ID:

dsi_17984

 Coordinate:

3r:10166693-10166745 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10166495_10166692_+]; CDS [3r_10166495_10166692_+]; CDS [3r_10166746_10166893_+]; exon [3r_10166746_10166893_+]; intron [3r_10166693_10166745_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------##################################################
TATCCACAGTTTCGTACTATTTTCAGACTGATTTTGAAGCATTTGAAAAGGTAGGTTATCAACATCAAGAATGCCTCTTTTAAAGTGTCTTCTTTCAACGCAGTCAAATGCGGACCCCATGGAAGCCTTCTTAGCTGTTGTCTGTCAGACTTT
**************************************************..((((..((........))..))))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
 M024
male body		 M053
female body
.....................TTCAGACTGATTTTGAAGCATTTGAAA......................................................................................................... 27 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
...................TTTTCAGACTGATTTTGAAGCATT.............................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................TATTTTCAGACTGATTTTGAAGCATT.............................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................TTCTTAGCTGTTGTCTGTCAGACTT. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..TCCACAGTTTCGTACTATTTTCAGAC............................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................TTCTGACTGATTTTGAACCATTTGAA.......................................................................................................... 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................TTTAGCTGTTGTCTGTCAGACTT. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............CGTACTATTTTCAGACTGATTTTGA.................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................TGCAGACCCCATGGAAGCTTTCTT..................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................TTTCAGACTGATTTTGAAGCATT.............................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
............................................................................................................TGCGGACCCTATGGAAGCTTTCTTAGG.................. 27 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........TCGTACTATTTTCAGACTGATTTTGA.................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........TCGTACTATTTTCAGACTGATTTTGAA................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........TTTCGTACTACTTTCAAACTGAT......................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................AACTGATGTTGAAGGATTTGA........................................................................................................... 21 3 3 0.67 2 0 0 0 0 0 2 0 0 0 0
...............................................................................................................................TTCTTAGCTGTTGTC........... 15 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.................TATTTTCCGACGGAGTTTGAAG.................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................AGCCTTCCAAGCTGTTGTC........... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0
............................................................................................................................GCCTTCCAAGCTGTTGTC........... 18 2 13 0.23 3 0 0 0 0 0 0 0 0 1 2
.................................TTGAAGCATTTGAGTAGG...................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................AGCCTTCCAAGCTGTTGT............ 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1
............................TGATTTTGATGCAGTTGAA.......................................................................................................... 19 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0
..........................ACTGATGTTGAAGGATTT............................................................................................................. 18 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................TTAGCTGTTGTATGT........ 15 1 16 0.13 2 0 2 0 0 0 0 0 0 0 0
......................TCAGACTGATGTTGA.................................................................................................................... 15 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0
...........................CTGATGTTGAAGGATTTGAG.......................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 1 0 0 0 0
........................AAACTGATGTTGAAGGATTT............................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0
............................TGATTTTGATGCAGTTGA........................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.............................GATCTTGAAGGATTTGA........................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..........................ACTGATGTTGAAGGATT.............................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................GGACACCATCGAAGCCT......................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

ATAGGTGTCAAAGCATGATAAAAGTCTGACTAAAACTTCGTAAACTTTTCCATCCAATAGTTGTAGTTCTTACGGAGAAAATTTCACAGAAGAAAGTTGCGTCAGTTTACGCCTGGGGTACCTTCGGAAGAATCGACAACAGACAGTCTGAAA
**************************************************..((((..((........))..))))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
..........................AGACTAAAACTTCGTA............................................................................................................... 16 1 6 0.17 1 1 0 0
..................................................................................................................AGGGTACCTTGGGAAGA...................... 17 2 11 0.09 1 0 1 0
.........................................................................................AAGAAAGTTGAGTCA................................................. 15 1 11 0.09 1 1 0 0
..............................................................................AAATTTCACATGAGAAGGTT....................................................... 20 3 18 0.06 1 0 0 1

Generated: 04/24/2015 at 10:35 AM