ID:

dsi_17841

 Coordinate:

3r:17448261-17448403 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.9 -12.5

Flybase annnotation

CDS [3r_17448178_17448505_-]; exon [3r_17448030_17448505_-]

No Repeatable elements found

mature
star
  1. dsi_3941  2r:19482319-19482334 -
  2. dsi_17841  3r:17448382-17448397 -

Sense Strand Reads

###################################################################################################################################################################################################################################################
ACGAGGAGGTGGATACAACGGAGGCGGAGGCGGTGGAGGCTACAACGGCGGCGGAGGTGGAGGAGGTGGTCGTCGTCCAGTATATACGGGCAACTTTGGACCCGGCTGTTATGTCTTCTTCCCTTAACATAGCTCAAGTACGTTGATCAGTACCCGTGCATTCATGCTCCGAGAACACAAAAAACCCAGGCAGGAGGAGGTGGTGGAGGTGGCTACGGAGGAGGCGGTGGAGGTGGCTACGAT
********************************************************((.........((((((.((((.........)))).))....))))..))***************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR902009
testis
 M053
female body
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
.....................................................................................ACGGGCAACTTTGGACCCGGC......................................................................................................................................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................ACGGGCAACTTTGGACCCGGCT........................................................................................................................................ 22 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0
.................................................................................ATATACGGGCAACTTTGGACC............................................................................................................................................. 21 0 1 5.00 5 2 2 0 0 0 0 1 0 0 0 0 0
...................................................................................ATACGGGCAACTTTGGACCCGGC......................................................................................................................................... 23 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
...................................................................................ATACGGGCAACTTTGGACC............................................................................................................................................. 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................ACGGGCAACTTTGGACCCG........................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................ACGGGCAACTTTGGACCC............................................................................................................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ATATACGGGCAACTTTGGACCCGGC......................................................................................................................................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................ATACGGGCAACTTTGGACCCGGCT........................................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAACTTTGGACCCGGCTATGG.................................................................................................................................... 21 3 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.............................................CGGCGGCGGAGGTGGAGGAGGTGGCC............................................................................................................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................GTCGTCCTCCAGTATATA............................................................................................................................................................. 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................TACGGGCAACTTTGGACCC............................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................GTCGTCGTCCAGTATATACGG.......................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................ATACGGGCAACTTTGGACCC............................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............CAACGGAGGCGGAGGCGGTG................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................TATACGGGCAACTTTGGACCCGGCT........................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TACGGGCAACTTTGGACCCGGC......................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CGGGCAACTTTGGACCCGGCG........................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................CGGCGGCGGAGGTGGAGGAGGT................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................TATACGGGCAACTTTGGACC............................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AGTATATACGGGCAACTTTGGACCCG........................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ATATACGGGCAACTTTGGA............................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................AACGGAGGCGGAGGCGGGGGAGG............................................................................................................................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................ATACGGGCAACTTTGGACCCGGCG........................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................ACGGCGGCGGAGGTGGAGGAGGAGGTC............................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
ACGAGGAGGTGGATACAACGG.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTAGGAGGCGGTGGAGGTG........ 19 1 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TACGGAGGATGCGGTGAGGGT......... 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGAGGAGGCGGTGGAGGTGGC...... 21 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................GTGGAGGAGGTGGTCG........................................................................................................................................................................... 16 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGGAGGAGGCGGTGGAGGTGG....... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GAGGAGGCGGTGGAGGTG........ 18 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ACGGAGGCGGCGGTGGAGGTG........ 21 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.CGAGGAGCTGGATACAATAGA............................................................................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................GAAGCGCTGGAGGTGGCAACG.. 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................GTGGAGAAGGGGTTCGTCGT....................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................CAGGTAGGAGGAGGTG......................................... 16 1 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................AGGAGGTCGTCGTCCACT.................................................................................................................................................................. 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................GATGGTGGAGGTGGCT............................. 16 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................TGGAAGAGTAGGTCGTCGTC...................................................................................................................................................................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCGTTGGAGGTGGCAACG.. 18 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................AGGACGGTGATCAGTAAC......................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................GTAACATCGCTCAAGT........................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGCTCCTCCACCTATGTTGCCTCCGCCTCCGCCACCTCCGATGTTGCCGCCGCCTCCACCTCCTCCACCAGCAGCAGGTCATATATGCCCGTTGAAACCTGGGCCGACAATACAGAAGAAGGGAATTGTATCGAGTTCATGCAACTAGTCATGGGCACGTAAGTACGAGGCTCTTGTGTTTTTTGGGTCCGTCCTCCTCCACCACCTCCACCGATGCCTCCTCCGCCACCTCCACCGATGCTA
*****************************************************************************************************************************************((.........((((((.((((.........)))).))....))))..))******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............................................................TCCACCAGCAGCAGGTCATAT............................................................................................................................................................... 21 0 1 4.00 4 4 0 0 0
.......................................................CCACCTCCTCCACCAGCAGCA....................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0
...........................TCCGCCACCTCCGATGTTGCC................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
............................CCGCCACCTCCGATGTTGCC................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0
...............................................................CCCACCAGCAGCAGGTCATAT............................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
.......................................................................................................................................................TGGCCACGTAAGTTCGAGAC........................................................................ 20 3 3 0.33 1 0 0 1 0
..................................................................................................................................................AGTCATGGGCACGAA.................................................................................. 15 1 4 0.25 1 0 0 1 0
.........................................................................................................GACAATACAGAGGAA........................................................................................................................... 15 1 7 0.14 1 0 0 0 1
.........................................................................................................GAGAATACAGAAGAA........................................................................................................................... 15 1 16 0.13 2 0 0 0 2
.......................................................................................................CCGAGAATACAGAGGAA........................................................................................................................... 17 2 11 0.09 1 0 0 0 1
.........................................................................................................................GGAATTGTACCGGGTTC......................................................................................................... 17 2 14 0.07 1 0 0 0 1

Generated: 04/23/2015 at 09:14 PM