ID:

dsi_17976

 Coordinate:

3l:416382-416531 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.9 -27.8 -27.8 -27.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGAGCGAGGATGATCCGAGCCTGATCCATCGGCGCAGAGCTGGAGGCGACGTAAGTACCGTTCTCTGGTGGCGGATCTCTGCGATCTCTGTGCGCATTTCTCCCGGTCACGGGTCAGACATATCAGCCGATCATCGGTGGCATTCGTTCCACTCGCGAGGTGTTGGGGTCACGTCCATCGCTGGACCATGGTTTCTGCCTGTTCTTCCAGAGCCCTCTCTTCTAAAATAATTAGCATGCTTTACTAGCTC
**************************************************************************************........................(((.(((....((((.....(((.((((((......(((((..(((...))).)))))......)))))).)))....))))..))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
................................CGCAGAGCTGGAGGCGAC........................................................................................................................................................................................................ 18 0 1 2.00 2 2 0 0 0
...................................................................................................................................................................................GCTGGACCATGGTTTCTGCCT.................................................. 21 0 1 1.00 1 0 1 0 0
............ATCCGAGCCTGATCCATCGGCGCAGAGC.................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 1 0
.................................GCAGAGCTGGAGGCGACA....................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0
.................................GCAGAGCTGGAGGCGAC........................................................................................................................................................................................................ 17 0 1 1.00 1 1 0 0 0
.........................CCATCGGCGCAGAGCTGGAGGC........................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0
............ATCCGAGCCTGATCCATCG........................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0
......................................................................................TCTGTGCGCATTTCTCCCGGTCACGGG......................................................................................................................................... 27 0 1 1.00 1 0 0 0 1
......................................................................................................................................................................................GGCCCATGGATTATGCCTG................................................. 19 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

TCTCGCTCCTACTAGGCTCGGACTAGGTAGCCGCGTCTCGACCTCCGCTGCATTCATGGCAAGAGACCACCGCCTAGAGACGCTAGAGACACGCGTAAAGAGGGCCAGTGCCCAGTCTGTATAGTCGGCTAGTAGCCACCGTAAGCAAGGTGAGCGCTCCACAACCCCAGTGCAGGTAGCGACCTGGTACCAAAGACGGACAAGAAGGTCTCGGGAGAGAAGATTTTATTAATCGTACGAAATGATCGAG
**************************************************........................(((.(((....((((.....(((.((((((......(((((..(((...))).)))))......)))))).)))....))))..))))))************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
.............AGGCTCGGAATAGGT.............................................................................................................................................................................................................................. 15 1 6 1.83 11 9 2 0 0 0 0 0 0 0 0
.............AGGCTCGGAATAGGTA............................................................................................................................................................................................................................. 16 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GGAGAGAAGATTTTATTAATC................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........CCAGGCTCGGAATAGGTA............................................................................................................................................................................................................................. 18 2 3 0.67 2 0 0 2 0 0 0 0 0 0 0
...........CCAGGCTCGGAATAGGTAA............................................................................................................................................................................................................................ 19 3 13 0.62 8 0 0 6 0 0 0 2 0 0 0
.................................CGTATCGACCTCAGCTGCCTT.................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.............AGGCTCGGAATAGGTAA............................................................................................................................................................................................................................ 17 2 9 0.22 2 1 1 0 0 0 0 0 0 0 0
............CAGGCTCGGAATAGGT.............................................................................................................................................................................................................................. 16 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GTCAAGAAGGACGCGGGAGA................................ 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0
