dsi_17894

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

AGGAGAAACGGCTGGGCGAGCCCTTCAACGGCAACACGCCCAATGTGGTGGTGGCCAGCAAGCTCTACTCCCGATGGGCGGAGCGGCCAAGGCAGCACGTTGAGAATCACGGCCAATTCCACAACGTCACGCAGCAGTTGCCGCAGGAGTCGGCAATTAAGTTTCAGATCATTCCTCCGCAGCAACAGCAGCAGCAGGATGGGAACTACCAGCAGCAGCAACAGTATCGGGCAAGTCAAATGCTCGCTGC ************************************************.(((((.....(((((...(((...))).))))))))))..((.((((((((.((((........))))..))))))...)).))((((((((.......))))))))..............((((..((.((....)).))...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	GSM343915 embryo	M024 male body	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553488 RT_0-2 hours eggs
....................................................................................................................................AGCAGTTGCCGCAGGAGTCG..................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0
..................................................................................................................................................................................GCAGCAACAGCAGCAGCAGGGTGG................................................	24	1	1	1.00	1	0	1	0	0	0	0	0	0
.....AAACGGCTGGGCGAGCCCTTCAACGGCA.........................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................GCAGGATGGGAACTACCAGCAGCAGC...............................	26	0	1	1.00	1	0	0	1	0	0	0	0	0
.............................................................................................................................GTCACGCAGCAGTTGCCGCAGGAGTCGGC................................................................................................	29	0	1	1.00	1	1	0	0	0	0	0	0	0
....GAGACGTCTGCGCGAGCCCT..................................................................................................................................................................................................................................	20	3	2	0.50	1	0	0	1	0	0	0	0	0
............................................................................GGCCGAGCGGCCAAGG..............................................................................................................................................................	16	1	5	0.40	2	0	0	0	1	1	0	0	0
..............................................................................CCGAGCGGCCAAGGC.............................................................................................................................................................	15	1	17	0.24	4	0	0	0	3	1	0	0	0
.............................................................................GCCGAGCGGCCAAGGC.............................................................................................................................................................	16	1	7	0.14	1	0	0	0	0	0	1	0	0
.............................................................................GCCGAGCGGCCAAGG..............................................................................................................................................................	15	1	18	0.06	1	0	0	0	1	0	0	0	0
...........................................................................GGGCGGAGCGGAGAAGGCTG...........................................................................................................................................................	20	3	19	0.05	1	0	0	0	0	0	0	1	0
...........CCGGGCGAGCCCTCCA...............................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1

