ID:

dsi_17847

 Coordinate:

3l:7917740-7917935 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7917203_7917739_-]; CDS [3l_7917203_7917739_-]; CDS [3l_7917936_7918250_-]; exon [3l_7917936_7918250_-]; intron [3l_7917740_7917935_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGGCATCGTGGTGGACAGCGGCGATGGAGTGACGCACGTCATACCCGTGGTAAGTAGCACAGATCTTATCTTATCAGCAGAGTTGGGTTTGCACTGGATTCGGTAAAAAACTGTTTGGAAAGAGAACACAAAACCGAAACAGTAGTCGGATTTATTAAATTAATAAATTCCACATTCTGAGGCTAAGATAAAATAGCGTATTAGTTATAAACATATTAATATATTAAGCTGTTTTTCATTTCTAGGCCGAGGGCTACGTAATCGGCTCCTGCATCAAGCACATTCCCATCGCTGG
**************************************************.....((((.((((.............(((((......)))))((((..((((((.......(((((.......)))))....)))))).)))).((.((((((((((...)))))))))).))..))))..)))).((.((((((((((((((((.........)))))))).....))))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902008
ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..........................................................................................................................................................................................................................................TTTCATTTCTAGGCCGAGGGC......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................GTGGTAAGTAGCATAGATTTT.................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................CTGTTTGGAATGAGTACAC...................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CTACGTAATCGGCTCCTGCG...................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....CATCGTGGTGGACAGCGGC................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................AAAAGCACTTTGGAAAGAGA.......................................................................................................................................................................... 20 3 20 0.55 11 0 0 0 8 0 0 0 2 1
...........................................................................................................AGAACTGTTTGGAAAG............................................................................................................................................................................. 16 1 7 0.29 2 0 0 0 2 0 0 0 0 0
............TGGACGGCGGCGATGGAGTTT....................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0
....................................................................................................................TGGAATGAGAACAGAAAAGCG............................................................................................................................................................... 21 3 7 0.14 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................ATTTCAAGGCCGAGAGCT........................................ 18 2 7 0.14 1 0 0 0 0 0 0 1 0 0
...................................................................................TTGGGTTTGGACTGGA..................................................................................................................................................................................................... 16 1 8 0.13 1 0 0 0 1 0 0 0 0 0
...........................................ACCCGGGGCAAGTAGCA............................................................................................................................................................................................................................................ 17 2 8 0.13 1 0 0 0 0 0 1 0 0 0
...............................................................................AAAGTTGGGTTTGCACG........................................................................................................................................................................................................ 17 2 15 0.07 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GTCCGTAGCACCACCTGTCGCCGCTACCTCACTGCGTGCAGTATGGGCACCATTCATCGTGTCTAGAATAGAATAGTCGTCTCAACCCAAACGTGACCTAAGCCATTTTTTGACAAACCTTTCTCTTGTGTTTTGGCTTTGTCATCAGCCTAAATAATTTAATTATTTAAGGTGTAAGACTCCGATTCTATTTTATCGCATAATCAATATTTGTATAATTATATAATTCGACAAAAAGTAAAGATCCGGCTCCCGATGCATTAGCCGAGGACGTAGTTCGTGTAAGGGTAGCGACC
**************************************************.....((((.((((.............(((((......)))))((((..((((((.......(((((.......)))))....)))))).)))).((.((((((((((...)))))))))).))..))))..)))).((.((((((((((((((((.........)))))))).....))))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
....................................................................................................................................................................................................................................................................ATAGCCGAGGACGTAGTTG................. 19 2 1 1.00 1 1 0 0 0 0
...........CACCTGTCGGCGCTACC............................................................................................................................................................................................................................................................................ 17 1 2 0.50 1 0 1 0 0 0
...........................................................................................................................................................................................................................................................CCCGATGCATTGGCCGCCGA......................... 20 3 5 0.20 1 0 0 1 0 0
.......................................................................................................................TCTTTCTTGTGTCTTGGCTTTGT.......................................................................................................................................................... 23 3 6 0.17 1 0 1 0 0 0
..............................CCTGCATGCAGTATGG.......................................................................................................................................................................................................................................................... 16 2 8 0.13 1 0 0 1 0 0
....................................................................................................................................................................................................................................................................................TCCGTGTAAGAGTAGAGAC. 19 3 19 0.11 2 0 0 2 0 0
......................................................................................................................................................................................................................................................................TGCCGAGGACGTAGT................... 15 1 16 0.06 1 0 0 1 0 0
.....................................GCAATATGGGCCCCAGT.................................................................................................................................................................................................................................................. 17 3 20 0.05 1 0 0 0 1 0
.................................................................................................................................................................................................................................................AGATCCGGCGCCCCA........................................ 15 2 20 0.05 1 0 0 0 0 1
.........................................................................................................................................................................AGGTGTGTGACTCCGA............................................................................................................... 16 2 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 10:33 AM