...................................TCTCGGCCTCCGCTGGATG.................................................................................................................................................................................................... 19 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................AAAGACGGACAAGTAG........................................... 16 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0
...........CTACGTTCGGTCTAGGTAG............................................................................................................................................................................................................................ 19 3 20 0.10 2 0 0 0 0 0 0 0 0 1 1
................................................................................................................................................................................................................TCTCGGGAGAAAAGGTT......................... 17 2 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGTTTTATTAATCCTACGAAA........ 21 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................CTAGTCGCCACCGTTAGCAA...................................................................................................... 20 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGAAGGTGTCGGGAG................................. 15 1 12 0.08 1 0 0 0 0 0 1 0 0 0 0
..................................GTCTCGACCGTCGCTGGAT..................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 1 0 0 0 0
.............AGGCTCGGAATAGGTAATC.......................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................CCTGGCACCAAAGACA.................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................TCTGGGCCTCCGCTGGAT..................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................GAGAAGATTTTTTTA................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................GAAGCCACCGTTAGCAA...................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:416332-416581 - dsi_17976 AGAGCGAGGATGATC--------CGAGCCTGATCCATCGGCGCA------GA---------------GCTGGAGGCGACGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGCGGATCTCTGCGATCTCT---------------GT------------GCGCATTTCTCCCGGTCACGGGTCAGACATATCAGCC-----------------------------------------------------GATCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCG-CGAGGTGTTGGGGTCA--C----------------------GTCCATCGCTGG--ACC--ATG-------------------GTTT---------------------------------CTGCCT-------GTTCTTC---CAGAGCC-------CTCTCT----TCTAAAATAATTAGCATGCTTTACTAGC----------------------------------------TC--
droSec2 scaffold_2:474734-474983 - AGAGCGAGGATGATC--------CGAGCCTGATCCATCGGCGCA------GA---------------GCTGGAGGCGACGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGCGGATCTCTGCGATCTCT---------------GT------------GCGCATTTCTCCCGGTCACGGGTCAGACATATCAGCC-----------------------------------------------------GATCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCG-CGAGGTGTTGGGGTCA--C----------------------GTCCATCGCTGG--ATC--ATG-------------------GTTT---------------------------------CTGCCT-------ATTCTTC---CAGAGCC-------CTCTCT----TCTAAAATAATTAGCATGCTTTACTAGC----------------------------------------TC--
dm3 chr3L:452638-452887 - AGAGCGAGGATGATC--------CGAGCCTGATCCATCGGCGCA------GA---------------GCTGGAGGCGACGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGCGGATCTCTGCGATCTCT---------------GC------------GCGCATTTCTCTCGGTCACGGGTCAGACATATCAACC-----------------------------------------------------GATCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCG-CGAGGTGTTGGGGTCA--C----------------------GTCCATCGATGG--ACC--GTG-------------------GTTT---------------------------------CTACCA-------AGTCTTC---CAGAGCC-------CTATCC----TCTGAAATAATTAGCATGCATCACTAGC----------------------------------------TC--
droEre2 scaffold_4784:450567-450818 - AGAGCGAGGATGATC--------CGAGCCTGATCCACCGGCGCA------GAG---------CTGCATCTGGAGGCGACGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGCGGATATCTGCGATCTCT---------------GC------------G---ATTTCTCTCGGTCACGGGTCAGACATATCAGCC-----------------------------------------------------GATCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCG-CGAGGTGTTGGGGTCA--C----------------------GTCCAGCACTGG--ACC--ATG-------------------GTTT---------------------------------CTACCT-------A-TCTTC---CAGAGCC-------CTCTCT----TCTTAACCAATTAGCATGCATCCATAGC----------------------------------------TC--