TCCTCTTTGCCGACCCGCTCGGGAAGTTGCCGTTGTGCGGGTTACACCACCACCGGTCGTTCGAGATGAGGGCTACCCGCCTCGCCGGTTCCGTCGTGCAACTCTTAGTGCCGGTTAAGGTGTTGCAGTGCGTCGTCAACGGCGTCCTCAGCCGTTAATTCAAAGTCTAGTAAGGAGGCGTCGTTGTCGTCGTCGTCCTACCCTTGATGGTCGTCGTCGTTGTCATAGCCCGTTCAGTTTACGAGCGACG ************************************************.(((((.....(((((...(((...))).))))))))))..((.((((((((.((((........))))..))))))...)).))((((((((.......))))))))..............((((..((.((....)).))...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M025 embryo	SRR553487 NRT_0-2 hours eggs	M023 head	GSM343915 embryo	SRR902008 ovaries	M053 female body
...................................................................................................................TAAGGTGATGCAGTG........................................................................................................................	15	1	8	1.88	15	4	9	2	0	0	0	0	0	0	0
..................................................................................................................TTAAGGTGATGCAGTG........................................................................................................................	16	1	3	1.33	4	0	4	0	0	0	0	0	0	0	0
....................................................................................................................AAGGTGTTGCAGTGC.......................................................................................................................	15	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...............................................................................................................CGGTTAAGGTGTTGCAGTGCGTCGT..................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
....................................................................................................................AAGGTGATGCAGTGTGT.....................................................................................................................	17	2	10	0.90	9	7	0	1	0	0	0	0	0	1	0
.............................................................CGAGATGGGGGCTACCA............................................................................................................................................................................	17	2	4	0.75	3	0	0	1	1	0	1	0	0	0	0
....................................................................................................................AAGGTGATGCAGTGC.......................................................................................................................	15	1	5	0.60	3	1	2	0	0	0	0	0	0	0	0
....................................................CCGGTCGTTCAAGAAGAGTGC.................................................................................................................................................................................	21	3	2	0.50	1	0	0	0	0	1	0	0	0	0	0
..............................................................GAGATGGGGGCTACC.............................................................................................................................................................................	15	1	3	0.33	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................TTAAGGTGATGCAGTGGGAC....................................................................................................................	20	3	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TGTTCCGTGCTGCAACTCT.................................................................................................................................................	19	3	6	0.17	1	0	0	0	0	0	0	1	0	0	0
............................................................ACGAGATGGGGGCTACC.............................................................................................................................................................................	17	2	7	0.14	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................AGGTGATGCAGTGCGCC....................................................................................................................	17	2	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................CGCTTCAGATGTTGCAGTG........................................................................................................................	19	3	11	0.09	1	0	0	0	0	0	0	0	1	0	0
.............................................................CGAGATGGGGGATACC.............................................................................................................................................................................	16	2	13	0.08	1	0	0	1	0	0	0	0	0	0	0
...................CCGGAAGCTGGCGTTGTGCG...................................................................................................................................................................................................................	20	3	13	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................AAGGTGATGCAGTGTGTGG...................................................................................................................	19	3	14	0.07	1	1	0	0	0	0	0	0	0	0	0
.............................................................CGAGATGGGGGGTACC.............................................................................................................................................................................	16	2	19	0.05	1	0	0	0	1	0	0	0	0	0	0
..................................................................TGAGTGCTACCCCCCTTG......................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1
..................................................CAGGGTTCGTTCGAGATG......................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................TAAGGTGATGCAGTGAGTG....................................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:6154765-6155014 +	dsi_17894	AGGAGAAACGGCTGGG-CGAG---CCCTTCAACG------GCAACA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGA----TGGGCGGAGCGGCCAAGGCAG---------------CACGT---TGAGAAT---CACGGCCAATTCCACAAC----------------------------------------------GTCACGCAGCAGTTGCCGCAGGAGTCGGCAATTAAGTTTCAGATCATTCCTCCGCAGCA------------------------------A---CAGCAG---------------CAGCAG-------------GATGGGAACTACCAG------CAGCA------GCAAC---AGTATC------GG---GCAAGTCAAATGC-TCGCTGC
droSec2	scaffold_1:2984607-2984856 +		AGGAGAAACGGCTGGG-CGAG---CCCTTCAACG------GCAACA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGA----TGGGCGGAGCGGCCAAGGCAG---------------CACGT---GGAGAAT---CACGGCCAGTTCCACAAC----------------------------------------------GTCACTCAGCAGTTGCCGCAGGAGTCGGCCATTAAGTTTCAGATCATTCCGCCGCAGCA------------------------------A---CAGCAG---------------CAGCAG-------------GATGGGAACTACCAG------CAGCA------G---C---AGTATC------GGAGTGCAAGTCATATGC-TCGCTGC
dm3	chr2R:5359502-5359751 +		AGGAGAAACGGCTGGG-CGAG---CCCTTCAACG------GCAACA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGA----TGGGCGGAGCGGCCAAGGCAG---------------CACGT---GGATAAT---CACGGCCAGTTCCACAAC----------------------------------------------GTGACGCAGCAGTTGCCGCAGGAGTCAGCCATTAAGTTTCAGATCATTCCGCCGCAGCA------------------------------A---CAGCAG---------------CAGCAG-------------GATGGGAACTACCAG------CAGCA------G---C---AGTATC------GGGGTGGAAGTCAAATGC-TCGCTGC
droEre2	scaffold_4929:8992819-8993080 -		AGGAGAAACGGCTGGG-CGAG---CCCTTCAACA------GCAACA--CGCCCAACG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGA----TGGGCGGAGCGGCCAAGACAG---------------CACGT---GGACAAT---CACGGCCAGTTCCACAAC----------------------------------------------GTCACGCAGCAGTTGCCGCAGGAGTCGGCCATTAAGTTTCAGATCATTCCGCCGCAGCA------------------------------G---CAGCAG---------------CAGCAG-------------GATGGGAACTACCTGCAG---CAGCAGCAGCAGCAGC---AGTATC------GGGGTGCAAGTCATATGC-TCGCCGC
droYak3	2L:18016113-18016365 +		AGGAGAAACGGCTAGG-CGAG---CCTTTCAACA------GCAACG--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGA----TGGGCGGAGCGGCCCAGGCAG---------------CACGT---GGACAAT---CACGGCCAGTTCCACAAC----------------------------------------------GTCACACAGCAGTTGCCGCAGGAATCGGCCATTAAGTTTCAGATCATTCCGCCGCAGCA------------------------------A---CAGCAG---------------CAGCAG-------------GATGGGAACTACCTG------CAGCA------GCAGC---AGTATC------GCGGAGCAAGTCAAATGC-TCGCCGC
droEug1	scf7180000409183:989587-989830 +		AGGAGAAAAGGCTGGG-GGAG---AACTTCAATG------GCAATT--CGCCCAATG-TGGTGGTAGCCAGC---AAGCTCTACTCTCGA----TGGGCAGAGCGGCCAAGACAG---------------CACCT---GGACAAT---CATGGGCAGTTTCATAAT----------------------------------------------GTAACGCAGCAATTGCCACAGGAGTCGGCCATTAAGTTTCAGATCATTCCGCCGCAGCA---------------------------------------G---------------CAGCAG-------------GATGGGAACTACCAA------CAGCA------G---C---AGTATC------GGGGAGCCAGTCAAATGC-TGGCCGC
droBia1	scf7180000301506:1355856-1356111 -		AGGAGAAGCGGCTGGG-CGAG---ACCTTCAACG------GCAACA--CGCCCAACG-TGGTGGTGGCCAGC---AAGCTATACTCCCGC----TGGGCGGAGCGACCCCGACAG---------------CACCT---GGACAAT---CACGGCCAGTTCCACAAT----------------------------------------------GTGACGCAACAGTTGCCGCAGGAATCGGCCATCAAGTTCCAGATCATTCCGCCGCAGCA------------------------------A---CAG------------------CAGCAG-------------GATGGCAGCTATCAG------CAGCAGCAGCAGCAAC---AGTATC------GAGGAGCCAGTCAAATGC-TGGCTAC
