ID:

dsi_17830

 Coordinate:

2l:18560014-18560219 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.7 -40.7 -40.4

Flybase annnotation

exon [2l_18560220_18560474_+]; CDS [2l_18560220_18560474_+]; CDS [2l_18559946_18560013_+]; exon [2l_18559687_18560013_+]; intron [2l_18560014_18560219_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGACCCAATCCCCGCGAGTCGGCAGGTATCCTATCCTCGCTCATGTTCTGGTACGCACACGTTTCATCCTACCGCTAAGAAGTGTTTCCTTTGAGCACGTGGGTACATATGTACTCACCTATTTATGTGCCTTTCAACTGCCGCTGAGAAGTGACATCCGAAGTCAACAGTTATCGGATACTCATATTGTTCGTAGCATAATTCAAAGCTAGCTACCGTGGCGAAATCAATTTACACAATTACTCTCCTATTCCAGCTTTGCCCTGCCCATTCTGTTCAAGGGTCGCAAACAGACGCTCCAGCCCA
**************************************************...(((.((((...........((((....))))....(((((((((.(((((((((((.(((......))).)))))))))....))))).((((.(((((((.((((((............))))))..))))....))).)))).....))))))........))))))).................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
.......................................................................................................................................................................................................................................................................................AGGGTCGCAAACAGACGCTCC...... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CAAGGGTCGCAAACAGACGCT........ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....CCAATCCCCGCGAGTCGGC........................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................GTTCAAGGGTCGCAAACAG............. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................GTCGGCAGGGATCCTATCCT............................................................................................................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................CTGCCCATTCTGTTCAAGG........................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TCAACAGTTATCGGATACTCATATTC..................................................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................AACAGTTATCGGATACTCATA........................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TGCCCTGCCCATTCTGTTCAAGGGTCG.................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................CTGTTCAAGGGTCGCAAACAGACGCT........ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TCTGCTTTGCCCTGCCCATTCTGTTCA........................... 27 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................CATGTTCTGGTACGCACACG..................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
................AGTCGGCAGGTATCCTATCCTC............................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................TAAGAAGTGTTTCGTGTGAACA................................................................................................................................................................................................................. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
.........CCCGGCGAGTAGGCAGG........................................................................................................................................................................................................................................................................................ 17 2 10 0.30 3 0 0 0 0 3 0 0 0 0 0 0
....................................TTGCTCATGTTCTGGT.............................................................................................................................................................................................................................................................. 16 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
....................GGCAGGTATCGTATG............................................................................................................................................................................................................................................................................... 15 2 20 0.20 4 0 0 0 0 3 0 0 0 0 1 0
.......................................................................CCGCTAAGGAGTGTGT........................................................................................................................................................................................................................... 16 2 20 0.20 4 0 0 0 0 0 0 0 0 3 1 0
........................................................................................................................................ACTGACGCTGAGAAGCGA........................................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
