dsi_17883

GATGCCAAACAAGGAGAGGACGGGGTTCCTGCCCCCAACTTCATGTTCTGTACTTAACGACGATATAATGAACCGTGAATTGCATGAGTGCAGTAGCTGGTAACTGAGAAAATAACAACTCCAAAGGCAACCACTGTTAAATCGACAGCACAGACAAAAACCCAAAAGACAACGACTGAAAAGGCCACAACAGAGCCAACAACTGAGAAAACAACAACGCTGAAGACCACAACAAATAAATCGACAGCAG ************************************************.....................(((((..((((((....)))))).)).))).................(((....(((.....(((((.....)))))..(((......................))).....)))......))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M025 embryo	SRR902009 testis	M024 male body
..............................................TCTGTACTTAACGACGATGA........................................................................................................................................................................................	20	2	1	1.00	1	1	0	0	0
.................................................................................................................................................................CCAAAAGACAACGACTGAAAAGGCC................................................................	25	0	4	0.25	1	0	1	0	0
............................................................................................................................................................................................................GAGAAAACAACAACGCTGAAGACCA.....................	25	0	6	0.17	1	0	0	1	0
.....................................................................................................................................................................................................AACAACTGAGAAAACAACAACGCTGAA..........................	27	0	7	0.14	1	0	1	0	0
..................................................................................................................................................................................................................ACAACAACCCTGAAGACC......................	18	1	15	0.07	1	0	1	0	0
..............................................................................................................................................................AAACTAAAAGACAACTACTGAAA.....................................................................	23	3	17	0.06	1	1	0	0	0
...........................................................................................................................................................................ACGACTGCCAAGGCCACGAC...........................................................	20	3	20	0.05	1	0	0	0	1