droTak1	scf7180000415401:409836-410091 +		AGGAGAAACGGCTGGG-CGAG---ACCTTCAACG------GCAACA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGC----TGGGCGGAGCGGCCGAGGCAG---------------CATTT---GGACAAT---CACGGCCAGTTCCACAAT----------------------------------------------GTCACGCAGCAGTTGCCACAGGAATCGGCCATCAAGTTCCAGATCATTCCGCCGCAGCA---------------------------GCAACAGCAGCAG---------------CAGCAG-------------GATGGGAACTACCAG------CAGCA------G---C---AGTATC------GAGGAGCCAGTCAAATGC-TGGCAGC
droEle1	scf7180000491107:1749251-1749506 -		AGGAGAAGCGGCTGGG-CGAG---TCCTTCAACG------GCAACA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGC----TGGGCGGAGCGGCCCAGGCAG---------------CATCT---GGACAAC---CATGGCCAGTTGCACAAT----------------------------------------------GTCACGCAGCAGTTGCCGCAGGAGTCGGCCATCAAGTTCCAGATCATTCCGCCGCAGCA---------------------------ACAG---CAGCAG---------------CAGCAG-------------GATGGGAACTACCAG------CAGCA------GCAGC---AGTATC------GAGGAGCCAGTCAAATGC-TGGCCGC
droRho1	scf7180000777217:250244-250490 +		AGGAGAAGCGGCTGGG-CGAG---ACCTTCAACG------GCAACA--CGCCCAATG-TGGTGGTGGCCAGC---AAACTCTACTCCCGA----TGGGCGGAGCGGCCAAGGCAG---------------CACCT---GGACAAT---CACGGCCAGTTCCACAAT----------------------------------------------GTCACGCAGCAGTTGCCGCAGGAGTCCGCCATCAAGTTCCAGATCATTCCGCCGCAGCA------------------------------------GCAG---------------CAACAG-------------GATGGGAACTACCAG------CAACA------G---C---AGTATC------GAGGAGCCAGTCAAATGT-TGGCCGC
droFic1	scf7180000453858:1336654-1336921 -		AGGAGAAGCGGCTGGG-CGAG---CCCTTCAACG------GGAACA--CGCCCAACG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGG----TGGGCGGAGCGGCCGCGGCAG---------------CACCT---CGACAAC---CACGGCCAGTTCCACAAC----------------------------------------------GTCACGCAGCAGCTGCCGCAGGAGTCGGCCATCAAGTTCCAGATCATTCCGCCGCAGCA---------------------------GCAA---CACCAG---------------CAGCAG-------------GAAGGGAGCTACCAGCAGCAACAGCAGCAGCAGCAGC---AGTACC------GAGGAGCCAGTCAGATGC-TGGCAGC
droKik1	scf7180000302476:743716-743986 +		AGGAGAAGCGACTAGG-TGAA---CCCTTTAACG------GCAACA--CGCCAAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGC----TGGGCGGAGCGACCAAGGCAG---------------CACAT---GGACAGT---CACGGGCAGTTCCACAAT----------------------------------------------GCCACGCAGCAGTTGCCGCAGGAGTCGGCCATCAAGTTCCAGATCATTCCGCCGCAGCA------------------------------G---CAACAGCAACAACAACAGCAGCAACAGGCAGGACATGG-AGATGGAAGCTATCAG---------------------C---AGTATC------GAGGAGCCAGTCAAATGC-TGGCCGC
droAna3	scaffold_13266:259309-259561 -		AGGAGAAGCGACTGGG-CGAA---GGCTTCAATGCCAATGGCAACG--CACCCAACG-TGGTGGTGGCCAGC---AAGTTGTACTCCCGC----TGGGCGGAGAGACCCAGGCAG---------------CTGGT---GGAGAATCCGCACGGGCAGTTTCACAAT----------------------------------------------GCCACGCAACAGCTGCCCCAGGAGTCGGCCATTAAGTTCCAGATCATTCCGCCACAGCA------------------------------------GCAG---------------CAGCAG-------------GATGGAAGCTATCAA------C---A------G---C---AATATC------GAGGAAACAGTCAGATGT-TGGCCGC
droBip1	scf7180000396730:1278965-1279220 -		AGGAGAAGCGTCTAGG-CGAA---GGCTTCAACGGCAATGGTAATG--CACCCAACG-TGGTGGTGGCCAGC---AAGTTGTACTCTCGC----TGGGCGGAGAGACCCCGGCAG---------------CTGGT---GGAGAATCCCCATGGACAGTTTCACAAT----------------------------------------------GCCACGCAACAGCTGCCACAGGAGTCGGCCATCAAGTTCCAGATCATTCCGCCGCAACA------------------------------G---CAGCAG---------------CAGCAG-------------GATGGAAGCTATCAG------C---A------G---C---AGTATC------GGGGAAACAGTCAGATGT-TGGCCGC
dp5	3:13958630-13958918 -		CAGAGAAGCGACTCAA-CGAGGGGGCCTTCAACG------GCGGCA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTATACTCCCGC----TGGGCGGAGCGGCCGCGCCAGCGCAACGATGGCATGCACCT---GGACAACCCGCACGCACAGTTCCACAAT----------------------------------------------GCCACGCAACAGCTGCCCCAGGAATCGGCCATCAAGTTTCAGATCATTCCTCCTCAACA------------------------------G---CAGCAGC------AGCAGCAACAACAGACGGGACATGG-CGATGGCAGCTATCAG------C---A------G---C---AATATC------GTGGTGCCAATCAGATGC-TGGCCGC
droPer2	scaffold_4:1361092-1361383 +		CAGAGAAGCGACTCAA-CGAGGGGGCCTTCAACG------GCGGCA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTATACTCCCGC----TGGGCGGAGCGGCCGCGCCAGCGCAACGATGGCATGCACCT---GGACAACCCGCACGCACAGTTCCACAAT----------------------------------------------GCCACGCAACAGCTGCCCCAGGAATCGGCCATCAAGTTTCAGATCATTCCTCCTCAACA------------------------------G---CAGCAGC---AACAACAGCAACAGCAGACGGGACATGG-CGATGGCAGCTATCAG------C---A------G---C---AATATC------GTGGTGCCAATCAGATGC-TGGCCGC
droWil2	scf2_1100000004590:1033737-1033978 +		AGGGACAACA-CGAGG-CGCA---GACGCCGACG------ACAACA--CCCACATTGACTGTGTTGGCCAGTGCCACGCCCTATTCGCCAACAGTGAGCAGTTCG---AGGGCAA---------------CACCAGCCTTGGAAT---TAGA--AATGGCCACAATGATGGTGCATCAGCAGCAGCAGCAGGATTATGAATTG------------------------------------------CA--GCCATA----TCAATTGCAGCA------------------------------A---CAACAA---------------CAACAA-------------CATC---ATCATCAG------CAGCAGCA---G---C---AGCA--------------ACAGCTAGA----TCATCTC
droVir3	scaffold_13049:15440374-15440630 +		AACAGCAGCAACTGCAACAAG---TCGATAAACA------TCAACAGCCAGCCAATT-TGGTAGTATCCATT---G----CTA---C-----------CGTAGCGCCCCA-ACTG---------------CAGGT---GCAGCAGC----------------------------------AACAACAGCAAGCT------------------GCCGCGCCACCGCAGCAACATCAG-CAGCAA-CAAACTTCG--CCAGT-----------TGTGCCCCAGCA---------------GCAA---CAGCAGC---AGCAGCAGCAGCAGCAGCCGCCGCA--GCCGGT-GCAA----CAA------C---A------G---CAGCAGCAACAAACACAG---CCAGCACACACGCCCAGTCTC
droMoj3	scaffold_6473:1068988-1069239 -		AGCAGCAGCAGCAGCA-GCAG---CACTAC-CTG------GCACCA--CAGCCGCTG-TCGCCGCTGCC-GC---AGCCGCTGCAGCCGC----AA------------------------CAACTG-TTGCTGGT---GGACAG-----------------------------CAACAGCAGCAGCAACAGCAGTACGGCCAGCAGCCATACGCCCAACAGCAGCAGCAGCAGCAA--------CAACAACAACATCAGC--AGCTCAGCA---------------------------GCAA---CAGCAA---------------CACAGG-------------TGGGGGCGGCAGCAG------CAGCA------GCAGC---AGCG--------GCGGCGGCAACATCACCA-CCGCCGC
droGri2	scaffold_15126:2789900-2790133 +		AGTAGCAGCAGCTGCG-GCAG---C-----AGCA------GCAGCA-----GCAACA-ACATTGCTGCCGCC---AACTGCTGCCGCGGG----CAGCAGCAGTGATGAGGATAG---------------CACCA---GCAG------CAGCTGCAGCAGCACCAA----------------------------------------------GTCCAGCAACAGCAGCAGCAGCGGC-AGCGAC-------------AGC-----------GAAGCAACAGCAACAACTGCAGCTGCAGCAA---CAACAG---------------CAGCAG----------------------CAGCAG------CAGCA------G---CAACAACAA----------CAACAACACAAAATC-CCGCCAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGGAGAAACGGCTGGG-CGAG---CCCTTCAACG------GCAACA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGA----TGGGCGGAGCGGCCAAGGCAG---------------CACGT---TGAGAAT---CACGGCCAATTCCACAAC----------------------------------------------GTCACGCAGCAGTTGCCGCAGGAGTCGGCAATTAAGTTTCAGATCATTCCTCCGCAGCA------------------------------A---CAGCAG---------------CAGCAG-------------GATGGGAACTACCAG------CAGCA------GCAAC---AGTATC------GG---GCAAGTCAAATGC-TCGCTGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................AGCAGTTGCCGCAGGAGTCG........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....AAACGGCTGGG-CGAG---CCCTTCAACG------GCA............................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GCAG-------------GATGGGAACTACCAG------CAGCA------GC............................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GTCACGCAGCAGTTGCCGCAGGAGTCGGC......................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGGAGAAACGGCTGGG-CGAG---CCCTTCAACG------GCAACA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGA----TGGGCGGAGCGGCCAAGGCAG---------------CACGT---GGAGAAT---CACGGCCAGTTCCACAAC----------------------------------------------GTCACTCAGCAGTTGCCGCAGGAGTCGGCCATTAAGTTTCAGATCATTCCGCCGCAGCA------------------------------A---CAGCAG---------------CAGCAG-------------GATGGGAACTACCAG------CAGCA------G---C---AGTATC------GGAGTGCAAGTCATATGC-TCGCTGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................CTACTCCCGA----TGGGCGGAGCGGC............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................ACTACCAG------CAGCA------G---C---AGTAT.................................	20	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................TTCAGATCATTCCGCCGCAGCA------------------------------A---C.....................................................................................................................	24	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................GCAG---------------CAGCAG-------------GATGGGAACT....................................................................	20	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................GCAGCA------------------------------A---CAGCAG---------------CAGCAG-------------GA............................................................................	21	6	0.17	1	0	0	1	0
...........................................................................................................................................................................................................................................................................AGCA------------------------------A---CAGCAG---------------CAGCAG-------------GA............................................................................	19	11	0.09	1	0	0	1	0