droYak3 3L:428970-429236 - AGAGCGAGGATGATC--------CCAGCCTGATCCACCGGCGCA------GAGCT---G---CTGCAGCTGGAGGCGACGTAAGTAC---------CGTTCTCTGGTCTCTGG----------------------------------TGGCGGATCTCTGCGATCTCT---------------GC------------GCGCATTTCACTCGGTCACGGGTCAGACACATCAGCC-----------------------------------------------------GCTCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCG-CGAGGTGTTGGGGTCA--C----------------------GTCCA----TGG--AAC--ATG-------------------GTTT---------------------------------CTACCT--ACTATACTCTTC---CAGAGCC-------CTCTCT----TCTTCAATAATTAGCATGCATCAATAGC----------------------------------------TC--
droEug1 scf7180000409184:473120-473389 - AGAGCGAGGATGATC--------CGTGCTTGATCCACCGACGAA------GAG---------TCGGAGCTGCAGGCGACGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGTGGATCTCTGCGATATCT---------------GT------------GTGCTTTTCTCTCGGTTACGGGTCAGCTGTATCAGCA-----------------------------------------------------GATCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCGCCCATGTGTTGGGGTCA--C----------------------GTTCATCGTCGG--ACG--AGA-------------------GTCT---------------------------------CCACTT-------ATTCTCC---TGGAGTC-TCTCCCTCTTCT----GCCCAACTAATTAGCATGCTTCGATAGTTCGCTAT---------------------------------TC--
droBia1 scf7180000300910:517527-517777 - AGAGCGAGGATGATC--------CGTGCCTGATCCGGCGACGAA------GAGTTGGCGACGGAGGAGCTGGTGGCGACGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGCGGATC----------------------------------------------------TCGGTTACGGGTCAGACTTATCAGCG-----------------------------------------------------GATCATCG---G------------------TGG---CATACGTTC---CGC-------------------TCGCCGAGGTGATGGGGTCACAC----------------------GTTCATCTTGGG--ACG--AGG-------------------GTCT---------------------------------CTGCAT-------ATTCCCC---CAGA----------CTCTCTTCCGACCCAACTAATTAGCATGCATCGATAGCTCGCTAT---------------------------------TC--
droTak1 scf7180000415846:265051-265288 + AGAGCGAGGATGATC--------CGTGCCTGATCCACCGGCGCA------GAA---------GTGGAGGAGGTGGCGATGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGCGGTTCTCTCGGATTT---------------------------------------CTC--------------------TCAGCA-----------------------------------------------------GATCATCG---G------------------TGGCAGCATTCGTTC---CAC-------------------TCGTCGAGGTGTTGGGGTCA--CCTCGGGGTCACCACGGTGTTGGGTTCATCAATTA--ATG--GGG-------------------ATCT-----------------------------------A--------------------TAGAGTC-------TCTTCT----ACCCAACTAATTAGCATGCATCGATAGC----------------------------------------TC--
droEle1 scf7180000491249:555449-555715 - AGAGCGAGGATGATCCTC-----CGTGCCTGATCCACCGGCGAA------GACCCACCG---TCGGAGCTGGAGGCGACGTAAGTAC---------CGTTTTCGGG-----------------------------------------TGGCGGATCTAGGCGATCTCT---------------GT------------GGGCTTTCCTCTCGGTTACGGGTCAGACTTATCAGCGGATCATCA-----------------------------------------------TTATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCGCCGAGGTGTTGGGGTCA--C----------------------GTTCATCAATGG--ACG--AGG-------------------GTAT---------------------------------CG-------------TCTTC---TGGTGCC------CACCTCT----GCCCAACTAATTTGCATGCATCGATAGC----------------------------------------TC--
droRho1 scf7180000768314:10719-10995 + AGAGCGAGGATGATC--------CCTGCCTGATCCACCGGCGAG------GAGTTGGAG---TTGGAGCTGGAGGCGACGTAAGTAC---------CGTTCTCGGG-----------------------------------------TGGCGGAACTCTGCGATCTCT---------------GT------------GTGCTTTTCCCTCGGTTACGGGTCAGACATATCAGCGGATCAGCG---------------------------------------------GATCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCGCCGAGGTGTTGGGGTCA--C----------------------GTTCATCAATGG--AAG--AGG-------------------GTCC---------------------------------GCGGTT--ATTAT--TCTTGTAGTAGTGCC-------TCTTCT----ATCCAACTAATTTGCATGCATCAATAGC----------------------------------------TC--
droFic1 scf7180000454105:564050-564330 - AGAGCGAGGACGATC--------CGTGCCTGATCCGCCGGCGAGCGGATCCAGTGGCCA---GTGTAGCTGGCGGCGACGTAAGTACCCAA-GCACCGTTCCCGGG-----------------------------------------TGGCGGATCGCCGCGACCTCT---------------GT------------GG---------TCGCACGCGGGTCACACTCATCAGCGGATCGGCG-----------------------------------------------G---AG---CAGCGAATCAGCGGACCGACCG---CATTCGCTC---CGC-------------------TCGCCGAGGTGTTGGGGTCA--C----------------------GTTCATCAGCGG--TCG--AGG-------------------GTCT---------------------------------CTTC-------------TTC---T-GCGC--------CCCTCT----GCCCAACTAATTAGCATGCCGCGACAGC----------------------------------------TC--
droKik1 scf7180000297989:24966-25246 - AGAGCGAGGAGGATC--------CCTGCCTGATCCGTCGGCGAG------G---------------AGCTGGCGGCGACGTAAGTAC---------CGATTTCAG-------------------------------------------------------------------------------T------------CTCTCTCTCTCTTGGTTACGGGTCG------TCGTCGAATC--------------------------------------------------ATCATCG---G-------------------GCCACGATTCGTTC---CACGCTCGGAACCATCGGAACCTCA-AAAGGTGTCGGGGTCA--C----------------------GCTCATCAATGCCAAGTTGGGA---------------------AT---------------------------------CCGTCTCTCCTCTCTTCTCC---CTGAGTA-------TTTTCT----GGCCAACTAATTAGCATGA-----TGGCTTGCTATTTCGCTGTATTGTAACCTAACTAAA--------TC--