CTACGGTTTGTTCCTCTCCTGCCCCAAGGACGGGGGTTGAAGTACAAGACATGAATTGCTGCTATATTACTTGGCACTTAACGTACTCACGTCATCGACCATTGACTCTTTTATTGTTGAGGTTTCCGTTGGTGACAATTTAGCTGTCGTGTCTGTTTTTGGGTTTTCTGTTGCTGACTTTTCCGGTGTTGTCTCGGTTGTTGACTCTTTTGTTGTTGCGACTTCTGGTGTTGTTTATTTAGCTGTCGTC ************************************************.....................(((((..((((((....)))))).)).))).................(((....(((.....(((((.....)))))..(((......................))).....)))......))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
........................................................................................................................................................................................GGTGTTGTCTCGGTTGTTGACTC...........................................	23	0	3	0.67	2	2	0	0	0
...................................GTGGAAGTATAAGAGATGAAT..................................................................................................................................................................................................	21	3	2	0.50	1	1	0	0	0
....................................................................................................................................................................................TTCCGGCGTTGTCTCGGCTGTTGACTCTT.........................................	29	2	3	0.33	1	1	0	0	0
....................................................................................................................................................................................TTCCGGTGTTGTCTCGGTTGTTGACTCTT.........................................	29	0	3	0.33	1	1	0	0	0
.......................................................................................................................................................................CTGTTGCTGACTTTTCCGGTGTTGTCT........................................................	27	0	4	0.25	1	1	0	0	0
.......................................................................................................................................................................................................................ATGCGACTTTTGGTGTTTTTTAT............	23	3	4	0.25	1	0	1	0	0
..................................GGTTGAAGTACAAGAGCTCA....................................................................................................................................................................................................	20	3	9	0.22	2	0	0	2	0
.............................ACGGGGGTTCAAGTGCAAGAC........................................................................................................................................................................................................	21	2	5	0.20	1	1	0	0	0
..................................................................................................................................................................................................CGGTTGTTGACTCTTTTGTTGTTGCGA.............................	27	0	6	0.17	1	1	0	0	0
.........................................................GCGACTATATTACTTGG................................................................................................................................................................................	17	2	12	0.08	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:9600002-9600251 -	dsi_17883	GATGCCA------------A------ACAAGGAGA---------------GGACGGGGTTCCTGCCCCCAACTTCATGTTCTGTA----------------CTT-AACGACGATATAATGAACCGTGA-----------------A------------------------------------------------TTGCATGAGT--------------------------------GCAGTAGCTGGTAACTG--------AGAAA------------------------------------------------------ATAACAACTCCAAA---------------------------------------GGCAACCA---------CTGTTAAATCGACAGCACAGACAAAAACCC-------------------------------AAAAG----------A------------------------------CAACGAC---------------------------TGAAA------------AGGCCACAACAG------------------AGCCAACAACTGAGAAAACAACAACGCTGAAGACCACAA------CAAATAAATCGACAGCAG--
droSec2	scaffold_3:5348165-5348331 -		CACAAGA------------A------CAGAACCAA---------------CA---------------------------A--------------------------------------------------------------------------------------------------------------CTGA----------A----------------------A---------------------------------------------------------------------------AA---------------ATAACAACGCTGAA---------------------------------------GACCACCA---------CAAATAAATCGACAGCACAGACAACAACCC-------------------------------AAAAG----------A------------------------------CAACGAC---------------------------TGAAA------------AGGCAAAAACAG------------------AGCCAACAACTGAGAAAACAACAACGCTGAAGACCACCA------CAAATAAATCAACAGCAA--
dm3	chr2L:9902122-9902380 -		GCAACCA------------A-------------GA---------------AGACAACGCATGAACCCACAACTCAGAAATCAACAACTTTAAGGATTACTGAAGAACCAACTACTCGGAAATCATCAAC-----CGC---------------------------------------------------------AAAG--------------------------------------------------------------------ACTACTAG---------AG------------------AGCCAAC------------------------------------------TACAAAGAGGG---------------------------------AAACA-------------------ACAGAAAGAACAACAAAGGAGCCAAGCACCAGTAAG----------A------------------------------CAACAAC---------------------------CCATGAGACAACAGCAGAACCAGCAACCA------------------AAAAGACAACGCATGAACCCACAACTCAGAAATCAACAA------CTTTAAGGATTACTGAAG--
droEre2	scaffold_1339:2785-3023 -		GAAACCA------------A------CCACTGGTA---------------GG---------------------------GCCACCACCATTAAATCCACCGCAGAACCGACCACCCAAAAGACCACTAC-----TGG---------------------------------------------------------TAAG--------------------------------------------------------------------ACCACCAA---------AG------------------AGCCAAC------------------------------------------CACTGAGAAAACAACACAGAAGACAACCA---------CCATTAAATCGACAGCAGAGCCGACAACCC-------------------------------AAAAG----------A------------------------------CAACTAC---------------------------TGAAA------------AGACAACAAAAG------------------AGCCAAGCTCTGAGAAAACAACAACACTGAAGACAACCA------CCATTAAATCGACAGCAG--
droYak3	v2_chrUn_3736:777-1054 +		GAAGACA------------A------CAACTAAAA---------------GGACGACACATGAACCCACAACTGAGGGATCAACCACTTTAAGGACTACTGCAGAACCAACAACACGTAAGACATCTAC-----TAC---------------------------------------------------------AAAGACTAGT--------------------------------ACAGA-GCCA--------------------------------------------------------------AC------------------------------------------TACGGAGG------------------------------------AAACA-------------------AGTGAAAAGACAACTCGTGAGCCAACCACTGAGAAA----------A---------CAACGACCCATAAGACAAC---------AGTAGAACCTAGGAC------------CAAGA------------AGACAACAACTA------------------AAAGGACGACACATGAACCCACAACTAAGGGATCAACCA------CTTTAAGGACTACTGCAG--
droEug1	scf7180000409554:5011967-5012207 +		GAG-CCT------------A------CCACCGAGAAAGCAACAACTCAAAAG---------------------------ACGTCGACCACTGAAACTAAAACAGAACCAACA---------------------------------A--------------------------------------------CTGCAAAGATAACA--------------------------------ACAGA-GCCC--------------------------------------------------------------TCTACCGAGAAAACAACTACTCTAAA---------------------------------------GACCTCAA---------CAGCAAAAACAACAAGGAAACCAACAACTC-------------------------------AGAAG----------A------------------------------AAACCAC---------------------------TGTAA------------AGCCAACAACAG------------------AGCCTACCACCGAGAAAACAACAACTCATAAGAAAACCA------CTGTAAAGGCAACAACAG--
droBia1	scf7180000301468:923-1165 -		GAG-CCA------------A------CCCCACAGA---------------AG---------------------------GCGACTACCGTAACAACTACAGCAGAACCAACCACTGAGAACTCCACAAC-----T-------------------------------------------------------------------------------------------------------------CAGAAA---CAACTCAA-----TCTACAAC---------AG------------------AGCCAAC------------------------------------------GACAGCAAGGACAA---------------CAGAGCCTACTACTGAAACATCTACACAGCCAACAACCG-------------------------------CAAAG----------G------------------------------CAATTAC---------------------------TGAAA------------CGTCAACCACCG---------------CAAAGACAACTACTGCAATATCAACAACCGAAAAGTCTAGTA------CAGAACCAACAACCGCTA--
droTak1	scf7180000415857:5599-5816 -		GATACCC------------G------TT-----------------------GGCTATGATTGTGCCAATGGTTTGGAGTTCAGTC----------------------CGACG-----------------------GA---ACTGATTTGCATGGATCCAGAATTAGCCGGTTGTAGTCCGAAAATAACCACTCC----------T----------------------G---------------------------------------------------------------------------GGCTGACAACTGTGACCACAGAAACTTCGACTA------------------------------------------TTA---------CAA--------------------------------------------------------------------------------------------------------------C---------------------------TGAAT------------CAACAACACCAA---------------------CGACAACAACACTTTCAACAACGCCAATGACAACCA------CCACAGAATCGACAACAG--
droEle1	scf7180000491268:944933-945084 +		AACAACT------------C------CCATGCCAA---------------CT---------------------------A--------------------------------------------------------------------------------------------------------------CCAC----------T----------------------G---------------------------------------------------------------------------AATCAACTACCGTTACAACAACACCTCAGACAA------------------------------------------CTT---------CTA----------------------------------------------------------CAGAA----------T------------------------------CAACAAC---------------------------AGACT------------CAACAACTCCCA------------------TGCCAACTACCACGGAATCAACAACTCCGAAGACAACTA------CAACAGACTCAACAACAG--
droRho1	scf7180000778085:3969-4203 +		GAG-CCA------------A------CCACCCAGA---------------AG---------------------------ACGTCCACGACAAAAACTACCACGGAGCAAACTACCG-------------------------------------------------------------------------------------------------------------------------------------------------ATAGA---ACAAC---------GAAACCAATTACTACACCGGAGCCAACGACTTACAAGACAACAACTTTGAAATCTACAACAGAGCCAACAAC---------------------------------------------------CCGAAAGACGACTC-------------------------------ATAAG----------A------------------------------CAACAAC---------------------------CTTGA------------AATCTACAACAG------------------AACCAACAACCCGAAAG---ACGACTCATAAGACAACAA------CCTTTAAATCTACAACAG--
droFic1	scf7180000454044:87125-87261 -		AACAACT------------A------CAGAAACAA---------------CA---------------------------A--------------------------------------------------------------------------------------------------------------CAAC----------G----------------------G---------------------------------------------------------------------------AAGCAACTACCGAAACAACAACAA----------------------------------------------------------------------------------------------------------------------------CCGAG----------G------------------------------CAACTAC---------------------------AGAAA------------CAACAACAACGG------------------AGGCAACTACCGAATCAACAACAACCGAGGCAACTACTG------AAACAACAACAACAACGG--
droKik1	scf7180000302706:1110139-1110275 +		GACAACA------------A------CAACTTCTA---------------CA---------------------------A--------------------------------------------------------------------------------------------------------------CAAC----------A----------------------G---------------------------------------------------------------------------AACCAACAACAACTT---------------------------------------------------------------------------------------------CTACAACAA-------------------------------CAGAA----------C------------------------------CAACAAC---------------------------AACTT------------CTACTACAACAG------------------AACCAACAACAGAACCAACAACAACAACAGAACCAACAA------CAACTACTACTACAACAG--
droAna3	scaffold_12929:1317312-1317477 -		AACAAAGAGGGAAACCACTA------CAGTGACAA------------------------------------------------------------C---------------------------------TACC--------------------------------------------------------AC-------------CGAAAAGCCAAAAACTACAACGC----------------------------------------------C---------AA------------------------------------------AACCAACAA------------------------------------------CTA---------CAA----------------------------------------------------------CTGAA----------AAACCAACAACTACGACACTGAAAACGAC---------------------------------------------------------------------------------------AAAAACTCCCAAGCCAACAACGACAACGACTACGA------CTCCTAAACCAACCACTACG
droBip1	scf7180000396434:620968-621122 +		AACAAAA------------A------TTACAACAA---------------CA---------------------------A---------------C---------------------------------AAAC-A----------------------CAAAA---------------------------ATTAC----------A----------------------A---------------------------------AA---ACAACAAC---------AA---------------------------------------------------------------------------------------------------------------------AAACAACAACAACAA----------------------------------CAAAA----------ACAA---------------------------CAACAAT---------------------------TACAA------------CAACAACAACAA------------------AATTTACAACAAAAATTACAACAACGACAAAAATTACAA------CAAAAAAAACAACAACAA--
dp5	XR_group8:4884832-4885070 +		GACTACA------------A------CAGTGAAGA---------------CG---------------------------A------------------CTCCAGAGCCGACAACACCTAAAACAACAAC---CGTGGAGAGTACAA--------------------------------------------CGAAAAAGACGACT--------------------------------CCTGA-ACCAACAACCG--------TGGAG------------------------------------------------------ACTACAACAGTAAA---------------------------------------GA---CGA---------CTC------------CTGAGCCGACAACTC-------------------------------CGAAA----------A------------------------------TAACTACAGTAAAGACTACCAC------------AGTGA------------AGACGACTCCAG------------------AGCCGACAACTCCGAAAACAACAACCGTGGAGACCACAA------CGGTCAAGACGACTCCAG--
droPer2	scaffold_1:3277071-3277221 -		AACTACA------------A------CAACAAGAA---------------AA---------------------------G--CCTACAACAACA-----------------------------------------------------------------------------------------------ACCAC----------A-------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGGA------------------------------------CAACAA---------CAA----------------------------------CACGAAGACTTTACTA------------------------------CAACGAC---------------------------TAAAA------------GAACAACAACAA------------------CACAAAAAACTACAACAACAACAACACCAAAAACTACAA------CAACAGCCACTACGCCAA--
droWil2	scf2_1100000004949:1894387-1894610 -		CAACAAC--G---------ACAACTACTACAACAA---------------CT---------------ACAAC------------------------------------TAC------------------GACG--------------------------------------------------------ACGAC----------A----------------------ACAACAACTTGCAA-ACCAACAACAA--------CGACAACTACGAC---------GA------------------CGACAAC------------------------------------------AA------------------------CAA---------CCTGTAAACCAACAATAACAACTACAACTA-------------------------------CGACA----------A------------------------------CAACTAC------------AACTACGACAACAACTA----CACT------------ACGA------------------------CAACAACTACAACTACAACTACGACAACGACGACCACAACACCTTCCAAACCAACAACAA--
droVir3	scaffold_13049:21088415-21088653 -		GACATCA------------A------CCACAACTA---------------CG---------------------------ACTACAACGACAACAACTACAACGACTTGCAGCACAACGACATCAAC---------------------------------------------------------------------------------------------CACAACAA--------------------------CGACTACA-----ACTACTAC---------GA------------------CAACTAC------------------------------------------CACAACTACGACAA---------------CAACGACTACAA-------------------------------------------------------------CT----------A------------------------------CAACGAC---------------------------TTGTAGCACAACGACATCAACCACAACTACGACTACAACTACAACGACTTGTAGCACAACAACATCAACCACAACAACGACAAAAA------CCACAACAACGACAACAA--
droMoj3	scaffold_6540:24451936-24452144 -		AACGACG------------A------CATCAACAA---------------CA---------------------------A------------------CGACATCAACAAC------------------GACA--------------------------------------------------------AC-------------AACAACTACAACAACCACCACTT--------------------------CGACAACA-----ACAACTACTACAACAACAA------------------CAACC--------------------------------------------------------------------------------------------------------------------------------------------------------------A---------CAACAACCACTACAACAACAACAACACC---------------------------TTGTACGACAACGACAACAACCACGACAA------------------CGACAACAACCACGACAACAACCACGACAACAACCACGA------CAACAACCACGACAACAA--
droGri2	scaffold_14906:9155430-9155578 -		AACTACA------------A------CAAAAATAA---------------AA---------------------------A---------------------CAGAATCATC--------------------------------------------------------------------------------AGC----------A----------------------G---------------------------------------------------------------------------AAA------------------------------------------------------------------------------------------CAACAAGAGCAGAAACAACAACAG-------------------------------CAGAA----------A------------------------------CAACAAC---------------------------AGCAG------------AAACAACAACAG------------------CAGAAACAACAGCAGAAACAACAACAGCAGAAACATCAA------CAGCAGAAACAACAGCAG--