dm3

AGGAGAAACGGCTGGG-CGAG---CCCTTCAACG------GCAACA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGA----TGGGCGGAGCGGCCAAGGCAG---------------CACGT---GGATAAT---CACGGCCAGTTCCACAAC----------------------------------------------GTGACGCAGCAGTTGCCGCAGGAGTCAGCCATTAAGTTTCAGATCATTCCGCCGCAGCA------------------------------A---CAGCAG---------------CAGCAG-------------GATGGGAACTACCAG------CAGCA------G---C---AGTATC------GGGGTGGAAGTCAAATGC-TCGCTGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................AGTTCCACAAC----------------------------------------------GTGACGCAGCAG.......................................................................................................................................................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TCTACTCCCGA----TGGGCGGAGCGGCCAA.........................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................AGCCATTAAGTTTCAGATCATTCCGCC..............................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CCAG------CAGCA------G---C---AGTATC------GGGGT.....................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ATTCCGCCGCAGCA------------------------------A---CAGCAG---------------CAG..............................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CCAG------CAGCA------G---C---AGTATC------GGGGTG....................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................A------------------------------A---CAGCAG---------------CAGCAG-------------GATGGGAAC.....................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GACGCAGCAGTTGCCGCAGGAGTCA........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TCCGCCGCAGCA------------------------------A---CAGCAG---------------CAGCAG-------------GA............................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CGCAGCAGTTGCCGCAGGAGTCAGCC.....................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGGAGAAACGGCTGGG-CGAG---CCCTTCAACA------GCAACA--CGCCCAACG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGA----TGGGCGGAGCGGCCAAGACAG---------------CACGT---GGACAAT---CACGGCCAGTTCCACAAC----------------------------------------------GTCACGCAGCAGTTGCCGCAGGAGTCGGCCATTAAGTTTCAGATCATTCCGCCGCAGCA------------------------------G---CAGCAG---------------CAGCAG-------------GATGGGAACTACCTGCAG---CAGCAGCAGCAGCAGC---AGTATC------GGGGTGCAAGTCATATGC-TCGCCGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGC---AGTATC------GGGGTGCAA.................	26	1	2.00	2	0	0	0	0	2	0	0
....................................................................CAGC---AAGCTCTACTCCCGA----TGGGC....................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	1	0	0	0	1	0	0
....GAAACGGCTGGG-CGAG---CCCTTCAAC......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................CACGT---GGACAAT---CACGGCC............................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................CAGC---AAGCTCTACTCCCGA----TGGGCG...................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
..................................................CCCAACG-TGGTGGTGGCCAC................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.................................................................................TACTCCCGA----TGGGCGGAGCGGC............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................AGCAGC---AGTATC------GGGGTGCAAGT...............	23	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AAGTTTCAGATCATTCCGCCGCAGC.........................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................GGAGCGGCCAAGACAG---------------CA...................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC---AGTATC------GGGGTGCAA.................	23	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................TTCCGCCGCAGCA------------------------------G---CAGCA.................................................................................................................	19	2	0.50	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CCGCCGCAGCA------------------------------G---CAGCAG---------------C................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0

