------------------------------------------TCTTGTCATCTTAACCTGAAA-TTTTTTGCGC------------------------------------------------AAAA----------------------------------ATTAT-GAAAAAAAGCG----GGTGCAGTTGTCATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................TAGTTTTGTGCAAGGATT-----ACGTTACCGT......................................................................................................................................................................................................................................................................................................................28112.001200000012
........CAACGAGAAACTCAAGGAA.............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...........................CTAGTGGATCAAACCAAGAACAAG.....................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
............................................................................................TACCGTCACTAAATTCAAATAAGTC-ATAG..............................................................................................................................................................................................................................................................................................2911.0011000000
.................ACTCAAGGAACTAGTGGATCAAACCAA............................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
.........................AACTAGTGGATCAAACCAA............................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
................AACTCAAGGAACTAGTGGATCAAACCA.............................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
...............................................................................................................................................AAATTGTATAAAAATC-TGAAGC..................................................................................................................................................................................................................................................2211.0010000010
.......................................ACCAAGAACAAGTAACAGCC--TTGG.......................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.........AACGAGAAACTCAAGGAACTAGTGGAT....................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...........................CTAGTGGATCAAACCAAGAAC........................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
................AACTCAAGGAACTAGTGGATC...................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...................................................................GTTTTGTGCAAGGATT-----ACGT............................................................................................................................................................................................................................................................................................................................2011.0010000010
.....................................................................TTTGTGCAAGGATT-----ACGTTACC........................................................................................................................................................................................................................................................................................................................2211.0010100000
....................................................AACAGCC--TTGGTAGTTTTGTGCAAGGA.......................................................................................................................................................................................................................................................................................................................................2711.0010000010
..........................................................C--TTGGTAGTTTTGTGCAAG.........................................................................................................................................................................................................................................................................................................................................1911.0010000010
droYak3
CAGCGTTTCAACGAGAAACTCAAGGAACTAGTGGATCAAACCAAGAACAAGTAAAAGCA---TGGTAGTTTTGTACAAGGATA-----ACGTTGCCGTCACTAAATTCAAATT--TC-ATAGACA-AACCTTTGTAACAT---AAATTGTATAAAACTT-ATG--------------------------------------------------------------------------------------------------ATTTTAACTTGG---TTTTTTGCGATATCTGAT--------------ATAGAGCTTTCCCAAGCACTTGTTTCACAA----------------------------------ATGAT--AAAATAGG---A--AGTGCTA-----AAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........CAACGAGAAACTCAAGGAACT...........................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..................................................................................................................................................................G--------------------------------------------------------------------------------------------------ATTTTAACTTGG---TTTTTTGCGAT.........................................................................................................................2411.00100000010000
................AACTCAAGGAACTAGTGG......................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.............AGAAACTCAAGGAACTAGTGG......................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
....GTTTCAACGAGAAACTCAAG................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...............................................................................................................................................................................................................................................................................................ATCTGAT--------------ATAGAGCTTTCCCT......................................................................................2111.00110000000000
.....TTTCAACGAGAAACTCAAG................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
......TTCAACGAGAAACTCAAGGA..............................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
droEug1
CAGCGTCTCAACGAGAAAGTAAAGGAACTGGTGGACCAAAGCAAGAACAAGTAAAATCA--TGTGTACATTTGTTCATTGCGA-----------GCGTTACTAAATTGAAATAAATCTTTTGAGCGGTCTTCTATAATTGACAAAAACGTATTAACTAA-GTATTCCTATGATTCCTAAGAAATCTTTAATATCTTTAATGTACCTTAATTAGGAATTTGAATAGCTGTTTTAGAACTTGTTCATTATAAA--------------------------GCTTCGG-------------------------------------------------------------------------------------------CT-TATAAAAAGTCAA--CCAGCTA-----GAGSizeHit CountTotal NormTotal
No Reads
droBia1
CAGCGTCTCAACGAAAAAGTGAAGGAACTGGTGGACCAAAGCAAGAACAAGTAACAGGC--TTGGTAGTTTTGTATATGGGGA-----ACGTAGCCGTCACTAAATTCAAATAAATC---TGAGCGAGCTTTTGTAATTT---AAATTGTATAAAAGTT-ATCGC--------------------------------------------------------------------------------TATCTGAATCTGAGTCAATTAAATCTGCAA-GTTTTTGGCAAAACTGAT----------------TGAGGTTCT-TCAGAGACAGTTATTAAA----------------------------------GCTATCGGAATTACGCG-AGTCATGATG-----GCASizeHit CountTotal NormTotal
No Reads
droTak1
CAGCGTCTCAACGAAAAAGTGAAGGAACTGGTGGACCAAAGCAAGAACAAGTAACACCC--TTGGTAGTTTTGTATATGGAAA-----GCGTAACCGTCACTAAATTCAAATAAATCTCTAGGGCGACCTTTTGTAATTT---AAATTGTATAAAAGTTGATCAA--------------------------------------------------------------------------------TATCTAATACTCAGTCAGCACAATCTGGCA-TTTTGTGGCTAATCTGAT--------------TTCGAGGTTTC-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CAGCGTCTCAACGAAAAAGTGAAGGAACTCGTGGACCAAAGCAAGAACAAGTAATGGCC--TTGGTAGTTTTGTACATGGGAACCCCAACCTAACCGTCACTAAATTTGAATATATCCGTTGATCGCCCTTTTGTAAATC---TGTTTGTATAAAAGTTCATCA-C-----------------------------------------------------------------------------------------CAAATCAATTTAACCTGTAATTTTTTTGCGTTTTATTGTAGATGCATTATTGCACTAAGAATTC-CAAACGC-------AGAAATTGAAACTTACTTTTCCCAAAGGGACAAATCTCATTTT---TA-----------AATGGAC-----AACSizeHit CountTotal NormTotal
No Reads
droRho1