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GATGCCA------------A------ACAAGGAGA---------------GGACGGGGTTCCTGCCCCCAACTTCATGTTCTGTA----------------CTT-AACGACGATATAATGAACCGTGA-----------------A------------------------------------------------TTGCATGAGT--------------------------------GCAGTAGCTGGTAACTG--------AGAAA------------------------------------------------------ATAACAACTCCAAA---------------------------------------GGCAACCA---------CTGTTAAATCGACAGCACAGACAAAAACCC-------------------------------AAAAG----------A------------------------------CAACGAC---------------------------TGAAA------------AGGCCACAACAG------------------AGCCAACAACTGAGAAAACAACAACGCTGAAGACCACAA------CAAATAAATCGACAGCAG--	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................TCTGTA----------------CTT-AACGACGATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................CC-------------------------------AAAAG----------A------------------------------CAACGAC---------------------------TGAAA------------AGGCC..........................................................................................	25	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAACAACAACGCTGAAGACCA.............................	25	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACTGAGAAAACAACAACGCTGAA..................................	27	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CACAAGA------------A------CAGAACCAA---------------CA---------------------------A--------------------------------------------------------------------------------------------------------------CTGA----------A----------------------A---------------------------------------------------------------------------AA---------------ATAACAACGCTGAA---------------------------------------GACCACCA---------CAAATAAATCGACAGCACAGACAACAACCC-------------------------------AAAAG----------A------------------------------CAACGAC---------------------------TGAAA------------AGGCAAAAACAG------------------AGCCAACAACTGAGAAAACAACAACGCTGAAGACCACCA------CAAATAAATCAACAGCAA--	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGAAGACCACCA------CAAA................	19	3	0.33	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................CGCTGAA---------------------------------------GACCACCA---------CAAA.........................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	1	0