droYak3

AGGAGAAACGGCTAGG-CGAG---CCTTTCAACA------GCAACG--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGA----TGGGCGGAGCGGCCCAGGCAG---------------CACGT---GGACAAT---CACGGCCAGTTCCACAAC----------------------------------------------GTCACACAGCAGTTGCCGCAGGAATCGGCCATTAAGTTTCAGATCATTCCGCCGCAGCA------------------------------A---CAGCAG---------------CAGCAG-------------GATGGGAACTACCTG------CAGCA------GCAGC---AGTATC------GCGGAGCAAGTCAAATGC-TCGCCGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................CTACTCCCGA----TGGGCGGAGCGGC............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................ATTAAGTTTCAGATCATTCCGCC..............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AG-------------GATGGGAACTACCTG------CAGCA------..............................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................A------------------------------A---CAGCAG---------------CAGCAG-------------GATGGGAACTACCT................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................TCAGATCATTCCGCCGCAG..........................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CACGGCCAGTTCCACAAC----------------------------------------------GTC................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GCAG-------------GATGGGAACTACCTG------CAGCA------..............................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AGGAGAAAAGGCTGGG-GGAG---AACTTCAATG------GCAATT--CGCCCAATG-TGGTGGTAGCCAGC---AAGCTCTACTCTCGA----TGGGCAGAGCGGCCAAGACAG---------------CACCT---GGACAAT---CATGGGCAGTTTCATAAT----------------------------------------------GTAACGCAGCAATTGCCACAGGAGTCGGCCATTAAGTTTCAGATCATTCCGCCGCAGCA---------------------------------------G---------------CAGCAG-------------GATGGGAACTACCAA------CAGCA------G---C---AGTATC------GGGGAGCCAGTCAAATGC-TGGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGGAGAAGCGGCTGGG-CGAG---ACCTTCAACG------GCAACA--CGCCCAACG-TGGTGGTGGCCAGC---AAGCTATACTCCCGC----TGGGCGGAGCGACCCCGACAG---------------CACCT---GGACAAT---CACGGCCAGTTCCACAAT----------------------------------------------GTGACGCAACAGTTGCCGCAGGAATCGGCCATCAAGTTCCAGATCATTCCGCCGCAGCA------------------------------A---CAG------------------CAGCAG-------------GATGGCAGCTATCAG------CAGCAGCAGCAGCAAC---AGTATC------GAGGAGCCAGTCAAATGC-TGGCTAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGGAGAAACGGCTGGG-CGAG---ACCTTCAACG------GCAACA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGC----TGGGCGGAGCGGCCGAGGCAG---------------CATTT---GGACAAT---CACGGCCAGTTCCACAAT----------------------------------------------GTCACGCAGCAGTTGCCACAGGAATCGGCCATCAAGTTCCAGATCATTCCGCCGCAGCA---------------------------GCAACAGCAGCAG---------------CAGCAG-------------GATGGGAACTACCAG------CAGCA------G---C---AGTATC------GAGGAGCCAGTCAAATGC-TGGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGGAGAAGCGGCTGGG-CGAG---TCCTTCAACG------GCAACA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGC----TGGGCGGAGCGGCCCAGGCAG---------------CATCT---GGACAAC---CATGGCCAGTTGCACAAT----------------------------------------------GTCACGCAGCAGTTGCCGCAGGAGTCGGCCATCAAGTTCCAGATCATTCCGCCGCAGCA---------------------------ACAG---CAGCAG---------------CAGCAG-------------GATGGGAACTACCAG------CAGCA------GCAGC---AGTATC------GAGGAGCCAGTCAAATGC-TGGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGGAGAAGCGGCTGGG-CGAG---ACCTTCAACG------GCAACA--CGCCCAATG-TGGTGGTGGCCAGC---AAACTCTACTCCCGA----TGGGCGGAGCGGCCAAGGCAG---------------CACCT---GGACAAT---CACGGCCAGTTCCACAAT----------------------------------------------GTCACGCAGCAGTTGCCGCAGGAGTCCGCCATCAAGTTCCAGATCATTCCGCCGCAGCA------------------------------------GCAG---------------CAACAG-------------GATGGGAACTACCAG------CAACA------G---C---AGTATC------GAGGAGCCAGTCAAATGT-TGGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGGAGAAGCGGCTGGG-CGAG---CCCTTCAACG------GGAACA--CGCCCAACG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGG----TGGGCGGAGCGGCCGCGGCAG---------------CACCT---CGACAAC---CACGGCCAGTTCCACAAC----------------------------------------------GTCACGCAGCAGCTGCCGCAGGAGTCGGCCATCAAGTTCCAGATCATTCCGCCGCAGCA---------------------------GCAA---CACCAG---------------CAGCAG-------------GAAGGGAGCTACCAGCAGCAACAGCAGCAGCAGCAGC---AGTACC------GAGGAGCCAGTCAGATGC-TGGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGGAGAAGCGACTAGG-TGAA---CCCTTTAACG------GCAACA--CGCCAAATG-TGGTGGTGGCCAGC---AAGCTCTACTCCCGC----TGGGCGGAGCGACCAAGGCAG---------------CACAT---GGACAGT---CACGGGCAGTTCCACAAT----------------------------------------------GCCACGCAGCAGTTGCCGCAGGAGTCGGCCATCAAGTTCCAGATCATTCCGCCGCAGCA------------------------------G---CAACAGCAACAACAACAGCAGCAACAGGCAGGACATGG-AGATGGAAGCTATCAG---------------------C---AGTATC------GAGGAGCCAGTCAAATGC-TGGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGGAGAAGCGACTGGG-CGAA---GGCTTCAATGCCAATGGCAACG--CACCCAACG-TGGTGGTGGCCAGC---AAGTTGTACTCCCGC----TGGGCGGAGAGACCCAGGCAG---------------CTGGT---GGAGAATCCGCACGGGCAGTTTCACAAT----------------------------------------------GCCACGCAACAGCTGCCCCAGGAGTCGGCCATTAAGTTCCAGATCATTCCGCCACAGCA------------------------------------GCAG---------------CAGCAG-------------GATGGAAGCTATCAA------C---A------G---C---AATATC------GAGGAAACAGTCAGATGT-TGGCCGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................GCAG---------------CAGCAG-------------GATGGAAGCTAT..................................................................	22	1	1.00	1	0	0	0	0	1	0
............................................................................................................CAGGCAG---------------CTGGT---GGAGAAT......................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................AGCAG-------------GATGGAAGCTATCAA------C---A------G---C---......................................	24	1	1.00	1	0	1	0	0	0	0
.............................................................................GTTGTACTCCCGC----TGGGCGGAGA...............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................CGCAACAGCTGCCCCAGGA............................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
....................................AATGGCAACG--CACCCAACG-TGGC.........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................GTCGGCCATTAAGTTCCAGATCATTCC.................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................CATTAAGTTCCAGATCATTCC.................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
AGGAGAAGCGACTGGG-CGAA---GGC............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................ACAGCTGCCCCAGGAGTCGGCCATTAAG...............................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................GGCAG---------------CTGGT---GGAGAATCCGCACG...............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0

