ID:

dsi_1792

Coordinate:

3l:8196451-8196600 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-22.3	-22.0	-21.9	-21.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AACTCATCAGCAGTATCATATTCTTTTTTTTTTGCAAGCTTTGCAAAAAGAAATATACACATAATTTATTCATTGTTTACAGGGAAAATGTATGCGACACTGAAAACTGACCTTTGTAATAAGTGGAAAATGAGTTTTCCAGCTAACGAAAAAATTTGCATCCGTCAGCTACTTACATATGCATTGTACTTCAATTTCAGTTGCGAAAACGACAATAATACGCCAATGAATCTAAAATCACTGCAATAAT ************************************************...............((....((((.....(((...((((((((............(((((...(((((((..(((((((....)))))))..))..........)))))...))))).........))))))))...)))))))...))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	M025 embryo
...........................TTTTTTGCAAGCTTTGAA.............................................................................................................................................................................................................	18	1	1	1.00	1	1	0	0	0	0	0	0
...........................TTTTTTGCAAGCTTTGAAAAAGC........................................................................................................................................................................................................	23	3	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................AATAAGTCGAATATGAGGTTTC...............................................................................................................	22	3	1	1.00	1	0	1	0	0	0	0	0
............................................................................................TGCGACACTGAAAACTGACCT.........................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................................................................................GTCAGCGACTTACAT........................................................................	15	1	4	0.50	2	2	0	0	0	0	0	0
..................................................................................................................TGTATTAAGTGGAAAA........................................................................................................................	16	1	10	0.30	3	0	0	0	0	0	3	0
.....................................................................................................GAAAACTGACCTTTGGATT..................................................................................................................................	19	2	4	0.25	1	0	0	0	0	1	0	0
........................TTTTTTTTTGTAAGCTTTGGA.............................................................................................................................................................................................................	21	2	4	0.25	1	0	0	0	0	0	0	1
...........................................................................................................................................................TTGCGTCCGCCAGCTACT.............................................................................	18	2	6	0.17	1	1	0	0	0	0	0	0
..............................TTCGGAAGCTATGCAAAAAG........................................................................................................................................................................................................	20	3	13	0.08	1	0	1	0	0	0	0	0
...............................................................................................................................................................ATGGGTCAGCGACTTACAT........................................................................	19	3	15	0.07	1	0	0	0	0	1	0	0
.................................................................................................................................ATTAGTTTTCCAGCTA.........................................................................................................	16	1	18	0.06	1	0	0	0	0	1	0	0
................................................................................................................................................................TGGGTCAGCGACTTACAT........................................................................	18	3	20	0.05	1	1	0	0	0	0	0	0

Anti-sense strand reads

TTGAGTAGTCGTCATAGTATAAGAAAAAAAAAACGTTCGAAACGTTTTTCTTTATATGTGTATTAAATAAGTAACAAATGTCCCTTTTACATACGCTGTGACTTTTGACTGGAAACATTATTCACCTTTTACTCAAAAGGTCGATTGCTTTTTTAAACGTAGGCAGTCGATGAATGTATACGTAACATGAAGTTAAAGTCAACGCTTTTGCTGTTATTATGCGGTTACTTAGATTTTAGTGACGTTATTA ************************************************...............((....((((.....(((...((((((((............(((((...(((((((..(((((((....)))))))..))..........)))))...))))).........))))))))...)))))))...))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.........................................................................................................................................................TAAACGTAGGCAGTCGATGAA............................................................................	21	0	1	1.00	1	1	0	0	0	0
....................................................................................................ACTTTTGACTGGAAA.......................................................................................................................................	15	0	2	0.50	1	1	0	0	0	0
...........................................................................................TAGGTTGTGCCTTTTGACTG...........................................................................................................................................	20	3	6	0.33	2	0	0	2	0	0
..................................................................ATAGGTAACAAATGTCGC......................................................................................................................................................................	18	2	6	0.33	2	0	2	0	0	0
.................................................................................................................................TACTAAAAAGGTCGACTGATT....................................................................................................	21	3	5	0.20	1	0	1	0	0	0
....................................................................................................................................................TTTTTTAGACGTAGCCAGTCGT................................................................................	22	3	6	0.17	1	0	1	0	0	0
..................................................................ATAGGTAACAAATGTC........................................................................................................................................................................	16	1	7	0.14	1	0	0	0	1	0
..................................................................................................................................................................................................AAAGTCAACGCTTATGAT......................................	18	2	10	0.10	1	0	0	0	0	1
.........................................................................................................................................AGGTCATTTGCTTTTTTA...............................................................................................	18	2	20	0.05	1	0	0	1	0	0
.....TAGTCGGCCTAGGATAAGA..................................................................................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0

Generated: 04/24/2015 at 10:44 AM