dm3

GCAACCA------------A-------------GA---------------AGACAACGCATGAACCCACAACTCAGAAATCAACAACTTTAAGGATTACTGAAGAACCAACTACTCGGAAATCATCAAC-----CGC---------------------------------------------------------AAAG--------------------------------------------------------------------ACTACTAG---------AG------------------AGCCAAC------------------------------------------TACAAAGAGGG---------------------------------AAACA-------------------ACAGAAAGAACAACAAAGGAGCCAAGCACCAGTAAG----------A------------------------------CAACAAC---------------------------CCATGAGACAACAGCAGAACCAGCAACCA------------------AAAAGACAACGCATGAACCCACAACTCAGAAATCAACAA------CTTTAAGGATTACTGAAG--	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................GA---------------AGACAACGCATGAACCCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................CTAG---------AG------------------AGCCAAC------------------------------------------TACAAAGAGGG---------------------------------AAA....................................................................................................................................................................................................................................................	27	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AGCCAAC------------------------------------------TACAAAGAGGG---------------------------------A......................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................ACTAG---------AG------------------AGCCAAC------------------------------------------TACAAAGAGGG---------------------------------AA.....................................................................................................................................................................................................................................................	27	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GAAACCA------------A------CCACTGGTA---------------GG---------------------------GCCACCACCATTAAATCCACCGCAGAACCGACCACCCAAAAGACCACTAC-----TGG---------------------------------------------------------TAAG--------------------------------------------------------------------ACCACCAA---------AG------------------AGCCAAC------------------------------------------CACTGAGAAAACAACACAGAAGACAACCA---------CCATTAAATCGACAGCAGAGCCGACAACCC-------------------------------AAAAG----------A------------------------------CAACTAC---------------------------TGAAA------------AGACAACAAAAG------------------AGCCAAGCTCTGAGAAAACAACAACACTGAAGACAACCA------CCATTAAATCGACAGCAG--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