droBip1

AGGAGAAGCGTCTAGG-CGAA---GGCTTCAACGGCAATGGTAATG--CACCCAACG-TGGTGGTGGCCAGC---AAGTTGTACTCTCGC----TGGGCGGAGAGACCCCGGCAG---------------CTGGT---GGAGAATCCCCATGGACAGTTTCACAAT----------------------------------------------GCCACGCAACAGCTGCCACAGGAGTCGGCCATCAAGTTCCAGATCATTCCGCCGCAACA------------------------------G---CAGCAG---------------CAGCAG-------------GATGGAAGCTATCAG------C---A------G---C---AGTATC------GGGGAAACAGTCAGATGT-TGGCCGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAGAGAAGCGACTCAA-CGAGGGGGCCTTCAACG------GCGGCA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTATACTCCCGC----TGGGCGGAGCGGCCGCGCCAGCGCAACGATGGCATGCACCT---GGACAACCCGCACGCACAGTTCCACAAT----------------------------------------------GCCACGCAACAGCTGCCCCAGGAATCGGCCATCAAGTTTCAGATCATTCCTCCTCAACA------------------------------G---CAGCAGC------AGCAGCAACAACAGACGGGACATGG-CGATGGCAGCTATCAG------C---A------G---C---AATATC------GTGGTGCCAATCAGATGC-TGGCCGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................AAGCTATACTCCCGC----TGGC.....................................................................................................................................................................................................................................................................................................................................	19	1	117.00	117	0	116	1	0	0	0	0	0	0	0
...........................................................................AAGCTATACTCCCGC----TGGCGA...................................................................................................................................................................................................................................................................................................................................	21	1	80.00	80	0	78	0	0	0	0	2	0	0	0
...........................................................................AAGCTATACTCCCGC----TGGCG....................................................................................................................................................................................................................................................................................................................................	20	1	53.00	53	0	51	0	0	0	0	2	0	0	0
............................................................................AGCTATACTCCCGC----TGGCGA...................................................................................................................................................................................................................................................................................................................................	20	2	47.50	95	0	92	0	0	0	0	3	0	0	0
............................................................................AGCTATACTCCCGC----TGGC.....................................................................................................................................................................................................................................................................................................................................	18	1	34.00	34	0	34	0	0	0	0	0	0	0	0
............................................................................AGCTATACTCCCGC----TGGCG....................................................................................................................................................................................................................................................................................................................................	19	1	10.00	10	0	10	0	0	0	0	0	0	0	0
...........................................................................AAGCTATACTCCCGC----TGG......................................................................................................................................................................................................................................................................................................................................	18	1	8.00	8	0	8	0	0	0	0	0	0	0	0
...........................................................................AAGCTATACTCCCGC----TGGCGT...................................................................................................................................................................................................................................................................................................................................	21	2	1.50	3	0	2	0	0	0	0	1	0	0	0
...........................................................................AAGCTATACTCCCGC----TGGGGA...................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................CTTCAACG------GCGGCA--CGCCCAATG-TGGT.........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................GCTATACTCCCGC----TGGGCGGAGCGG.............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................ATC------GTGGTGCCAATCAGATGC-TGGC...	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................AAGCTATACTCCCGC----TGGCA....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................GCTATACTCCCGC----TGGGCGGAGCGGC............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................ATC------GTGGTGCCAATCAGATGC-TGGCC..	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................AGCTATACTCCCGC----TGGCGT...................................................................................................................................................................................................................................................................................................................................	20	5	1.00	5	0	5	0	0	0	0	0	0	0	0
................................................................................................................................................................CACAAT----------------------------------------------GCCACGCAACAGCT.....................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................GCTATACTCCCGC----TGGCGA...................................................................................................................................................................................................................................................................................................................................	19	12	0.83	10	0	10	0	0	0	0	0	0	0	0
.............................................................................GCTATACTCCCGC----TGGCG....................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................CTATACTCCCGC----TGGCGA...................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	2	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................AGCAGC------AGCAGCAACAACAG...........................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CAGCAGC------AGCAGCAACAACA............................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

