ID:

dsi_17837

 Coordinate:

2r:5537740-5537889 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTGCTCCACCTGGCACCGCTGCGAATCATCAATTTTCGGGATGTCACTGCCAATTACACCTTTTCAATATTTGTGCGCATACCTTGGCGTTCGGATCCGTTTCCCTCCGTTTCTGCTCCGCCCTTCTCCGATCCTTGCCCTTCCGGTCCGCTCCTCGTGGCGTCGCCATTTTTTCGTGTGTCGGCGGCATTGGAATACAGTGGCGGAAACTACAAATCAACCGGCAAAAACGGCAACCATCGAGATGTAC
**************************************************...................................((((..((((..((........))..))))...)))).........(((.((((...((((..(((.....(((((...)))))......)))..)))).))))..)))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.......................................................................................................................................................TCCTCGTAGCGTCGCCA.................................................................................. 17 1 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................GAAACTACAAATCAACCGGC......................... 20 0 1 1.00 1 0 1 0 0 0
........................................................................................................................................................CCTCGTAGGGTCGCCA.................................................................................. 16 2 20 0.25 5 5 0 0 0 0
.......................................................................................................................................................TCCTGCTGGCGTCGCCA.................................................................................. 17 2 20 0.20 4 0 0 2 2 0
.......................................................................................................................................................TCCTCGTAGGGTCGCCA.................................................................................. 17 2 10 0.20 2 2 0 0 0 0
................................................................................................................................................GGTTCGCTGCTCGTGACGTC...................................................................................... 20 3 6 0.17 1 0 0 1 0 0
........................................................................GTGCGCAGACGTTAGCGTT............................................................................................................................................................... 19 3 7 0.14 1 0 0 0 0 1
...........................................................................................................................................................................TTTCGTGGGTCGGCGCC.............................................................. 17 2 7 0.14 1 0 0 0 1 0
.....................................................................................................................................................AATCCTCGTAGCGTCGCCA.................................................................................. 19 3 16 0.06 1 1 0 0 0 0
.......................................................................................................................................................TCCTCCTGGGGTCGCCA.................................................................................. 17 2 18 0.06 1 1 0 0 0 0

Anti-sense strand reads

GACGAGGTGGACCGTGGCGACGCTTAGTAGTTAAAAGCCCTACAGTGACGGTTAATGTGGAAAAGTTATAAACACGCGTATGGAACCGCAAGCCTAGGCAAAGGGAGGCAAAGACGAGGCGGGAAGAGGCTAGGAACGGGAAGGCCAGGCGAGGAGCACCGCAGCGGTAAAAAAGCACACAGCCGCCGTAACCTTATGTCACCGCCTTTGATGTTTAGTTGGCCGTTTTTGCCGTTGGTAGCTCTACATG
**************************************************...................................((((..((((..((........))..))))...)))).........(((.((((...((((..(((.....(((((...)))))......)))..)))).))))..)))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 M024
male body
.................................................................................................................................................................................................................................TTTTTTCCGGTGGCAGCTCTA.... 21 3 4 4.50 18 18 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTTTTCCGGTGGCAGCTCTA.... 20 3 16 1.81 29 29 0 0 0 0 0 0 0
.....................................................................................................................GGCGGGATGAGCTTAGGAAC................................................................................................................. 20 3 5 1.80 9 9 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTTTTACCGGTGGCAGCTCTA.... 21 3 7 0.57 4 4 0 0 0 0 0 0 0
.......AGGACCGTGGCGACGCTT................................................................................................................................................................................................................................. 18 1 2 0.50 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTTTTTCCGGTGGCAGCTCTAC... 22 3 3 0.33 1 1 0 0 0 0 0 0 0
..............TGACGAAGCTTAGTAGTT.......................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................TTTTCCGGTGGCAGCTCTAC... 20 3 20 0.25 5 5 0 0 0 0 0 0 0
.....................................................................................................................GGCGGGATGAGCTTAGGAA.................................................................................................................. 19 3 14 0.21 3 3 0 0 0 0 0 0 0
......................................................................................................................ACGGGAAGAGGCTGGGAA.................................................................................................................. 18 2 5 0.20 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................TTTTTTCCGGTGGCAGCTCT..... 20 3 8 0.13 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGTTGTTCAGTTGTCCGTTTT..................... 22 3 9 0.11 1 0 0 0 0 1 0 0 0
..............................................................................................................................AGGCTAGGCAAGGGAAGGCCG....................................................................................................... 21 3 9 0.11 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTTTTGACGTTGGCAGCTCT..... 20 3 14 0.07 1 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................TTGATGATTAGATGGC........................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0
.............................................................................................................................................AGGCGAGGTGAGGAGCGCCG......................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 1
...............................................................................ATGGGGCCGCAAGCCAAG......................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0
..............................................................................................CAGGCGAAGGGAGTCAAAG......................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Generated: 04/23/2015 at 04:22 PM