..........................................ATGTTCTGGGCCGCACGC...................................................................................................................................................................................................................................................... 18 3 20 0.15 3 1 0 0 0 0 2 0 0 0 0 0
........................................................................................CTTTGAGGGCGTGGGTA......................................................................................................................................................................................................... 17 2 15 0.13 2 0 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................................CTGACGCTGAGGAGTGA........................................................................................................................................................ 17 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................CCGCTAAGAAGTGTGTA.......................................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0
........CCCCGGCGAGTAGGCAGG........................................................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................AACTGCCGGTGATAAG........................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................TAAGAAGTGTTTCCTTACT.................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GCTGGGTTAGGGGCGCTCAGCCGTCCATAGGATAGGAGCGAGTACAAGACCATGCGTGTGCAAAGTAGGATGGCGATTCTTCACAAAGGAAACTCGTGCACCCATGTATACATGAGTGGATAAATACACGGAAAGTTGACGGCGACTCTTCACTGTAGGCTTCAGTTGTCAATAGCCTATGAGTATAACAAGCATCGTATTAAGTTTCGATCGATGGCACCGCTTTAGTTAAATGTGTTAATGAGAGGATAAGGTCGAAACGGGACGGGTAAGACAAGTTCCCAGCGTTTGTCTGCGAGGTCGGGT
**************************************************...(((.((((...........((((....))))....(((((((((.(((((((((((.(((......))).)))))))))....))))).((((.(((((((.((((((............))))))..))))....))).)))).....))))))........))))))).................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M024
male body		 GSM343915
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
....................................AACGAGTACAAGACCAAGGGT......................................................................................................................................................................................................................................................... 21 3 4 1.25 5 4 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................CCAGCGTTTGTCTGCGAGGTC.... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................CGTGTGCAAAGTAGGATGGCGATT.................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TAATGAGAGGATAAGGTCGAAA.............................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
TTTGGGTTAGGGGCGCTCAGC............................................................................................................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................TTTTAGGAGCGAGTACAAGAC................................................................................................................................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................GTAGGATGGCGATTCTTCACA............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TGTCAATAGCCTATGAGT.......................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................CGAGTACAAGACCATGCGTGT....................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TGCAAAGTAGGATGGCGATTC................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................GATAGGAGCGAGTACAAGACC............................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATGCGTGTGCAAAGTAGGAT........................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................ACTCGTGCACCCATGTATACGT................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................GATGGCGATTCTTCACAA............................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................CAAAAAGCAAACTCGTGCA.............................................................................................................................................................................................................. 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATGGCACCGCTTTATT............................................................................. 16 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........AGGGGCTCTCAGCAGTCC........................................................................................................................................................................................................................................................................................ 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................CGAGTACAAGACCAAGGGTTTG...................