CAGCGTCTCAACGAAAAAGTGAAGGAGCTAGTGGACCAAAGCAAGAACAAGTAACGGCC--TTGGTAGTTTTGCACATGGGAA-----TCCTAACCGTCACTAAATTTAATAAAATCTCTTGACCGACATTTTGTAATCC---TAACTGTATAAAAGTT---CAG--------------------------------------------------------------------------------CATGTAAAACTCAGTCAGTTTAGACTCGCC-TTTTTTGTCAT-------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAGCGTCTGAACGAAAAAGTGAAGGAGCTGGTTGACCAAAGCAAGAACAAGTAACAGCC--TTGGTAGTTTTATACTTGGAAA-----ACCTAACCGTCACTAAATTCTAATGAACTTTTTGAGCGTCTTTTTGTAATTT---CATTTGTAAAAATCG----------------------------------------------------------------------------------------------------CTCAATTAAATC-GCTC-TTTTTTGGCTTATATAAA--A-----------TTTGTG----------------------------------------GCCATGAGGAAAAGTTTTATTAT-AAAAAGAAG---C--TGTGCCG---TCTCGSizeHit CountTotal NormTotal
No Reads
droKik1
GAGCGAATGAACGAGAAAGTGAAGGAGCTGATGGACAAAACCAAGCAAAAGTAATTGGCATTTGGTAGTTTTTTACATGGGAA-----GC---AGCGTCACTAAATTCAAAA---T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CAGCGACTGAACGAGAAAGTGAAGGAACTGATGGAGGAAAGCAAGAAAAAGTAATGGCC--TTTGTAGTTTGATA---GGAT------ATCTACACGGCTTTAAATTTAAATAAATCATTTGAGCGAATTTTAGGAATAC---CAATTGAGCAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT----AAAAAATT---G--TCTACCA-----AACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................GATGGAGGAAAGCAAGAAAAA......................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..........ACGAGAAAGTGAAGGAAC............................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..................GTGAAGGAACTGATGGAGGAAAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...........CGAGAAAGTGAAGGAACTGATGGA.....................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
..GCGACTGAACGAGAAAGTGAAG................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
....................GAAGGAACTGATGGAGGAAA................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
CAGCGACTGAACGAGAAAGT....................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................GATGGAGGAAAGCAAGAAAA.......................................................................................................................................................................................................................................................................................................................................................................2011.001000010
...............AAAGTGAAGGAACTGATGGA.....................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..................................................................................................................ATCATTTGAGCGAATTTTAGGA................................................................................................................................................................................................................................................................................2211.001000010
......................................................TGGCC--TTTGTAGTTTGATA---GGAT------ATC.............................................................................................................................................................................................................................................................................................................................2611.001000001
.................................................................................................................................TTTAGGAATAC---CAATTGAGC................................................................................................................................................................................................................................................................2011.001000010
.......................................AGCAAGAAAAAGTAATGGCC--...........................................................................................................................................................................................................................................................................................................................................................2011.001000100
.........................AACTGATGGAGGAAAGCAAGAAAA.......................................................................................................................................................................................................................................................................................................................................................................2411.001000001
........GAACGAGAAAGTGAAGGAACTGAT........................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.................................................................TAGTTTGATA---GGAT------ATCTACACGGC.....................................................................................................................................................................................................................................................................................................................2511.001001000
..........................ACTGATGGAGGAAAGCAAGAA.........................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.......................GGAACTGATGGAGGAAAGCAAGA..........................................................................................................................................................................................................................................................................................................................................................................2311.001000010
............................................................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT----AAAAAATT---G--TCTACC.........2011.001010000
.......................GGAACTGATGGAGGAAAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................2211.001000010
....................................................AATGGCC--TTTGTAGTTTGAT..............................................................................................................................................................................................................................................................................................................................................2011.001000010
............GAGAAAGTGAAGGAACTGATGGA.....................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
...........CGAGAAAGTGAAGGAACTGAT........................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................AAGTGAAGGAACTGATGGAGG...................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................AAGGAACTGATGGAGGAAAGCA.............................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...........................................................................................................TAAATAAATCATTTGAGC...........................................................................................................................................................................................................................................................................................1811.001010000
...................................................................GTTTGATA---GGAT------ATCTACACGGC.....................................................................................................................................................................................................................................................................................................................2311.001000100
.............................GATGGAGGAAAGCAAGAAA........................................................................................................................................................................................................................................................................................................................................................................1911.001000010
..............GAAAGTGAAGGAACTGATGGAGGAA.................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