GAAGACA------------A------CAACTAAAA---------------GGACGACACATGAACCCACAACTGAGGGATCAACCACTTTAAGGACTACTGCAGAACCAACAACACGTAAGACATCTAC-----TAC---------------------------------------------------------AAAGACTAGT--------------------------------ACAGA-GCCA--------------------------------------------------------------AC------------------------------------------TACGGAGG------------------------------------AAACA-------------------AGTGAAAAGACAACTCGTGAGCCAACCACTGAGAAA----------A---------CAACGACCCATAAGACAAC---------AGTAGAACCTAGGAC------------CAAGA------------AGACAACAACTA------------------AAAGGACGACACATGAACCCACAACTAAGGGATCAACCA------CTTTAAGGACTACTGCAG--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....ACA------------A------CAACTAAAA---------------GGACGACACATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	8.33	25	0	1	0	0	0	0	0	0	0	0	24
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACTA------------------AAAGGACGACACATG..................................................	25	3	8.33	25	0	1	0	0	0	0	0	0	0	0	24
...............................................................................TCAACCACTTTAAGGACTACTGCAGAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	2	6.50	13	0	0	0	0	0	0	0	0	0	0	13
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAC---------AGTAGAACCTAGGAC------------CAAG............................................................................................................	25	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
..................................................................................................................ACGTAAGACATCTAC-----TAC---------------------------------------------------------AAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	3.50	7	0	7	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAC---------AGTAGAACCTAGGAC------------CAAGA------------...............................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------AAAGGACGACACATGAACCCACAAC........................................	27	4	1.25	5	0	5	0	0	0	0	0	0	0	0	0
..............................TAAAA---------------GGACGACACATGAACCCACAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	4	1.25	5	0	5	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAACTCGTGAGCCAACCA...................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAC---------AGTAGAACCTAGGAC------------................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAGACAAC---------AGTAGAACCTAGGAC------------C...............................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC---------AGTAGAACCTAGGAC------------CAAGA------------...............................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................TGAACCCACAACTGAGGGATCAACCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................GACACATGAACCCACAACTGAGGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATAAGACAAC---------AGTAGAACCTAGGAC------------................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAGT--------------------------------ACAGA-GCCA--------------------------------------------------------------AC------------------------------------------TACGGAG............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................AGA-GCCA--------------------------------------------------------------AC------------------------------------------TACGGAGG------------------------------------AAACA-------------------AG.............................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAC---------AGTAGAACCTAGGAC------------CA..............................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................GACACATGAACCCACAACTGAGGGATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TACGGAGG------------------------------------AAACA-------------------AGTGAAAAGACAACT................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................CCACAACTGAGGGATCAACCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AACA-------------------AGTGAAAAGACAACTCGTGAGC.........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TACGGAGG------------------------------------AAACA-------------------AGTGAAAAGACAAC.................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................GACACATGAACCCACAACTGAGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................ACGTAAGACATCTAC-----TAC---------------------------------------------------------AAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAC---------AGTAGAACCTAGGAC------------CAAGA------------A..............................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATAAGACAAC---------AGTAGAACCTAG...............................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................ACTACTGCAGAACCAACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGACAACTCGTGAGCCAA......................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGA------------AGACAACAACTA------------------AAAGGACGA........................................................	26	3	0.67	2	0	0	1	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACATGAACCCACAACTAAGGGATC...............................	28	3	0.67	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTA------------------AAAGGACGACACATGAACC..............................................	26	4	0.50	2	0	1	1	0	0	0	0	0	0	0	0
...................................................................................................................CGTAAGACATCTAC-----TAC---------------------------------------------------------AAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................CAACCACTTTAAGGACTACTGCAGAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCAACCACTGAGAAA----------A---------CAACGACC...............................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................CGTAAGACATCTAC-----TAC---------------------------------------------------------AAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCAACCACTGAGAAA----------A---------CAACGAC................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCA------CTTTAAGGACTACTGCA...	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACCACTGAGAAA----------A---------CAACGAC................................................................................................................................................................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA----------A---------CAACGACCCATAAGACAAC---------...........................................................................................................................................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................ACGTAAGACATCTAC-----TAC---------------------------------------------------------AAAGACTAGT--------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................AACCACTTTAAGGACTACTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................ACGTAAGACATCTAC-----TAC---------------------------------------------------------AAAGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...................A------CAACTAAAA---------------GGACGACACATGAACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.50	2	0	1	1	0	0	0	0	0	0	0	0
..................................................................................ACCACTTTAAGGACTACTGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................TAAGGACTACTGCAGAACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGACATCTAC-----TAC---------------------------------------------------------AAAGACTAGT--------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------CAACGACCCATAAGACAAC---------...........................................................................................................................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCACTGAGAAA----------A---------CAACGACCC..............................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCA------CTTTAAGGACTACTGCAG--	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................TAAGGACTACTGCAGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................TAC-----TAC---------------------------------------------------------AAAGACTAGT--------------------------------ACAGA-GCCA--------------------------------------------------------------AC------------------------------------------...................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....ACA------------A------CAACTAAAA---------------GGACGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACATGAACCCACAACTA......................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
...GACA------------A------CAACTAAAA---------------GGACGACACATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAAA----------A---------CAACGACCCATAAA.........................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................TAC---------------------------------------------------------AAAGACTAGT--------------------------------ACAGA-GCCA--------------------------------------------------------------AC------------------------------------------...................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAACCCACAACTAAGGGATCAACCA------....................	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATGAACCCACAACTAAGGGATC...............................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------------CAAGA------------AGACAACAACTA------------------AAAGGA...........................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACATGAACCCACAACTAAGGGAT................................	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACATGAACCCACAACTAAGGGA.................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACTA------------------AAAGGACGACACATG..................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
....ACA------------A------CAACTAAAA---------------GGACGACACATGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAACAACTA------------------AAAGGACG.........................................................	20	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACTA------------------AAAGGACGACA......................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACACATGAACCCACAACTAAGGGA.................................	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACATGAACCCACAACTAAGGG..................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACATGAACCCACAACTAAGGG..................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
..AGACA------------A------CAACTAAAA---------------GGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACTA------------------AAAGGACGACACATGAAC...............................................	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTA------------------AAAGGACGACACATGAA................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACGACACATGAACCCACAAC........................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------AAAGGACGACACATGAACCCACAACT.......................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..............................TAAAA---------------GGACGACACATGAACCCACAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACAACTAAGGGATCAACCA------CTTTAA..............	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
............................ACTAAAA---------------GGACGACACATGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTA------------------AAAGGACGACACATGAACCCA............................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------AAAGGACGACACATGAACCCACA..........................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACGACACATGAACCCACAACT.......................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...........................AACTAAAA---------------GGACGACACATGAACCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..............................TAAAA---------------GGACGACACATGAACCCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCACAACTAAGGGATC...............................	19	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTA------------------AAAGGACGACACATGAACCC.............................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
............................ACTAAAA---------------GGACGACACATGAACCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.................................AA---------------GGACGACACATGAACCCACAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.................................AA---------------GGACGACACATGAACCCACAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..............................TAAAA---------------GGACGACACATGAACCCACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------AAAGGACGACACATGAACCCACAA.........................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACAACTAAGGGATCAACCA------CT..................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAACTAAGGGATCAACCA------CTT.................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