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CAGGTAACTCGTGCACACAT......................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................AGACCGAAGCGGGACGGGT.................................... 19 3 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................ATGACGGGTAAGACAAGTT.......................... 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGAGATTCTTCACAGAGCA........................................................................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................TCTTCACTATCGGCTTCGGT............................................................................................................................................ 20 3 16 0.13 2 0 0 0 0 0 0 0 0 0 0 0 2 0
....................................................................................................................................................TTCACTGTTGGCTTC............................................................................................................................................... 15 1 16 0.13 2 0 0 0 1 0 0 0 1 0 0 0 0 0
.....................................ACGAGTACAAGACCAAGGGT......................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................GAGTACAAGACCAAGGGTTTG...................................................................................................................................................................................................................................................... 21 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GCGTCTGTCTGCGAG....... 15 1 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................CGAGTACAAGACCAAGGGTTT....................................................................................................................................................................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TGACTGCGAGGTCGTGT 17 2 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................TATTCACTGTCGGCTTC............................................................................................................................................... 17 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:18559964-18560269 + dsi_17830 CGACC---------CAATCCCCGCGAGTCGGCAGGTATCCTATCCTCGCTCATGTTCTGGTACGCAC-ACGTTT--CATCCTACCGCTAAGAA------------------------GTGTTTC-CTTTGAGCAC--------G----TGGGT--------ACATATGTACTCACCTATT------TAT--------------------------GT-------------------------------------------------------------------------------------------------------------GCCTTTCAA-----CTGCCGC--TGA---G-AA--------GTGACATCC--GAAGTCAAC----AGTTATCGGATACT-CA-TATTGTTCGTAGCATAATTCA-AA-GCTAGCTACCGTGGCGAAATCAATTTACACAAT-TAC------------TCTCCTAT--------TCCAGCTTTGCCCTGCCCATTCTGTTCAAGGGTCGCAAACAGACGCTCCAGCCCA
droSec2 scaffold_7:2632648-2632953 + CGACC---------CAATCCCCGCGAGTCGGCAGGTATCCTATCCTCGCTCATGTTCTGGTACGCAC-ACGTTT--CATCCTACCGCTAAGAA------------------------GTGTTTC-CTTTGAGCAC--------A----TGGGT--------ACATATGTACTCACCTATT------TAT--------------------------GT-------------------------------------------------------------------------------------------------------------GCCTTTCAA-----CTGCCGC--TGA---G-AA--------GTGACATCC--GAAGTCAAC----AGTTAACGGATACT-CA-TATTGTTCGTAGCATAATTCA-AA-GCTAGCTACCGTGGCGAAATCAATTTACACAAT-TAC------------TCTCCTAT--------TCCAGCTTTGCCCTGCCCATTCTGTTCAAGGGTCGCAAACAGACGCTCCAGCCCA
dm3 chr2L:19003687-19003997 + CCACC---------CAATCCCCGCGAGTCGGCAGGTATCCTATCCTCGCTCATGTTCTGGTACGCTC-ACGTTT--CATCCTACCGCTAAGAA------------------------GTGTTTC-CTTTGAGCAC--------A----TGCGTACA----TACATATGTACTCACCTATG------AAT--------------------------GT-------------------------------------------------------------------------------------------------------------TCTTTTCAA-----CTGCCGC--TGA---G-AA--------GTGACATCC--GAAGACAAC----CGTTATCGGATACCACA-TATTGTTCGTAGCATAATTCA-AA-GCTAGCCACAGTTGCGAAAACAATTTACACAAT-TAC------------TTTCCTAT--------TCCAGCTTTGCCCTGCCCATTCTGTTCAAGGGTCGCAAACAGACGCTTCAGCCCA
droEre2 scaffold_4845:5265708-5266026 - CCGCC---------CAATCCCCGCGAGTCGGCAGGTATCTTATCCTCGCTTATGTTCTGGTACGCAC-ACGTTA--CATCCTACCGCTAAGAA------------------------GTGTTTC-CTTTGAGCAC--------ATACATAGGTACATATGTACATATGTACTCACCTATG------TGC--------------------------AT-------------------------------------------------------------------------------------------------------------ACCTTTCTA-----CTGCCGC--TGA---G-AA--------GTGACATCC--GAAGACAAC----CGTTATCGGATACTACA-TATTGTTCGTAGCATAACTCC-CA-ATTACCTATCGTTGCGAAATCAATTTACACAGT-TAC------------TCTCCTAT--------TCCAGCTTTGCCCTGCCCATCCTGTTCAAGGGTCGCAAACAGACGCTTCAGCCCA