droAna3 scaffold_13337:107469-107549 + AGAGCGAGGAAGATC--------GAAGCCAGGTCTGCCAGCAGC------GATCATCTG---CTGGAGCTG---GAGACGTAAGTAC---------AATTATTCGT-----------------------------------------TAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395155:650089-650159 - AGAGCGAGGAAGATC--------GAAGCCAGGTCTGCCAGCAGA------GATCATCGA---CT---GGTGCTGGAGACGTAAGTAC---------AATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group3a:975251-975597 + dps_2901 CCAGCGAAGATGATCCCCAGATTGGAGTTGGAGTTGGCGTCGGA--------------G---TTGGAGTTGGAGGCGACGTAAGTGAAACC-CCA-CAATCTCTGG-------------GTCTCTTCTCTCTCTCTCCCTCTCTGGGTGTCAG---TCTTCGAGCTTGTTTTTTTTCTTTTTCTT------------GCGTGTGTGTGTCGGTTACGGGTCA------TCATCTGATCATCA-----------------------------------------------T---CA---CAGGCAA-----------------AGG--TGTTCCGTCACGTCTGTCTCCATCCACATC------------------CACAT----------------------CCACATCCATGG--AGT--GGA-------------------GTGC---------------------------------CCGCCCCATCGTCCCTCGTC---C-------TCCACAGGCTGT----AGCCCACTAATTAGCATGCCTCTCT----------------GTACCATAAG-TAACTAAACAGAACGATCTA
droPer2 scaffold_23:1005158-1005507 + CCAGCGAAGATGATCCCCAGATTGGAGTTGGAGTTGGCCGTCCG------GAGTTGGCG---TTGGAGTTGGAGGCGACGTAAGTGAAACCCCCA-CAATCTCTGG-------------GTCTCTTCTCTCTCTC----TCTCTGGGTGTCAG---TCTTCGAGCTTAGTTTTTTTCTTTTTCTT------------GCGTGTGTGTGTCGGTTACGGGTCA------TCATCTGATCATCA-----------------------------------------------T---CA---CAGGCAA-----------------AGG--TGTTCCGTCACGTCTGTCTCCATCCACATC------------------CACAT----------------------CCACATCCATGG--AGT--GGA-------------------GTGT---------------------------------CCACCCCATCGTCCCTCGTC---C-------TCCACAGGCTGT----AGCCCACTAATTAGCATGCCTCCCT----------------GTACCATAAG-TAACTAAACAGAACGATC--
droWil2 scf2_1100000004540:384304-384317 + ATGGGGAAGTGGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:3229689-3229971 - dvi_18158 CCGGCGAGGGGGATG--------CTCGTCAGCC---------------------------------------CAGCGAAGTAAGTAC---------CGTTATCAGCCAGATGGTGAC---------------------------------CGGTTCTCTATAATTGTT---------------GGTGCGTTGGGTC-------TCACCTCGTCCA-------------------------------TGGCGAATTCGTCGCGGTTATCGGCAACTTATCGACAATCG--C---CG---CACG-----------------------------------------------------------------------------------------------------CTCGATTGTGCGCGATTAGCAACCCTGCGCGTTGCTTAAGC--CCCATGCCAAATGCGCTTCAATTTGCATGTCTTTTTGCAT-------CT---G----TTAAGTTATTTGCATTTTCC----ACT-AAACAAAAAACATACTTGACTAAC--------------------------------------------
droMoj3 scaffold_6654:747885-748115 + dmo_2261 CTGGAGAGGACCATG--------AG---------------------------------G---TGGAACGTGCCAGCGAAGTAAGTAC---------CGCTAGCAGCCAG--GGTGAACGGTCTTT-----------------CA---TGGTGGTG----------------------------------TT-GGTATCG---ACTCTC--------------------TAGCCCAATCATCAGCCAAAGCGAATTCGTTGCGGTTATCG---ACTTATCGACAATCG--A---CAAAAACAAAA----------------------------------------------------------------------------------------------------------------ATG--AAA-------------------A--CCCATGCCGAATGCA-TTCAATTTGCATGA-GTTTTGCAT-------GT---G--------------------------------------TTAAATTGTTTTTCTCTC----------------------------------------TC--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGAGCGAGGATGATC--------CGAGCCTGATCCATCGGCGCA------GA---------------GCTGGAGGCGACGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGCGGATCTCTGCGATCTCT---------------GT------------GCGCATTTCTCCCGGTCACGGGTCAGACATATCAGCC-----------------------------------------------------GATCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCG-CGAGGTGTTGGGGTCA--C----------------------GTCCATCGCTGG--ACC--ATG-------------------GTTT---------------------------------CTGCCT-------GTTCTTC---CAGAGCC-------CTCTCT----TCTAAAATAATTAGCATGCTTTACTAGC----------------------------------------TC--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................CGCA------GA---------------GCTGGAGGCGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCTGG--ACC--ATG-------------------GTTT---------------------------------CTGCCT-------..........................................................................................................2111.00110000000000000000
............ATC--------CGAGCCTGATCCATCGGCGCA------GA---------------GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
.........................................GCA------GA---------------GCTGGAGGCGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
.........................................GCA------GA---------------GCTGGAGGCGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.................................CCATCGGCGCA------GA---------------GCTGGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
............ATC--------CGAGCCTGATCCATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
.....................................................................................................................................................................TCT---------------GT------------GCGCATTTCTCCCGGTCACGGG............................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
droSec2