CAGAGAAGCGACTCAA-CGAGGGGGCCTTCAACG------GCGGCA--CGCCCAATG-TGGTGGTGGCCAGC---AAGCTATACTCCCGC----TGGGCGGAGCGGCCGCGCCAGCGCAACGATGGCATGCACCT---GGACAACCCGCACGCACAGTTCCACAAT----------------------------------------------GCCACGCAACAGCTGCCCCAGGAATCGGCCATCAAGTTTCAGATCATTCCTCCTCAACA------------------------------G---CAGCAGC---AACAACAGCAACAGCAGACGGGACATGG-CGATGGCAGCTATCAG------C---A------G---C---AATATC------GTGGTGCCAATCAGATGC-TGGCCGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................................................................ACAGCTGCCCCAGGAATCGGC......................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................ATGCACCT---GGACAACCCGCACG...............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................AACAGCAGACGGGACATGG-CGATG..........................................................................	24	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................GCAGC---AACAACAGCAACAGCAG...........................................................................................	22	20	0.15	3	0	3	0	0	0	0
............................................................................................................................................................................................................................................................................ACA------------------------------G---CAGCAGC---AACAACA.....................................................................................................	18	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................GCAGC---AACAACAGCAACAGCA............................................................................................	21	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................GCAGC---AACAACAGCAACAGC.............................................................................................	20	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AGC---AACAACAGCAACAGCA............................................................................................	19	20	0.05	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................AGCAGC---AACAACAGCAACAGCAG...........................................................................................	23	20	0.05	1	0	1	0	0	0	0

droWil2

AGGGACAACA-CGAGG-CGCA---GACGCCGACG------ACAACA--CCCACATTGACTGTGTTGGCCAGTGCCACGCCCTATTCGCCAACAGTGAGCAGTTCG---AGGGCAA---------------CACCAGCCTTGGAAT---TAGA--AATGGCCACAATGATGGTGCATCAGCAGCAGCAGCAGGATTATGAATTG------------------------------------------CA--GCCATA----TCAATTGCAGCA------------------------------A---CAACAA---------------CAACAA-------------CATC---ATCATCAG------CAGCAGCA---G---C---AGCA--------------ACAGCTAGA----TCATCTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................CAACAGTGAGCAGTTCG---AG.........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AA-------------CATC---ATCATCAG------CAGCAGCA---..............................................	22	7	0.29	2	0	0	0	1	1
.........................................................................................................................................................................................................................................................................................................................................CAA-------------CATC---ATCATCAG------CAGCAGC..................................................	22	6	0.17	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................AACAA-------------CATC---ATCATCAG------CA.......................................................	19	10	0.10	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................CAA-------------CATC---ATCATCAG------CAGC.....................................................	19	12	0.08	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................AATTGCAGCA------------------------------A---CAACAA---------------CA...............................................................................................	19	13	0.08	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................ATC---ATCATCAG------CAGCAGCA---G---C---......................................	21	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................CATC---ATCATCAG------CAGCAGCA---G---C---......................................	22	20	0.05	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA---G---C---AGCA--------------ACAGCT..............	20	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CATC---ATCATCAG------CAGCAGCA---G---C---AGC...................................	25	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CATCAG------CAGCAGCA---G---C---AGCA--------------....................	20	20	0.05	1	0	0	0	1	0