GAG-CCT------------A------CCACCGAGAAAGCAACAACTCAAAAG---------------------------ACGTCGACCACTGAAACTAAAACAGAACCAACA---------------------------------A--------------------------------------------CTGCAAAGATAACA--------------------------------ACAGA-GCCC--------------------------------------------------------------TCTACCGAGAAAACAACTACTCTAAA---------------------------------------GACCTCAA---------CAGCAAAAACAACAAGGAAACCAACAACTC-------------------------------AGAAG----------A------------------------------AAACCAC---------------------------TGTAA------------AGCCAACAACAG------------------AGCCTACCACCGAGAAAACAACAACTCATAAGAAAACCA------CTGTAAAGGCAACAACAG--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAG-CCA------------A------CCCCACAGA---------------AG---------------------------GCGACTACCGTAACAACTACAGCAGAACCAACCACTGAGAACTCCACAAC-----T-------------------------------------------------------------------------------------------------------------CAGAAA---CAACTCAA-----TCTACAAC---------AG------------------AGCCAAC------------------------------------------GACAGCAAGGACAA---------------CAGAGCCTACTACTGAAACATCTACACAGCCAACAACCG-------------------------------CAAAG----------G------------------------------CAATTAC---------------------------TGAAA------------CGTCAACCACCG---------------CAAAGACAACTACTGCAATATCAACAACCGAAAAGTCTAGTA------CAGAACCAACAACCGCTA--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GATACCC------------G------TT-----------------------GGCTATGATTGTGCCAATGGTTTGGAGTTCAGTC----------------------CGACG-----------------------GA---ACTGATTTGCATGGATCCAGAATTAGCCGGTTGTAGTCCGAAAATAACCACTCC----------T----------------------G---------------------------------------------------------------------------GGCTGACAACTGTGACCACAGAAACTTCGACTA------------------------------------------TTA---------CAA--------------------------------------------------------------------------------------------------------------C---------------------------TGAAT------------CAACAACACCAA---------------------CGACAACAACACTTTCAACAACGCCAATGACAACCA------CCACAGAATCGACAACAG--	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AACAACT------------C------CCATGCCAA---------------CT---------------------------A--------------------------------------------------------------------------------------------------------------CCAC----------T----------------------G---------------------------------------------------------------------------AATCAACTACCGTTACAACAACACCTCAGACAA------------------------------------------CTT---------CTA----------------------------------------------------------CAGAA----------T------------------------------CAACAAC---------------------------AGACT------------CAACAACTCCCA------------------TGCCAACTACCACGGAATCAACAACTCCGAAGACAACTA------CAACAGACTCAACAACAG--	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GAG-CCA------------A------CCACCCAGA---------------AG---------------------------ACGTCCACGACAAAAACTACCACGGAGCAAACTACCG-------------------------------------------------------------------------------------------------------------------------------------------------ATAGA---ACAAC---------GAAACCAATTACTACACCGGAGCCAACGACTTACAAGACAACAACTTTGAAATCTACAACAGAGCCAACAAC---------------------------------------------------CCGAAAGACGACTC-------------------------------ATAAG----------A------------------------------CAACAAC---------------------------CTTGA------------AATCTACAACAG------------------AACCAACAACCCGAAAG---ACGACTCATAAGACAACAA------CCTTTAAATCTACAACAG--	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AACAACT------------A------CAGAAACAA---------------CA---------------------------A--------------------------------------------------------------------------------------------------------------CAAC----------G----------------------G---------------------------------------------------------------------------AAGCAACTACCGAAACAACAACAA----------------------------------------------------------------------------------------------------------------------------CCGAG----------G------------------------------CAACTAC---------------------------AGAAA------------CAACAACAACGG------------------AGGCAACTACCGAATCAACAACAACCGAGGCAACTACTG------AAACAACAACAACAACGG--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GACAACA------------A------CAACTTCTA---------------CA---------------------------A--------------------------------------------------------------------------------------------------------------CAAC----------A----------------------G---------------------------------------------------------------------------AACCAACAACAACTT---------------------------------------------------------------------------------------------CTACAACAA-------------------------------CAGAA----------C------------------------------CAACAAC---------------------------AACTT------------CTACTACAACAG------------------AACCAACAACAGAACCAACAACAACAACAGAACCAACAA------CAACTACTACTACAACAG--	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AACAAAGAGGGAAACCACTA------CAGTGACAA------------------------------------------------------------C---------------------------------TACC--------------------------------------------------------AC-------------CGAAAAGCCAAAAACTACAACGC----------------------------------------------C---------AA------------------------------------------AACCAACAA------------------------------------------CTA---------CAA----------------------------------------------------------CTGAA----------AAACCAACAACTACGACACTGAAAACGAC---------------------------------------------------------------------------------------AAAAACTCCCAAGCCAACAACGACAACGACTACGA------CTCCTAAACCAACCACTACG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

AACAAAA------------A------TTACAACAA---------------CA---------------------------A---------------C---------------------------------AAAC-A----------------------CAAAA---------------------------ATTAC----------A----------------------A---------------------------------AA---ACAACAAC---------AA---------------------------------------------------------------------------------------------------------------------AAACAACAACAACAA----------------------------------CAAAA----------ACAA---------------------------CAACAAT---------------------------TACAA------------CAACAACAACAA------------------AATTTACAACAAAAATTACAACAACGACAAAAATTACAA------CAAAAAAAACAACAACAA--	Size	Hit Count	Total Norm	Total
No Reads

dp5

GACTACA------------A------CAGTGAAGA---------------CG---------------------------A------------------CTCCAGAGCCGACAACACCTAAAACAACAAC---CGTGGAGAGTACAA--------------------------------------------CGAAAAAGACGACT--------------------------------CCTGA-ACCAACAACCG--------TGGAG------------------------------------------------------ACTACAACAGTAAA---------------------------------------GA---CGA---------CTC------------CTGAGCCGACAACTC-------------------------------CGAAA----------A------------------------------TAACTACAGTAAAGACTACCAC------------AGTGA------------AGACGACTCCAG------------------AGCCGACAACTCCGAAAACAACAACCGTGGAGACCACAA------CGGTCAAGACGACTCCAG--	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................................................................................AAGACGACT--------------------------------CCTGA-ACCAACAACCG--------..............................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	1	0	0	0	0	0	0	2	0
GACTACA------------A------CAGTGAAGA---------------CG---------------------------A------------------CTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	1.50	3	0	2	0	0	0	0	1	0	0	0
GACTACA------------A------CAGTGAAGA---------------CG---------------------------A------------------CTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	2	0	0
.................................................................................................................................................................................................AAAAGACGACT--------------------------------CCTGA-ACCAACAACCG--------..............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................AGACGACT--------------------------------CCTGA-ACCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTCCGAAAACAACAACCGT.....................................	23	6	0.83	5	0	4	0	0	0	0	1	0	0	0
........................................................................................................................AACAACAAC---CGTGGAGAGTACAA--------------------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	1	0	0
.............................TGAAGA---------------CG---------------------------A------------------CTCCAGAGCCGACAACAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TACAACAGTAAA---------------------------------------GA---CGA---------CTC------------CTGAGC........................................................................................................................................................................................................................................	26	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGGAG------------------------------------------------------ACTACAACAGTAAA---------------------------------------GA---CGA---------CT...........................................................................................................................................................................................................................................................	26	5	0.40	2	0	0	0	0	0	0	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTCCGAAAACAACAACCGTGGA..................................	26	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAC------------AGTGA------------AGACGACTCCAG------------------AGC..............................................................	26	9	0.33	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGAAAACAACAACCGTGGA..................................	23	6	0.33	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTCCGAAAACAACAACCGTGG...................................	24	6	0.33	2	0	1	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAC------------AGTGA------------AGACGACTCCAG------------------.................................................................	23	9	0.22	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................A---------------------------------------GA---CGA---------CTC------------CTGAGCCGA.....................................................................................................................................................................................................................................	18	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGACTACCAC------------AGTGA------------AGACGACT.......................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGGAG------------------------------------------------------ACTACAACAGTAAA---------------------------------------GA---CGA---------C............................................................................................................................................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................ACAACAGTAAA---------------------------------------GA---CGA---------CTC------------CT............................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TACAACAGTAAA---------------------------------------GA---CGA---------CTC------------CTGAGCC.......................................................................................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AGTAAA---------------------------------------GA---CGA---------CTC------------CTGAGCCG......................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................G--------TGGAG------------------------------------------------------ACTACAACAGTAAA---------------------------------------GA---CG.......................................................................................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GTAAA---------------------------------------GA---CGA---------CTC------------CTGAGCCGAC....................................................................................................................................................................................................................................	23	5	0.20	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGACTACCAC------------AGTGA------------AGACGACT.......................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGAAAACAACAACCGTGG...................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................ACAACAGTAAA---------------------------------------GA---CGA---------CTC------------C.............................................................................................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTCCGAAAACAACAACCGTGGA..................................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGAAAACAACAACCGTGGAGA................................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAG------------------AGCCGACAACTCCGAAAACA.............................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTACCAC------------AGTGA------------AGACGACTCCAG------------------.................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAC------------AGTGA------------AGACGACTCCAG------------------AGC..............................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTACCAC------------AGTGA------------AGACGACT.......................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTACCAC------------AGTGA------------AGACGACTC......................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAC------------AGTGA------------AGACGACTCCAG------------------.................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAC------------AGTGA------------AGACGACTCC.....................................................................................	21	9	0.11	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AGACGACTCCAG------------------AGCCGACAACTCCGA..................................................	28	9	0.11	1	0	1	0	0	0	0	0	0	0	0
............................GTGAAGA---------------CG---------------------------A------------------CTCCAGAGCCGACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGA------------AGACGACTCCAG------------------AGCCGACAAC.......................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...........................AGTGAAGA---------------CG---------------------------A------------------CTCCAGAGCCGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGA------------AGACGACTCCAG------------------AGCCGAC..........................................................	24	11	0.09	1	0	0	0	0	0	0	0	1	0	0