..................GTGAAGGAACTGATGGAGGAA.................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
........GAACGAGAAAGTGAAGGAACTGATG.......................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.................AGTGAAGGAACTGATGGAGGAAA................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
...........................CTGATGGAGGAAAGCAAGAAA........................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...............AAAGTGAAGGAACTGATGGAGATC.................................................................................................................................................................................................................................................................................................................................................................................2420.501000001
droBip1
CAGCGACTGAACGAGAAAGTAAAGGAACTGATGGAGGACAGCAAGAAAAAGTAATGGCC--TTTGTAGTTT---ACTAGGATA-----TCCACAC-GGCTTTAAATTCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CAGCGAATGAACGACAAGATACGAGAGCTAATTGACGACACAAAGAAGAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................ATACGAGAGCTAATTGACGAC.................................................................................................................................................................................................................................................................................................................................................................................2120.5010010000000
droPer2
CAGCGAATGAACGACAAAATACGAGAGCTAATTGACAACACCAAGAAGAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GAGCGTCTAAATCAGAAGCTGCGCGAATTGGTTGATGATAACAAGAAAAAGTAATTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................GCTGCGCGAATTGGTTGATG...................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
............CAGAAGCTGCGCGAATTGGT........................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.............AGAAGCTGCGCGAATTGGT........................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...CGTCTAAATCAGAAGCTGCGC................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..............GAAGCTGCGCGAATTGGTTGAT....................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
................................TGATGATAACAAGAAAAAGTA...................................................................................................................................................................................................................................................................................................................................................................2111.00101000
................AGCTGCGCGAATTGGTTGATG...................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
................AGCTGCGCGAATTGGTTGATGATA................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
.AGCGTCTAAATCAGAAGCTGC..................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..............GAAGCTGCGCGAATTGGTTGATGATAAC..............................................................................................................................................................................................................................................................................................................................................................................2811.00100100
..............GAAGCTGCGCGAATTGGTT.......................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
................................TGATGATAACAAGAAAAAGTAAT.................................................................................................................................................................................................................................................................................................................................................................2311.00100010
............CAGAAGCTGCGCGAATTGGTT.......................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
....GTCTAAATCAGAAGCTGCGCGAATTGG.........................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.........AATCAGAAGCTGCGCGAAT............................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
....GTCTAAATCAGAAGCTGCGCGAA.............................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
droVir3
GAAAAAATGAATAAAAAAATCCGAGAGCTTATCGATGGAAAAA------AGTAACGTCA--TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................AATCCGAGAGCTTATCGAT....................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
.................AATCCGAGAGCTTATCGATGGA.................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
.......................AGAGCTTATCGATGGAAAAA------AGTAAC.................................................................................................................................................................................................................................................................................................................................................................2611.001000000000100000000000000000000000000000000000000000000000000000
.................................GATGGAAAAA------AGTAACGTCA--...........................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
..................ATCCGAGAGCTTATCGATGGAA................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000010000000000000000000000000000000000000
.......................AGAGCTTATCGATGGAAAA..............................................................................................................................................................................................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
..........ATAAAAAAATCCGAGAGCTTATC.......................................................................................................................................................................................................................................................................................................................................................................................2311.001000000010000000000000000000000000000000000000000000000000000000
..................ATCCGAGAGCTTATCGATG...................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................ATCCGAGAGCTTATCGATGGAAA...............................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
..............................ATCGATGGAAAAA------AGTAACGT...............................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.................................GATGGAAAAA------AGTAACGT...............................................................................................................................................................................................................................................................................................................................................................1811.001000000000000001000000000000000000000000000000000000000000000000
.......................AGAGCTTATCGATGGAAA...............................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000001000000000000000000000000000000000000000000
droMoj3
GAAAAAATGAACAAAAAAATCCGCGAACTCATCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................AAATCCGCGAACTCATCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1911.001100000
droGri2
GAGCGACTGAACGAAAAGATTAGCGAGCTAATCGACGGAA---AGAAAAAGTAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....GACTGAACGAAAAGATTAGCGAGCTA..........................................................................................................................................................................................................................................................................................................................................................................................2611.00101

Generated: 05/18/2015 at 06:12 PM