AGAGCGAGGATGATC--------CGAGCCTGATCCATCGGCGCA------GA---------------GCTGGAGGCGACGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGCGGATCTCTGCGATCTCT---------------GT------------GCGCATTTCTCCCGGTCACGGGTCAGACATATCAGCC-----------------------------------------------------GATCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCG-CGAGGTGTTGGGGTCA--C----------------------GTCCATCGCTGG--ATC--ATG-------------------GTTT---------------------------------CTGCCT-------ATTCTTC---CAGAGCC-------CTCTCT----TCTAAAATAATTAGCATGCTTTACTAGC----------------------------------------TC--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................TCTGG-----------------------------------------TGGCGGATCTCTGCGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGG--ATC--ATG-------------------GTTT---------------------------------CTGC...................................................................................................................2111.0010010
.......................CGAGCCTGATCCATCGGCGCA------GA---------------GCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
.......................................GCGCA------GA---------------GCTGGAGGCGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
............................CTGATCCATCGGCGCA------GA---------------G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
dm3
AGAGCGAGGATGATC--------CGAGCCTGATCCATCGGCGCA------GA---------------GCTGGAGGCGACGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGCGGATCTCTGCGATCTCT---------------GC------------GCGCATTTCTCTCGGTCACGGGTCAGACATATCAACC-----------------------------------------------------GATCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCG-CGAGGTGTTGGGGTCA--C----------------------GTCCATCGATGG--ACC--GTG-------------------GTTT---------------------------------CTACCA-------AGTCTTC---CAGAGCC-------CTATCC----TCTGAAATAATTAGCATGCATCACTAGC----------------------------------------TC--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................TGATCCATCGGCGCA------GA---------------GCTGGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GAGGATGATC--------CGAGCCTGATCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CGCA------GA---------------GCTGGAGGCGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000200000000000000000000000000000000000000
..............C--------CGAGCCTGATCCATCGGCGCA------GA---------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CCATCGGCGCA------GA---------------GCTGGAGGCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TCTCTCGGTCACGGGTCAGA.......................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GAGCCTGATCCATCGGCGCA------GA---------------GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GATCATCG---G------------------TGG---CATTCGTTC---........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................ATCGGCGCA------GA---------------GCTGGAGGCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GATGATC--------CGAGCCTGATCCATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................CCTGATCCATCGGCGCA------GA---------------GCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................TCAGACATATCAACC-----------------------------------------------------GATCATCG---G------------------TGG---CAT.................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GCCTGATCCATCGGCGCA------GA---------------GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGTTGGGGTCA--C----------------------GTCCATCGATGG--ACC--G.................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGATC--------CGAGCCTGATCCATCGGCGCA------GA---------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....................................TCGGCGCA------GA---------------GCTGGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GCGCA------GA---------------GCTGGAGGCGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TTGGGGTCA--C----------------------GTCCATCGATG..........................................................................................................................................................................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GATGATC--------CGAGCCTGATCCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............C--------CGAGCCTGATCCATCGGCGCA------GA---------------GCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GAGCCTGATCCATCGGCGCA------GA---------------G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GTAAGTAC---------CGTTCTCTGG-----------------------------------------TGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGCGAGGATGATC--------CGAGCCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GAGGATGATC--------CGAGCCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GAGGATGATC--------CGAGCCTGATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TAAGTAC---------CGTTCTCTGG-----------------------------------------TGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GCCTGATCCATCGGCGCA------GA---------------GCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GAGCCTGATCCATCGGCGCA------GA---------------GCTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TCCATCGGCGCA------GA---------------GCTGGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................GCGCATTTCTCTCGGTCACGG.