ID:

dsi_17870

 Coordinate:

3r:10166007-10166062 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10165736_10166006_+]; CDS [3r_10165736_10166006_+]; CDS [3r_10166063_10166439_+]; exon [3r_10166063_10166439_+]; intron [3r_10166007_10166062_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------##################################################
CTTTTTTGTTCGCGACATCTGGTTTTTTGTGGTACGGTTCCTGATCCATAGTAAGTGAAAAATTTAAAGAGTAACTTACGCGTAACCTAATGCTACCTGATTTCAGCTAAGTTCATCCGCGTCCAAATGGCTGCTCTGACATTTCTGGAACTCTTG
**************************************************..............................................(((....)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
 M024
male body
...............................................................................................................................TGGCTGCTCTGACATTTCTGGAACTC... 26 0 1 5.00 5 3 2 0 0 0 0 0 0 0
.................TCTGGTTTTTTGTGGTACGGTTCCTGA................................................................................................................ 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0
....TTTGTTCGCGACATCTGGTTTTTTGT.............................................................................................................................. 26 0 1 2.00 2 1 0 0 0 0 1 0 0 0
........................................................................................................TACTAAGTTCATCCGCGTCCAAATGG.......................... 26 2 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................TGGCTGCTCTGACATTTCTGGA....... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................TGAAAGACTAACTTACGCGGAACC..................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 0 1 0
...................TGGTTTTTTGTGGTACGGTTTCTGA................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................TGGCTGCTCTGACATTTCTGGAACT.... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................TTTTTTGTGGTACGGTTCCTGATC.............................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................GTCCAAATGGCTGCTCTGACATTTC........... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................TGGCTGCTCTGACATTTCTGGAACTCT.. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................TGGCTGCTCTGACATTTCTGGAA...... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................ACTAAGTTCATCCGCGTCCAAA............................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...............CATCTGGTTTTTTGTGGTACGGTTCCTGA................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................TCTGGTTTTTTGTGGTACGGTTTCTGA................................................................................................................ 27 1 1 1.00 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................GCTGCTCTGACATTTCTGGAACTCT.. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................................TACGGTTCCTGATCCATACTAAGTT................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................GGTACGGTTCCTGATCCA............................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................CTCTGACATTTCTGGAACT.... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................TACTAAGTTCATCCGCGTCCAAATGGC......................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...............CATCTGGTTTCGTGAGGTA.......................................................................................................................... 19 3 12 0.08 1 0 0 0 1 0 0 0 0 0
................................................................TAAAGACTAACTCACGTGT......................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 0 0 1
..............................................................ATTAAAGACTAACTCACGC........................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GAAAAAACAAGCGCTGTAGACCAAAAAACACCATGCCAAGGACTAGGTATCATTCACTTTTTAAATTTCTCATTGAATGCGCATTGGATTACGATGGACTAAAGTCGATTCAAGTAGGCGCAGGTTTACCGACGAGACTGTAAAGACCTTGAGAAC
**************************************************..............................................(((....)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
..............................................................................................................CAAGTAGGCGCAGGT............................... 15 0 1 2.00 2 0 2 0 0 0
..........................AACCCCATGCCAAGGACTAA.............................................................................................................. 20 2 2 1.00 2 2 0 0 0 0
...........................ACCCCATGCCAAGGACT................................................................................................................ 17 1 1 1.00 1 1 0 0 0 0
..........................................................................................AGGATGGACTAAACTCCATT.............................................. 20 3 1 1.00 1 0 0 1 0 0
...............................CATGCCAAGGACTAA.............................................................................................................. 15 1 2 0.50 1 1 0 0 0 0
..............................................................................................................CAAGTAGGCGCAGGTCGA............................ 18 2 6 0.33 2 0 2 0 0 0
.......................CCAAACTCCATGCCAAGGAC................................................................................................................. 20 3 4 0.25 1 0 0 0 1 0
..........................AACCCCATGCCAAGGAT................................................................................................................. 17 2 5 0.20 1 1 0 0 0 0
.....................................................................................................................GCGCAGTTTTACCGAC....................... 16 1 8 0.13 1 0 1 0 0 0
............................................................................................................TTTACGTAGGCGCAGGCTTA............................ 20 3 14 0.07 1 0 0 0 0 1
...........................ACCCCATGCCAAGGAT................................................................................................................. 16 2 15 0.07 1 0 0 1 0 0
.............................................................................................................ACAAGTAGGCGCAGAT............................... 16 2 20 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 10:35 AM