droPer2

AACTACA------------A------CAACAAGAA---------------AA---------------------------G--CCTACAACAACA-----------------------------------------------------------------------------------------------ACCAC----------A-------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGGA------------------------------------CAACAA---------CAA----------------------------------CACGAAGACTTTACTA------------------------------CAACGAC---------------------------TAAAA------------GAACAACAACAA------------------CACAAAAAACTACAACAACAACAACACCAAAAACTACAA------CAACAGCCACTACGCCAA--	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

CAACAAC--G---------ACAACTACTACAACAA---------------CT---------------ACAAC------------------------------------TAC------------------GACG--------------------------------------------------------ACGAC----------A----------------------ACAACAACTTGCAA-ACCAACAACAA--------CGACAACTACGAC---------GA------------------CGACAAC------------------------------------------AA------------------------CAA---------CCTGTAAACCAACAATAACAACTACAACTA-------------------------------CGACA----------A------------------------------CAACTAC------------AACTACGACAACAACTA----CACT------------ACGA------------------------CAACAACTACAACTACAACTACGACAACGACGACCACAACACCTTCCAAACCAACAACAA--	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................................CAACAA--------CGACAACTACGAC---------CT------------------....................................................................................................................................................................................................................................................................................................................................................	21	18	0.06	1	0	1	0	0	0