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................................TCGGCGCA------GA---------------GCTGGAGGCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGGATGATC--------CGAGCCTGATCCATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CATATCAACC-----------------------------------------------------GATCATCG---G------------------TGG---CA..................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CATCGGCGCA------GA---------------GCTGGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.........ATGATC--------CGAGCCTGATCCATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TGATCCATCGGCGCA------GA---------------GCTGGAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CAGACATATCAACC-----------------------------------------------------GATCATCG---G------------------TGG---CAT.................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CGAGGATGATC--------CGAGCCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TCCATCGGCGCA------GA---------------GCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CGAGCCTGATCCATCGGCGCA------GA---------------GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGAGCGAGGATGATC--------CGAGCCTGATCCACCGGCGCA------GAG---------CTGCATCTGGAGGCGACGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGCGGATATCTGCGATCTCT---------------GC------------G---ATTTCTCTCGGTCACGGGTCAGACATATCAGCC-----------------------------------------------------GATCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCG-CGAGGTGTTGGGGTCA--C----------------------GTCCAGCACTGG--ACC--ATG-------------------GTTT---------------------------------CTACCT-------A-TCTTC---CAGAGCC-------CTCTCT----TCTTAACCAATTAGCATGCATCCATAGC----------------------------------------TC--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................CAGACATATCAGCC-----------------------------------------------------GATCATC.................................................................................................................................................................................................................................................................................................................2111.0010000010
......................................GGCGCA------GAG---------CTGCATCTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.................................................................................................................................................................................................................................ATATCAGCC-----------------------------------------------------GATCATCG---G------------------T.........................................................................................................................................................................................................................................................................................1911.0011000000
..............................................................................................................................................................................................................................GACATATCAGCC-----------------------------------------------------GATCATCG---G------------------T.........................................................................................................................................................................................................................................................................................2211.0011000000
.........................................GCA------GAG---------CTGCATCTGGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
...............................................................................GTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGCGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000
........GATGATC--------CGAGCCTGATCCACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..........TGATC--------CGAGCCTGATCCACCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
.........................................GCA------GAG---------CTGCATCTGGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
......................................GGCGCA------GAG---------CTGCATCTGGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.......................................GCGCA------GAG---------CTGCATCTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
droYak3