droVir3

AACAGCAGCAACTGCAACAAG---TCGATAAACA------TCAACAGCCAGCCAATT-TGGTAGTATCCATT---G----CTA---C-----------CGTAGCGCCCCA-ACTG---------------CAGGT---GCAGCAGC----------------------------------AACAACAGCAAGCT------------------GCCGCGCCACCGCAGCAACATCAG-CAGCAA-CAAACTTCG--CCAGT-----------TGTGCCCCAGCA---------------GCAA---CAGCAGC---AGCAGCAGCAGCAGCAGCCGCCGCA--GCCGGT-GCAA----CAA------C---A------G---CAGCAGCAACAAACACAG---CCAGCACACACGCCCAGTCTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................ACAGCCAGCCAATT-TGGTA........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AAACA------TCAACAGCCAGCCAATT-TGGT.........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................AGTATCCATT---G----CTA---C-----------CGTAGCGCCCCA-A.......................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AACTGCAACAAG---TCGATAAACA------TC.............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGCAGCAACTGCAACAAG---TCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GCAACAAG---TCGATAAACA------TCA............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................ACAGCAAGCT------------------GCCGCGCCAC.........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................A---C-----------CGTAGCGCCCCA-ACTG---------------CAGGT---GCA..........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TCCATT---G----CTA---C-----------CGTAGCGCC............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................CG--CCAGT-----------TGTGCCCCAGCA---------------GCAA---CAGC..................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TCG--CCAGT-----------TGTGCCCCAGCA---------------.............................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GCAACTGCAACAAG---TCGATAAACA------TCAAC..........................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................C----------------------------------AACAACAGCAAGCT------------------GCCGCGC............................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GTAGCGCCCCA-ACTG---------------CAGGT---GCA..........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AGCAGC----------------------------------AACAACAGCAAGCT------------------...................................................................................................................................................................................................................	20	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CAACAGCAAGCT------------------GCCGCGCC...........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GATAAACA------TCAACAGCCAGC...................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................GCCGCA--GCCGGT-GCAA----CAA------C---A------G---CAG.......................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TA---C-----------CGTAGCGCCCCA-ACTG---------------CAGGT---GC...........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................A---C-----------CGTAGCGCCCCA-ACTG---------------CAGGT---GC...........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTATCCATT---G----CTA---C-----------CGTAGC...............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CACCGCAGCAACATCAG-C.........................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................C---AGCAGCAGCAGCAGCAGC..........................................................................................	19	20	0.30	6	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCCGCCGCA--GC...............................................................................	26	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................CAGCA---------------GCAA---CAGCAGC---AGC.........................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AGCAACATCAG-CAGCAA-C..................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCCGCCGC....................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCCGCCG.....................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................AGCA---------------GCAA---CAGCAGC---AGCAGCA.....................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................A---CAGCAGC---AGCAGCAGCAGCA...............................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCCGCCGCA--GC...............................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................AGCAGC---AGCAGCAGCAGCAGCAGC..........................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................T---GCAGCAGC----------------------------------AACAACAGCA.........................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CAA---CAGCAGC---AGCAGCAGCA..................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AA----CAA------C---A------G---CAGCAGCAACA...............................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................CAA---CAGCAGC---AGCAGCAGC...................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................T-GCAA----CAA------C---A------G---CAGCAGCA..................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCAGCAGCAGCAGCA-GCAG---CACTAC-CTG------GCACCA--CAGCCGCTG-TCGCCGCTGCC-GC---AGCCGCTGCAGCCGC----AA------------------------CAACTG-TTGCTGGT---GGACAG-----------------------------CAACAGCAGCAGCAACAGCAGTACGGCCAGCAGCCATACGCCCAACAGCAGCAGCAGCAGCAA--------CAACAACAACATCAGC--AGCTCAGCA---------------------------GCAA---CAGCAA---------------CACAGG-------------TGGGGGCGGCAGCAG------CAGCA------GCAGC---AGCG--------GCGGCGGCAACATCACCA-CCGCCGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................................................................GCAGCAA--------CAACAACAACATCAGC--AGCTC............................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
.................................................AGCCGCTG-TCGCCGCTGCC-GC---AGC.........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................ACAGG-------------TGGGGGCGGCAGCAG------.........................................................	20	1	1.00	1	0	0	0	0	0	1
............................................................GCCGCTGCC-GC---AGCCGCTGCAGCCGC----A........................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	1	0
....GCAGCAGCAGCA-GCAG---CACTAC-C.......................................................................................................................................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	0	0	0	1	0
............................................................GCCGCTGCC-GC---AGCCGCTGC...................................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................GCAG------CAGCA------GCAGC---AGCG--------GCGGCGGCA.................	27	9	0.11	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................G------CAGCA------GCAGC---AGCG--------GCGGCGGCA.................	24	10	0.10	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................AGCA------GCAGC---AGCG--------GCGGCGGCA.................	22	12	0.08	1	0	0	0	0	1	0
....................................................................................................................................................................................................................GCCCAACAGCAGCAGCAGC................................................................................................................................................................................................	19	18	0.06	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CA------GCAGC---AGCG--------GCGGCGGCA.................	20	19	0.05	1	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................GCAGCAG------CAGCA------GCAGC---AGCG--------GCGGC.....................	26	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................GCAGCAGCAGCAA--------CAACAAC............................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................AGCAGCAA--------CAACAACAACAT.......................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................A------GCAGC---AGCG--------GCGGCGGCA.................	19	20	0.05	1	0	0	0	0	1	0
.GCAGCAGCAGCAGCA-GCAG---CA.............................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droGri2

AGTAGCAGCAGCTGCG-GCAG---C-----AGCA------GCAGCA-----GCAACA-ACATTGCTGCCGCC---AACTGCTGCCGCGGG----CAGCAGCAGTGATGAGGATAG---------------CACCA---GCAG------CAGCTGCAGCAGCACCAA----------------------------------------------GTCCAGCAACAGCAGCAGCAGCGGC-AGCGAC-------------AGC-----------GAAGCAACAGCAACAACTGCAGCTGCAGCAA---CAACAG---------------CAGCAG----------------------CAGCAG------CAGCA------G---CAACAACAA----------CAACAACACAAAATC-CCGCCAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................................................................................................GTCCAGCAACAGCAGCAGC................................................................................................................................................................................................	19	7	0.14	1	1	0
............................................................................................................................................................................................................................................................................................................AA---CAACAG---------------CAGCAG----------------------CAGCAG------CAGCA------G---CA........................................	28	20	0.05	1	1	0
........................................................................................................................................................................................................................................................................................................................................GCAG----------------------CAGCAG------CAGCA------G---CAACAACAA----------CA.....................	27	20	0.05	1	1	0
.........................................................................................................................................................................................................................................................................................................................................CAG----------------------CAGCAG------CAGCA------G---CAACAACAA----------CA.....................	26	20	0.05	1	1	0
............TGCG-GCAG---C-----AGCA------GCAGCA-----G...................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0
.............................................................................................................................................................................................................................................................................................................A---CAACAG---------------CAGCAG----------------------CAGCAG------CAG......................................................	22	20	0.05	1	1	0
.................................................................................................................................................................................................................................................................................................................................................................................CA------G---CAACAACAA----------CAACAACAC..............	21	20	0.05	1	1	0
.............................................................................................................................................................................................................................................................................................................A---CAACAG---------------CAGCAG----------------------CAGCAG------CAGCA------..............................................	24	20	0.05	1	1	0

dsi_17894

2r:6154815-6154964 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-42.1	-41.9	-41.7