droYak3 2R:5521312-5521636 + CCGCC---------CAATCCCCGCGAGTCGGCAGGTATCTTATCCTCGCTTATGTTCTGGTACGCAC-ACGTTT--CATCCTACCGCTAAGAA------------------------GTGTTTC-CTTTGACCACTTTTCTACGTACATCGGTACA----TACATATGTACTCACCTATG------TA-------------------CCGTC------------------------------------------------------------------------------------------------------------------ACCTTTCTA-----CTGCCAC--TTA---G-AA--------GTGACATCC--GAAGACAAC----CGTTATCGGATACCACA-TACTGTTCGTAGCATAACTCC-CA-TTTACCCGCCGTTGCGAAATCAATTTACGCAAT-TAC------------ACTCCTAT--------TCCAGCTTTGCCCTGCCCATTCTGTTCAAGGGTCGCAAGCAGACGCTCCAGCCCA
droEug1 scf7180000409463:1334086-1334395 + CCACC---------GAATCCGCGCGAGTCGGCAGGTATTTTATCCTCGCTAATGTTCTGGTACGCAAAAAGTTT--CATCTTACCGCTAAGAAT-----------------------GTGTT-----ATC---------------------------------AAGTGTTATCACATATGCCAAT--------------------TAACTTTAAG-TAC-------------------------------------------------------------------------------------------------------A--TACCTATCGA-----CTGACGC--TGAGTCG-AA--------GTGACATCC--GAAGACAAC----CGTTATCGGATACCACA-TACTGTTCGTAGCATAAATAT-AA-ATTGCTCGTCGTTGCGAAATCGATTTACATAAT-TGT------------TCTCTTAT--------TCCAGCTTTGCCCTGCCCATTCTATTCAAGGGTCGCAGGCAGACGCTTGAGCCAT
droBia1 scf7180000302422:4645972-4646259 - CCGCC---------CAATCCGCGCGAGTCGGCAGGTATTTTATCCTCGCTAATGTTCTGGTACGCAA-AAGTCA--AATTATAGCGCTAAGAAAGC---------------------GTGCT-----ATC---------------------------------AAAAGT-------------------------------------ACTTCACAAGT-------------------------------------------------------------------------------------------------------------ACATTTCAA-----CTGACGC--TGT---G-AA--------GTGACATCC--GAAGACAAC----CGTTATCGGATACCACA-TATTGTTCGTAGCACAATTAT-AA-ATTGCCCGCCGTTGCGAAATCGATTTACATAAT-GCC------------TTTCCAAT--------TCCAGCTTTGCCCTGCCGATCCTGTTCAAGGGTCGCAAGCAGACGCTCCAGCCGA
droTak1 scf7180000415357:168292-168600 + CCCCC---------CAATCCGCGCGAGTCGGCAGGTATTTTATCCTCGCTAATGTTCTGGTACGCAA-TCGTTT--CATTTTACCGCTAAGAAAGG-----------------------GTT-----ATC---------------------------------AA---------------------------------------GTACCTTTAAG-TGTCAAGTAC-----------------------------------------------------------------------------------CTTTTATGTCAATG--CACCTGTCAA-----CTGACGC--CGA---G-AA--------GTGACATCC--GAAGACAAC----CGTTATCGGATACCACA-TATTGTTCGTAGCCTAACTATACAAATTTCCCGCTGTTGCGAAATCGATTTACATAAT-TCT------------TCTCCTAT--------TCCAGCTATGCCCTGCCCATTCTGTTCAAGGGTCGCAAGCAGACGCTCCAGCCGA
droEle1 scf7180000491046:3998870-3999177 - CCACC---------CAATCCGCGCGAGTCGGCCGGTATTTTATCCTCGCTAATGTTCTGGTACGCAA-AAGTCT--CATCTTACCGCTAGGAATGT---------------------GTGTT-----ATCACCAC--------A----TATGT--------ACATA-----------------------GTGACGAACACTC--GTACCTTTAAG-TG-----------------------------------------------------------------------------------------------------------------TCAA-----CTGCCGC--TGA---G-AG--------GTGACATCC--GAAGACAAC----CGTTATCGGATACCACA-TAGTGTTCGTAGCATAACTCC-GA-ATCATCCGTGCTTGCGCGATTGATTTACATAAT-TCA------------TCTCTTAT--------TCCAGCTATGCCCTGCCCATTCTGTTCAAGGGTCGCCGGCAGACGCTCCAGCCCA
droRho1 scf7180000777864:27629-27928 - CCCCC---------CAATCCGCGCGAGTCGGCAGGTATTCTATCCTCGCTAATGTTCTGGTACGCAA-AAGTTT--CATCTTACCGCTAGGAAATT---------------------GTGTTTC---------------------------------------ATGTGTAATCACATG--CCAA------------ATACTC--TTACCTTTAAG-AG-----------------------------------------------------------------------------------------------------------------TCAA-----CTGCCGC--TGA---------------GTGACATCC--GAAGCCAAG----CGTTATCGGATTCCACA-TATTGTTCGTAGCATTACTCT-AA-ATTGCCCGTCGTTGCGAAATCAATTTACATAAT-TGT------------TCTCTTAT--------TCCAGCTATGCCCTGCCCATTCTGTTTAAGGGGCGCCGGCAGACGCTCCAACCCA
droFic1 scf7180000453842:421942-422281 - CCCAC---------TAATCCACGCGAATCTGCGGGGATTTGTTCCTCGCTTATGTTTTGGTATGTTT-TGTTTG--AAATCT------AA---------------------------------------------------------------ACA----AAAATGTGTAATAACATTAA------T-----------------------------TTC-AAAATCATGTAAAATTATAATGATAAAATGCTAACGTTATCAGTAGATAATGAAAGCTTAAAGATCACATCTTTCATGACGGCTTATCATGATTGTATAA---------TCTTTA-----ATGACAT--TGGGTGA-AGGAAGCTTGTAGCTTCCCAACAAA-------------------------------------------------------------------ACAAACGATTTTCATAAT-ATTTACTAATATCTGTTATTTTT--------CACAGCTTCGCGCTTCCCATACTTTTTAAGGGAAGAACAAAGACCTTAGAGCCCA
droKik1 scf7180000302412:469912-470191 - CCGCC---------CAATCCGCGCGAGTCGGCAGGTATTTTATCCTCGCTAATGTTCTGGTACGCACTATGCT---CCTCTTACT------------------------------------------------------------------------------ACATCCTATCACACG--CTA----------TA------A--GA-ACCATAAG-TG-----------------------------------------------------------------------------------------------------------------ACAC-----CTGCCGCGTTGA---G-AA--------CTGATATCC--GAAGACAAC----TGTTATCGGACACC--A-TATTGTTCGTAGCATAAATAA-CA-ATTGCTGACCATTGCGAAATCGATTTACATAAG-ACC------------TCTTTTCT--------TCCAGCTTTGCCCTGCCCATACTGTTCAAGGGCCGCAAGCAAACGCTCCAGCCCA