droVir3

GACATCA------------A------CCACAACTA---------------CG---------------------------ACTACAACGACAACAACTACAACGACTTGCAGCACAACGACATCAAC---------------------------------------------------------------------------------------------CACAACAA--------------------------CGACTACA-----ACTACTAC---------GA------------------CAACTAC------------------------------------------CACAACTACGACAA---------------CAACGACTACAA-------------------------------------------------------------CT----------A------------------------------CAACGAC---------------------------TTGTAGCACAACGACATCAACCACAACTACGACTACAACTACAACGACTTGTAGCACAACAACATCAACCACAACAACGACAAAAA------CCACAACAACGACAACAA--	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................TACAACGACTTGCAGCACAACGACATCAAC---------------------------------------------------------------------------------------------CACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................	37	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GACTACA-----ACTACTAC---------GA------------------CAACTAC------------------------------------------CACA...............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------A------------------------------CAACGAC---------------------------TTGTAGCACAACGACATCAACCACA.......................................................................................	34	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACAACGACATCAACCACAACTACGAC...............................................................................	29	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ACTACGACAA---------------CAACGACTACAA-------------------------------------------------------------CC----------.................................................................................................................................................................................	24	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---------------------------TTGTAGCACAACGACATCAAC...........................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................AGCACAACGACATCAAC---------------------------------------------------------------------------------------------CAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACAACGACATCAACCAC........................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................CAAC---------------------------------------------------------------------------------------------CACAACAA--------------------------CGACTACA-----AC.......................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CGACAA---------------CAACGACTACAA-------------------------------------------------------------C............................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AACGACG------------A------CATCAACAA---------------CA---------------------------A------------------CGACATCAACAAC------------------GACA--------------------------------------------------------AC-------------AACAACTACAACAACCACCACTT--------------------------CGACAACA-----ACAACTACTACAACAACAA------------------CAACC--------------------------------------------------------------------------------------------------------------------------------------------------------------A---------CAACAACCACTACAACAACAACAACACC---------------------------TTGTACGACAACGACAACAACCACGACAA------------------CGACAACAACCACGACAACAACCACGACAACAACCACGA------CAACAACCACGACAACAA--	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................AACAACTACAACAACCACCACTT--------------------------CGAC..................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................................CTT--------------------------CGACAACA-----ACAACTACTAC..............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................TACAACAACCACCACTT--------------------------CGAC..................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................A------------------CGACATCAACAAC------------------GACA--------------------------------------------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................CACTT--------------------------CGACAACA-----ACAACTACTACAAC...........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.................................AA---------------CA---------------------------A------------------CGACATCAACAAC------------------GACA--------------------------------------------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................GACA--------------------------------------------------------AC-------------AACAACTACAACAACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............................................................................A------------------CGACATCAACAAC------------------GACA--------------------------------------------------------AC-------------AACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACC---------------------------TTGTACGACAACGACAACAACCA.........................................................................................	28	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................AACAA------------------CAACC--------------------------------------------------------------------------------------------------------------------------------------------------------------A---------CAACAACCACTACAAC.......................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CAACC--------------------------------------------------------------------------------------------------------------------------------------------------------------A---------CAACAACCACTACAACAACAAC.................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................ACAACAACAA------------------CAACC--------------------------------------------------------------------------------------------------------------------------------------------------------------A---------CAACAACCACTA...........................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..................................................CA---------------------------A------------------CGACATCAACAAC------------------GACA--------------------------------------------------------AC-------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................ACAACTACTACAACAACAA------------------CAACC--------------------------------------------------------------------------------------------------------------------------------------------------------------A---------CAAC...................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACACC---------------------------TTGTACGACAAC....................................................................................................	25	2	0.50	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................CTACTACAACAACAA------------------CAACC--------------------------------------------------------------------------------------------------------------------------------------------------------------A---------CAA....................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCACTACAACAACAACAACACC---------------------------TT..............................................................................................................	27	2	0.50	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACACC---------------------------TTGTACGACAACGACAA...............................................................................................	29	2	0.50	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGACAACAACCACGA------CAACAACCA...........	27	3	0.33	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACCACGACAA------------------CGACAACAAC.......................................................	25	3	0.33	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACGACAA------------------CGACAACA.........................................................	19	3	0.33	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGACAACAACCACGACAACAACCA.............................	27	3	0.33	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACCACGACAA------------------CGACAAC..........................................................	24	3	0.33	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAACAACCACGACAA------------------CGACAAC..........................................................	25	3	0.33	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACCACGA------CAACAACCACGA........	26	7	0.29	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACCACGACAACAACCACGA------....................	26	7	0.29	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACCACGACAACAACCACGA......................................	26	7	0.29	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCACGACAACAACCACGA......................................	21	8	0.25	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGACAACAACCACGA------CAAC................	21	8	0.25	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGACAACAACCACGACAAC..................................	21	8	0.25	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCACGA------CAACAACCACGA........	21	8	0.25	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGA------CAACAACCACGACAAC....	21	8	0.25	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCACGACAACAACCACGA------....................	21	8	0.25	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAA------------------CGACAACAACCACGAC.................................................	23	5	0.20	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAA------------------CGACAACAACCACGA..................................................	20	5	0.20	1	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAACGACAACAACCACG.......................................................................................	21	5	0.20	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAACGACAACAACCACGAC.....................................................................................	23	5	0.20	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGACAACAACCACGA......................................................................................	20	5	0.20	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAA------------------CGACAACAACCACG...................................................	21	5	0.20	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAA------------------CGACAACAACCACGACAA...............................................	23	5	0.20	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGACAACAACCACGACAA------------------.................................................................	23	5	0.20	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------------------CGACAACAACCACGACAACA.............................................	23	6	0.17	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------CGACAACAACCACGACAACA.............................................	22	6	0.17	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAACAACCACGACAA------------------.................................................................	21	7	0.14	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------CGACAACAACCACGACAAC..............................................	21	7	0.14	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACCACGACAACAACCACGA------C...................	27	7	0.14	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACCACGACAACAACCACGA------CAA.................	29	7	0.14	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACGACAACAACCACGACAACA.................................	24	7	0.14	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACCACGACAACAACCACGAC.....................................	27	7	0.14	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACGA------CAACAACCACGACAACA...	24	7	0.14	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACCACGACAACAACCAC........................................	24	7	0.14	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACCACGA------CAACAACCACGACAA.....	29	7	0.14	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------------------CGACAACAACCACGACAA...............................................	21	7	0.14	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACCACGA------CAACAACCAC..........	24	7	0.14	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACGACAACAACCACGA------CAACA...............	24	7	0.14	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACAACAACCACGACAA------------------C................................................................	21	7	0.14	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACCACGA------CAACAACCACGAC.......	27	7	0.14	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACCACGACAACAACCAC............................	24	7	0.14	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACCACGACAACAACCACGACAA...................................	29	7	0.14	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------------------CGACAACAACCACGAC.................................................	19	8	0.13	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACCACGACAACAACCACGA......................................	23	8	0.13	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACCACGACAACAACCA.............................	21	8	0.13	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACCACGACAACAACCACGA------....................	24	8	0.13	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACGA------CAACAACCACGAC.......	21	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACCACGACAACAACCA.........................................	21	8	0.13	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACGA------CAACAACCACGA........	20	8	0.13	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACCACGACAACAACCACGA------....................	23	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACCACGACAACAACCACGA......................................	24	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACGACAACAACCACGA------C...................	21	8	0.13	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACCACGA------CAACAACCACGA........	24	8	0.13	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACCACGA------CAACAACCA...........	21	8	0.13	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACCACGA------CAACAACCACGA........	23	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACGACAACAACCACGA------....................	20	8	0.13	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACGACAACAACCACGA......................................	20	8	0.13	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACGACAACAACCACGAC.....................................	21	8	0.13	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAACAACCACGAC.....................................................................................	19	8	0.13	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................CA-----ACAACTACTACAACAACAA------------------C...................................................................................................................................................................................................................................................................................................................................................	22	18	0.06	1	1	0	0	0	0	0
........................................................................................................CAACAAC------------------GACA--------------------------------------------------------AC-------------AACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0

droGri2

AACTACA------------A------CAAAAATAA---------------AA---------------------------A---------------------CAGAATCATC--------------------------------------------------------------------------------AGC----------A----------------------G---------------------------------------------------------------------------AAA------------------------------------------------------------------------------------------CAACAAGAGCAGAAACAACAACAG-------------------------------CAGAA----------A------------------------------CAACAAC---------------------------AGCAG------------AAACAACAACAG------------------CAGAAACAACAGCAGAAACAACAACAGCAGAAACATCAA------CAGCAGAAACAACAGCAG--	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_17883

2l:9600052-9600201 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-15.6	-15.2	-15.2