AGAGCGAGGATGATC--------CCAGCCTGATCCACCGGCGCA------GAGCT---G---CTGCAGCTGGAGGCGACGTAAGTAC---------CGTTCTCTGGTCTCTGG----------------------------------TGGCGGATCTCTGCGATCTCT---------------GC------------GCGCATTTCACTCGGTCACGGGTCAGACACATCAGCC-----------------------------------------------------GCTCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCG-CGAGGTGTTGGGGTCA--C----------------------GTCCA----TGG--AAC--ATG-------------------GTTT---------------------------------CTACCT--ACTATACTCTTC---CAGAGCC-------CTCTCT----TCTTCAATAATTAGCATGCATCAATAGC----------------------------------------TC--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................AGCT---G---CTGCAGCTGGAGGCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...........................................A------GAGCT---G---CTGCAGCTGGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.........................................GCA------GAGCT---G---CTGCAGCTGGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
..................................................GAGCT---G---CTGCAGCTGGAGGCGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...............................ATCCACCGGCGCA------GAGCT---.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
..........................................CA------GAGCT---G---CTGCAGCTGGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEug1
AGAGCGAGGATGATC--------CGTGCTTGATCCACCGACGAA------GAG---------TCGGAGCTGCAGGCGACGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGTGGATCTCTGCGATATCT---------------GT------------GTGCTTTTCTCTCGGTTACGGGTCAGCTGTATCAGCA-----------------------------------------------------GATCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCGCCCATGTGTTGGGGTCA--C----------------------GTTCATCGTCGG--ACG--AGA-------------------GTCT---------------------------------CCACTT-------ATTCTCC---TGGAGTC-TCTCCCTCTTCT----GCCCAACTAATTAGCATGCTTCGATAGTTCGCTAT---------------------------------TC--SizeHit CountTotal NormTotal
No Reads
droBia1
AGAGCGAGGATGATC--------CGTGCCTGATCCGGCGACGAA------GAGTTGGCGACGGAGGAGCTGGTGGCGACGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGCGGATC----------------------------------------------------TCGGTTACGGGTCAGACTTATCAGCG-----------------------------------------------------GATCATCG---G------------------TGG---CATACGTTC---CGC-------------------TCGCCGAGGTGATGGGGTCACAC----------------------GTTCATCTTGGG--ACG--AGG-------------------GTCT---------------------------------CTGCAT-------ATTCCCC---CAGA----------CTCTCTTCCGACCCAACTAATTAGCATGCATCGATAGCTCGCTAT---------------------------------TC--SizeHit CountTotal NormTotal
No Reads
droTak1
AGAGCGAGGATGATC--------CGTGCCTGATCCACCGGCGCA------GAA---------GTGGAGGAGGTGGCGATGTAAGTAC---------CGTTCTCTGG-----------------------------------------TGGCGGTTCTCTCGGATTT---------------------------------------CTC--------------------TCAGCA-----------------------------------------------------GATCATCG---G------------------TGGCAGCATTCGTTC---CAC-------------------TCGTCGAGGTGTTGGGGTCA--CCTCGGGGTCACCACGGTGTTGGGTTCATCAATTA--ATG--GGG-------------------ATCT-----------------------------------A--------------------TAGAGTC-------TCTTCT----ACCCAACTAATTAGCATGCATCGATAGC----------------------------------------TC--SizeHit CountTotal NormTotal
No Reads
droEle1
AGAGCGAGGATGATCCTC-----CGTGCCTGATCCACCGGCGAA------GACCCACCG---TCGGAGCTGGAGGCGACGTAAGTAC---------CGTTTTCGGG-----------------------------------------TGGCGGATCTAGGCGATCTCT---------------GT------------GGGCTTTCCTCTCGGTTACGGGTCAGACTTATCAGCGGATCATCA-----------------------------------------------TTATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCGCCGAGGTGTTGGGGTCA--C----------------------GTTCATCAATGG--ACG--AGG-------------------GTAT---------------------------------CG-------------TCTTC---TGGTGCC------CACCTCT----GCCCAACTAATTTGCATGCATCGATAGC----------------------------------------TC--SizeHit CountTotal NormTotal
No Reads
droRho1
AGAGCGAGGATGATC--------CCTGCCTGATCCACCGGCGAG------GAGTTGGAG---TTGGAGCTGGAGGCGACGTAAGTAC---------CGTTCTCGGG-----------------------------------------TGGCGGAACTCTGCGATCTCT---------------GT------------GTGCTTTTCCCTCGGTTACGGGTCAGACATATCAGCGGATCAGCG---------------------------------------------GATCATCG---G------------------TGG---CATTCGTTC---CAC-------------------TCGCCGAGGTGTTGGGGTCA--C----------------------GTTCATCAATGG--AAG--AGG-------------------GTCC---------------------------------GCGGTT--ATTAT--TCTTGTAGTAGTGCC-------TCTTCT----ATCCAACTAATTTGCATGCATCAATAGC----------------------------------------TC--SizeHit CountTotal NormTotal
No Reads
droFic1
AGAGCGAGGACGATC--------CGTGCCTGATCCGCCGGCGAGCGGATCCAGTGGCCA---GTGTAGCTGGCGGCGACGTAAGTACCCAA-GCACCGTTCCCGGG-----------------------------------------TGGCGGATCGCCGCGACCTCT---------------GT------------GG---------TCGCACGCGGGTCACACTCATCAGCGGATCGGCG-----------------------------------------------G---AG---CAGCGAATCAGCGGACCGACCG---CATTCGCTC---CGC-------------------TCGCCGAGGTGTTGGGGTCA--C----------------------GTTCATCAGCGG--TCG--AGG-------------------GTCT---------------------------------CTTC-------------TTC---T-GCGC--------CCCTCT----GCCCAACTAATTAGCATGCCGCGACAGC----------------------------------------TC--SizeHit CountTotal NormTotal
No Reads