droAna3 scaffold_12916:5421713-5422068 - CCACC---------AAATCCGCGCGAATCGGCTGGCATATTGTCCTCATTAATGTTCTGGTACGCAA-ATGTT---------CCCGTTAACACAGTGTGTGTGATGTGTGTG--------------------TGT--------G----TGG-------------GGTGTTATCAGATG--CCCATGTATA-------GCTTA--GTACCTTCAAG-TGTCACCTACCG---------------------------------------------------------------------GCCGG-GAGTCTCAATTATAAAAATGTG------ACATCCGAA----ATC--TGA---AATA--------CTGTCATCC--GAAGGCAAC----TGTTATCGGATACGCATTCATTGTTCGTAGAATTATTTA-TA-GTTTCTGTTCGTTGCGAAATTGATTTACATAAT-TCC------------ACTTCTCT--------TCCAGCTTTGCTCTGCCCATTCTGTTCAAGGGGCGGAAGCAAAAGCTCCAAGCCA
droBip1 scf7180000396568:1431101-1431442 + CCACC---------CAATCCGCGCGAATCGGCCGGTATATTATCCTCATTAATGTTCTGGTACGCAA-ATGTTT---------CCGTTAACAGTGT--GGGTGATGTGTGTG------------------------------------TGGGGTG-----TGTTGGTGTTATCACATG--CCCATGTATA-------GCTTA--GTACCT---------------------------------------------------------------------------------------GCCGGCGAATCTCAATTATAAAAATGTG------ACATCTGAA----ATC--TGA---AATA--------CTGTCATCC--GAAGACAAC----TGTTATCGGATACGCCTTCATTGTTCGTAGCATTATTTA-TA-GTTTCTGATTGTTGCGAAATTGATTTACATAAT-GCC------------TCTTCTCT--------TCCAGCTTTGCCCTGCCCATTCTTTTCAAGGGACGCAAACAGAGGCTCCAAGCAA
dp5 4_group3:681129-681485 - CCAAC---------TAATCCCCGCGAGTCGGCAGGTATTTTGTCCTCGCTAATGTTCTGGTATGCAC-AGGTTTTTCA-GTTACCGTTAAGAATGA--AA-TTATATATATGTTTGTGTGTTTATCT--G--TAC--------------GCGCAC-----TGTATATGTTATCACATATGGGAAT--ATGTGATAAAA----AA-TACGTTTAAATT------------------------------------------------------------------------------------------------------------------ACAACAGAAGCGAAGC--TGA---AAAA--------CAGACACCTGAGAAGACAACCAGCTCTTATCG-ATACG--A-TATTGTTCGTAGCATATTTTTGTA-ATTATTCTTGATTGCGAAATAGATTTACATAAGATTC------------TCTC-CGT--------TTCAGCTATGCCCTCCCCATACTGTTCAAGGGGCGGAAAAAGACCCTGCAGCCAA
droPer2 scaffold_1:2157292-2157648 - CCAAC---------TAATCCCCGCGAGTCGGCAGGTATTTTGTCCTCGCTAATGTTCTGGTATGCAC-AGGTTTTTCA-GTTACCGTTAAGAATGA--AA-TTATATATATGTGTGTGTGTTTATCT--G--TAC--------------GCGCAC-----TGTATATGTTATCACATATGGGAAT--ATGTGATAAAA----AA-TACGTTTAAATT------------------------------------------------------------------------------------------------------------------ACAACAGAAGCGAAGC--TGA---AAAA--------CAGACACCTGAGAAGACAACCAGCTCTTATCG-ATACG--A-TATTGTTCGTAGCATATTTTTGTA-ATTATTCTCGATTGCGAAATAGATTTACATAAGATTC------------TCTC-CGT--------TTCAGCTATGCCCTCCCCATACTGTTCAAGGGGCGGAAAAAGACCCTGCAGCCAA
droWil2 scf2_1100000004585:8315113-8315189 + AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----AATTTAT-TTT------------TCTCTTGT--------TCTAGGTACACTTTGCCTACATTTCTTAAGGGTCGCAAAAGAACATTGGATACCA
droVir3 scaffold_12963:5120812-5120864 - C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTTGCGCTGCCCATATTGTTCAAGGGCCGCAAGAAAACATTGGAGCCCA
droMoj3 scaffold_6540:24891443-24891519 + AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATATCTT-TGT------------TGTTCCA---------TTAAGCTTTGCCATGCCAGTTCTGTTTAAAGGACGGCAAAAGACACTAGAGCAAA
droGri2 scaffold_14830:2231534-2231638 + AACGCTCGCTATCTCAATATATACGTGTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA------------TCTCTTGTTTCATCCGTAAAGCTTTGCGATGCCCGTTTTGTTTAAGGGTCGCCAGAAAGCACTGGAACAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGACC---------CAATCCCCGCGAGTCGGCAGGTATCCTATCCTCGCTCATGTTCTGGTACGCAC-ACGTTT--CATCCTACCGCTAAGAA------------------------GTGTTTC-CTTTGAGCAC--------G----TGGGT--------ACATATGTACTCACCTATT------TAT--------------------------GT-------------------------------------------------------------------------------------------------------------GCCTTTCAA-----CTGCCGC--TGA---G-AA--------GTGACATCC--GAAGTCAAC----AGTTATCGGATACT-CA-TATTGTTCGTAGCATAATTCA-AA-GCTAGCTACCGTGGCGAAATCAATTTACACAAT-TAC------------TCTCCTAT--------TCCAGCTTTGCCCTGCCCATTCTGTTCAAGGGTCGCAAACAGACGCTCCAGCCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTCGCAAACAGACGCTCC......2111.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGTCGCAAACAGACGCT........2111.00110000000000000000
....C---------CAATCCCCGCGAGTCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGGGTCGCAAACAG.............1911.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCATTCTGTTCAAGG........................1911.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCAAC----AGTTATCGGATACT-CA-TATTC............................................................................................................................................2611.00100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................AAC----AGTTATCGGATACT-CA-TA...............................................................................................................................................2111.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCTGCCCATTCTGTTCAAGGGTCG....................2711.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTCAAGGGTCGCAAACAGACGCT........2611.00101000000000000000
..................................................CATGTTCTGGTACGCAC-ACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
.........................AGTCGGCAGGTATCCTATCCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.......................................................................................TAAGAA------------------------GTGTTTC-CTTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
droSec2
CGACC---------CAATCCCCGCGAGTCGGCAGGTATCCTATCCTCGCTCATGTTCTGGTACGCAC-ACGTTT--CATCCTACCGCTAAGAA------------------------GTGTTTC-CTTTGAGCAC--------A----TGGGT--------ACATATGTACTCACCTATT------TAT--------------------------GT-------------------------------------------------------------------------------------------------------------GCCTTTCAA-----CTGCCGC--TGA---G-AA--------GTGACATCC--GAAGTCAAC----AGTTAACGGATACT-CA-TATTGTTCGTAGCATAATTCA-AA-GCTAGCTACCGTGGCGAAATCAATTTACACAAT-TAC------------TCTCCTAT--------TCCAGCTTTGCCCTGCCCATTCTGTTCAAGGGTCGCAAACAGACGCTCCAGCCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................GTTTC-CTTTGAGCAC--------A----TGGGT--------.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
............................................CTCGCTCATGTTCTGGTACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.........................................ATCCTCGCTCATGTTCTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
dm3
CCACC---------CAATCCCCGCGAGTCGGCAGGTATCCTATCCTCGCTCATGTTCTGGTACGCTC-ACGTTT--CATCCTACCGCTAAGAA------------------------GTGTTTC-CTTTGAGCAC--------A----TGCGTACA----TACATATGTACTCACCTATG------AAT--------------------------GT-------------------------------------------------------------------------------------------------------------TCTTTTCAA-----CTGCCGC--TGA---G-AA--------GTGACATCC--GAAGACAAC----CGTTATCGGATACCACA-TATTGTTCGTAGCATAATTCA-AA-GCTAGCCACAGTTGCGAAAACAATTTACACAAT-TAC------------TTTCCTAT--------TCCAGCTTTGCCCTGCCCATTCTGTTCAAGGGTCGCAAACAGACGCTTCAGCCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................TATCCTATCCTCGCTCATGTTCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CACC---------CAATCCCCGCGAGTCGGCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................A-----CTGCCGC--TGA---G-AA--------GTGACATC...................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTTGAGCAC--------A----TGCGTACA----TACATATG..................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GTGACATCC--GAAGACAAC----CGT................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000
CCACC---------CAATCCCCGCGAGTCGGCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
.......................................................................................TAAGAA------------------------GTGTTTC-CTTTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................ATCC--GAAGACAAC----CGTTATCG...........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................TACTCACCTATG------AAT--------------------------GT-------------------------------------------------------------------------------------------------------------TCTTTT..............................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TTT--CATCCTACCGCTAAGAA------------------------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................C----CGTTATCGGATACCACA-TATT.............................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATCCCCGCGAGTCGGCAGGTATCCTATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CCACC---------CAATCCCCGCGAGTCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGCAAACAGACGCTTCAG....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CATGTTCTGGTACGCTC-ACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TGCCGC--TGA---G-AA--------GTGACATCC--GAAGACAA........................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CTACCGCTAAGAA------------------------GTGTTTC-CTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AGCAC--------A----TGCGTACA----TACATATGTACT..............................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
...............................................GCTCATGTTCTGGTACGCTC-ACGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGTCGCAAACAGACGCTTCA.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TACCGCTAAGAA------------------------GTGTTTC-CTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CGGCAGGTATCCTATCCTCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CGTTT--CATCCTACCGCTAAGAA------------------------GTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TATCGGATACCACA-TATTGTT..........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCAAGGGTCGCAAACAGACGCT........2511.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GGTATCCTATCCTCGCTCATGTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAACAGACGCTTCAGC...1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................G-AA--------GTGACATCC--GAAGACAAC----CGG................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GACAAC----CGTTATCGGATACCACA-TA...............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--------TCCAGCTTTGCCCTGCCCAT...................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GGATACCACA-TATTGTTCGTA......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TTGAGCAC--------A----TGCGTACA----TACATATG..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCAAGGGTCGCAAACAGA............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................GTTTC-CTTTGAGCAC--------A----TGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGTCGCAAACAGACGCTTCAGCC..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTTCAAGGGTCGCAAACAGACGC.........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................CCTCGCTCATGTTCTGGTACGCTC-ACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TATG------AAT--------------------------GT-------------------------------------------------------------------------------------------------------------TCTTTTCAA-----CTGCCGC--.............................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CCCGCGAGTCGGCAGGTATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
......................................................................................................................TGTTTC-CTTTGAGCAC--------A----TGCGTACA----..........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................TACTCACCTATG------AAT--------------------------GT-------------------------------------------------------------------------------------------------------------TCTTTTCAA-----C.....................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GA---G-AA--------GTGACATCC--GAAGACAAC----CGC................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................ATCCTATCCTCGCTCATGTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TTTC-CTTTGAGCAC--------A----TGCGTA................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................GA---G-AA--------GTGACATCC--GAAGACAAC----CGT................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................CCCCGCGAGTCGGCAGGTATCCTATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................A--------GTGACATCC--GAAGACAAC----CG.................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................GCCGC--TGA---G-AA--------GTGACATCC--GAAGACAAC----...................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................G-AA--------GTGACATCC--GAAGACAAC----CGT................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TATCCTATCCTCGCTCATGTTCTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CC--GAAGACAAC----CGTTATCGGATACCACA-.................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TGCCGC--TGA---G-AA--------GTGACATCC--GAAGACA.........................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CATCCTACCGCTAAGAA------------------------GTGTTTC-C............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGTCGCAAACAGACGCT........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................................TATCCTATCCTCGCTCATGTTCTGGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGGTCGCAAACAGACGC.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CTCGCTCATGTTCTGGTACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCATTCTGTTCAAGGGTCGCAA.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCGCC---------CAATCCCCGCGAGTCGGCAGGTATCTTATCCTCGCTTATGTTCTGGTACGCAC-ACGTTA--CATCCTACCGCTAAGAA------------------------GTGTTTC-CTTTGAGCAC--------ATACATAGGTACATATGTACATATGTACTCACCTATG------TGC--------------------------AT-------------------------------------------------------------------------------------------------------------ACCTTTCTA-----CTGCCGC--TGA---G-AA--------GTGACATCC--GAAGACAAC----CGTTATCGGATACTACA-TATTGTTCGTAGCATAACTCC-CA-ATTACCTATCGTTGCGAAATCAATTTACACAGT-TAC------------TCTCCTAT--------TCCAGCTTTGCCCTGCCCATCCTGTTCAAGGGTCGCAAACAGACGCTTCAGCCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGGTCGCAAACAGACGCTTCAGCC..2819.0090000009
..................................GTATCTTATCCTCGCTTATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................GACATCC--GAAGACAAC----CGTTATCGG..........................................................................................................................................................2511.0010000010
...............AATCCCCGCGAGTCGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
CCGCC---------CAATCCCCGCGAGTCGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
droYak3