droKik1
AGAGCGAGGAGGATC--------CCTGCCTGATCCGTCGGCGAG------G---------------AGCTGGCGGCGACGTAAGTAC---------CGATTTCAG-------------------------------------------------------------------------------T------------CTCTCTCTCTCTTGGTTACGGGTCG------TCGTCGAATC--------------------------------------------------ATCATCG---G-------------------GCCACGATTCGTTC---CACGCTCGGAACCATCGGAACCTCA-AAAGGTGTCGGGGTCA--C----------------------GCTCATCAATGCCAAGTTGGGA---------------------AT---------------------------------CCGTCTCTCCTCTCTTCTCC---CTGAGTA-------TTTTCT----GGCCAACTAATTAGCATGA-----TGGCTTGCTATTTCGCTGTATTGTAACCTAACTAAA--------TC--SizeHit CountTotal NormTotal
No Reads
droAna3
AGAGCGAGGAAGATC--------GAAGCCAGGTCTGCCAGCAGC------GATCATCTG---CTGGAGCTG---GAGACGTAAGTAC---------AATTATTCGT-----------------------------------------TAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............C--------GAAGCCAGGTCTGCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................................................TCTG---CTGGAGCTG---GAGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
...........GATC--------GAAGCCAGGTCTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
....................................................TCATCTG---CTGGAGCTG---GAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........GATC--------GAAGCCAGGTCTGCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.........................................AGC------GATCATCTG---CTGGAGCTG---GA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droBip1
AGAGCGAGGAAGATC--------GAAGCCAGGTCTGCCAGCAGA------GATCATCGA---CT---GGTGCTGGAGACGTAAGTAC---------AATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CCAGCGAAGATGATCCCCAGATTGGAGTTGGAGTTGGCGTCGGA--------------G---TTGGAGTTGGAGGCGACGTAAGTGAAACC-CCA-CAATCTCTGG-------------GTCTCTTCTCTCTCTCTCCCTCTCTGGGTGTCAG---TCTTCGAGCTTGTTTTTTTTCTTTTTCTT------------GCGTGTGTGTGTCGGTTACGGGTCA------TCATCTGATCATCA-----------------------------------------------T---CA---CAGGCAA-----------------AGG--TGTTCCGTCACGTCTGTCTCCATCCACATC------------------CACAT----------------------CCACATCCATGG--AGT--GGA-------------------GTGC---------------------------------CCGCCCCATCGTCCCTCGTC---C-------TCCACAGGCTGT----AGCCCACTAATTAGCATGCCTCTCT----------------GTACCATAAG-TAACTAAACAGAACGATCTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................GTCGGA--------------G---TTGGAGTTGGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
CCAGCGAAGATGATCCCCAGATTGGAGTTGGAGTTGGCCGTCCG------GAGTTGGCG---TTGGAGTTGGAGGCGACGTAAGTGAAACCCCCA-CAATCTCTGG-------------GTCTCTTCTCTCTCTC----TCTCTGGGTGTCAG---TCTTCGAGCTTAGTTTTTTTCTTTTTCTT------------GCGTGTGTGTGTCGGTTACGGGTCA------TCATCTGATCATCA-----------------------------------------------T---CA---CAGGCAA-----------------AGG--TGTTCCGTCACGTCTGTCTCCATCCACATC------------------CACAT----------------------CCACATCCATGG--AGT--GGA-------------------GTGT---------------------------------CCACCCCATCGTCCCTCGTC---C-------TCCACAGGCTGT----AGCCCACTAATTAGCATGCCTCCCT----------------GTACCATAAG-TAACTAAACAGAACGATC--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............CCCCAGATTGGAGTTGGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003300000
...................GATTGGAGTTGGAGTTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....................................................GTTGGCG---TTGGAGTTGGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droWil2
ATGGGGAAGTGGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CCGGCGAGGGGGATG--------CTCGTCAGCC---------------------------------------CAGCGAAGTAAGTAC---------CGTTATCAGCCAGATGGTGAC---------------------------------CGGTTCTCTATAATTGTT---------------GGTGCGTTGGGTC-------TCACCTCGTCCA-------------------------------TGGCGAATTCGTCGCGGTTATCGGCAACTTATCGACAATCG--C---CG---CACG-----------------------------------------------------------------------------------------------------CTCGATTGTGCGCGATTAGCAACCCTGCGCGTTGCTTAAGC--CCCATGCCAAATGCGCTTCAATTTGCATGTCTTTTTGCAT-------CT---G----TTAAGTTATTTGCATTTTCC----ACT-AAACAAAAAACATACTTGACTAAC--------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CTGGAGAGGACCATG--------AG---------------------------------G---TGGAACGTGCCAGCGAAGTAAGTAC---------CGCTAGCAGCCAG--GGTGAACGGTCTTT-----------------CA---TGGTGGTG----------------------------------TT-GGTATCG---ACTCTC--------------------TAGCCCAATCATCAGCCAAAGCGAATTCGTTGCGGTTATCG---ACTTATCGACAATCG--A---CAAAAACAAAA----------------------------------------------------------------------------------------------------------------ATG--AAA-------------------A--CCCATGCCGAATGCA-TTCAATTTGCATGA-GTTTTGCAT-------GT---G--------------------------------------TTAAATTGTTTTTCTCTC----------------------------------------TC--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................A---TGGTGGTG----------------------------------TT-GGTATCG---ACT..........................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010

Generated: 05/19/2015 at 01:46 AM