CCGCC---------CAATCCCCGCGAGTCGGCAGGTATCTTATCCTCGCTTATGTTCTGGTACGCAC-ACGTTT--CATCCTACCGCTAAGAA------------------------GTGTTTC-CTTTGACCACTTTTCTACGTACATCGGTACA----TACATATGTACTCACCTATG------TA-------------------CCGTC------------------------------------------------------------------------------------------------------------------ACCTTTCTA-----CTGCCAC--TTA---G-AA--------GTGACATCC--GAAGACAAC----CGTTATCGGATACCACA-TACTGTTCGTAGCATAACTCC-CA-TTTACCCGCCGTTGCGAAATCAATTTACGCAAT-TAC------------ACTCCTAT--------TCCAGCTTTGCCCTGCCCATTCTGTTCAAGGGTCGCAAGCAGACGCTCCAGCCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................CGCTTATGTTCTGGTACGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..................................GTATCTTATCCTCGCTTATGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATTCTGTTCAAGGGTCGCA..................2311.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTCGCAAGCAGACGCTCCAGCC..2511.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGTCGCAAGCAGACGCTCCC.....2411.00100000100000
droEug1
CCACC---------GAATCCGCGCGAGTCGGCAGGTATTTTATCCTCGCTAATGTTCTGGTACGCAAAAAGTTT--CATCTTACCGCTAAGAAT-----------------------GTGTT-----ATC---------------------------------AAGTGTTATCACATATGCCAAT--------------------TAACTTTAAG-TAC-------------------------------------------------------------------------------------------------------A--TACCTATCGA-----CTGACGC--TGAGTCG-AA--------GTGACATCC--GAAGACAAC----CGTTATCGGATACCACA-TACTGTTCGTAGCATAAATAT-AA-ATTGCTCGTCGTTGCGAAATCGATTTACATAAT-TGT------------TCTCTTAT--------TCCAGCTTTGCCCTGCCCATTCTATTCAAGGGTCGCAGGCAGACGCTTGAGCCATSizeHit CountTotal NormTotal
No Reads
droBia1
CCGCC---------CAATCCGCGCGAGTCGGCAGGTATTTTATCCTCGCTAATGTTCTGGTACGCAA-AAGTCA--AATTATAGCGCTAAGAAAGC---------------------GTGCT-----ATC---------------------------------AAAAGT-------------------------------------ACTTCACAAGT-------------------------------------------------------------------------------------------------------------ACATTTCAA-----CTGACGC--TGT---G-AA--------GTGACATCC--GAAGACAAC----CGTTATCGGATACCACA-TATTGTTCGTAGCACAATTAT-AA-ATTGCCCGCCGTTGCGAAATCGATTTACATAAT-GCC------------TTTCCAAT--------TCCAGCTTTGCCCTGCCGATCCTGTTCAAGGGTCGCAAGCAGACGCTCCAGCCGASizeHit CountTotal NormTotal
No Reads
droTak1
CCCCC---------CAATCCGCGCGAGTCGGCAGGTATTTTATCCTCGCTAATGTTCTGGTACGCAA-TCGTTT--CATTTTACCGCTAAGAAAGG-----------------------GTT-----ATC---------------------------------AA---------------------------------------GTACCTTTAAG-TGTCAAGTAC-----------------------------------------------------------------------------------CTTTTATGTCAATG--CACCTGTCAA-----CTGACGC--CGA---G-AA--------GTGACATCC--GAAGACAAC----CGTTATCGGATACCACA-TATTGTTCGTAGCCTAACTATACAAATTTCCCGCTGTTGCGAAATCGATTTACATAAT-TCT------------TCTCCTAT--------TCCAGCTATGCCCTGCCCATTCTGTTCAAGGGTCGCAAGCAGACGCTCCAGCCGASizeHit CountTotal NormTotal
No Reads
droEle1
CCACC---------CAATCCGCGCGAGTCGGCCGGTATTTTATCCTCGCTAATGTTCTGGTACGCAA-AAGTCT--CATCTTACCGCTAGGAATGT---------------------GTGTT-----ATCACCAC--------A----TATGT--------ACATA-----------------------GTGACGAACACTC--GTACCTTTAAG-TG-----------------------------------------------------------------------------------------------------------------TCAA-----CTGCCGC--TGA---G-AG--------GTGACATCC--GAAGACAAC----CGTTATCGGATACCACA-TAGTGTTCGTAGCATAACTCC-GA-ATCATCCGTGCTTGCGCGATTGATTTACATAAT-TCA------------TCTCTTAT--------TCCAGCTATGCCCTGCCCATTCTGTTCAAGGGTCGCCGGCAGACGCTCCAGCCCASizeHit CountTotal NormTotal
No Reads
droRho1
CCCCC---------CAATCCGCGCGAGTCGGCAGGTATTCTATCCTCGCTAATGTTCTGGTACGCAA-AAGTTT--CATCTTACCGCTAGGAAATT---------------------GTGTTTC---------------------------------------ATGTGTAATCACATG--CCAA------------ATACTC--TTACCTTTAAG-AG-----------------------------------------------------------------------------------------------------------------TCAA-----CTGCCGC--TGA---------------GTGACATCC--GAAGCCAAG----CGTTATCGGATTCCACA-TATTGTTCGTAGCATTACTCT-AA-ATTGCCCGTCGTTGCGAAATCAATTTACATAAT-TGT------------TCTCTTAT--------TCCAGCTATGCCCTGCCCATTCTGTTTAAGGGGCGCCGGCAGACGCTCCAACCCASizeHit CountTotal NormTotal
No Reads
droFic1
CCCAC---------TAATCCACGCGAATCTGCGGGGATTTGTTCCTCGCTTATGTTTTGGTATGTTT-TGTTTG--AAATCT------AA---------------------------------------------------------------ACA----AAAATGTGTAATAACATTAA------T-----------------------------TTC-AAAATCATGTAAAATTATAATGATAAAATGCTAACGTTATCAGTAGATAATGAAAGCTTAAAGATCACATCTTTCATGACGGCTTATCATGATTGTATAA---------TCTTTA-----ATGACAT--TGGGTGA-AGGAAGCTTGTAGCTTCCCAACAAA-------------------------------------------------------------------ACAAACGATTTTCATAAT-ATTTACTAATATCTGTTATTTTT--------CACAGCTTCGCGCTTCCCATACTTTTTAAGGGAAGAACAAAGACCTTAGAGCCCASizeHit CountTotal NormTotal
No Reads
droKik1
CCGCC---------CAATCCGCGCGAGTCGGCAGGTATTTTATCCTCGCTAATGTTCTGGTACGCACTATGCT---CCTCTTACT------------------------------------------------------------------------------ACATCCTATCACACG--CTA----------TA------A--GA-ACCATAAG-TG-----------------------------------------------------------------------------------------------------------------ACAC-----CTGCCGCGTTGA---G-AA--------CTGATATCC--GAAGACAAC----TGTTATCGGACACC--A-TATTGTTCGTAGCATAAATAA-CA-ATTGCTGACCATTGCGAAATCGATTTACATAAG-ACC------------TCTTTTCT--------TCCAGCTTTGCCCTGCCCATACTGTTCAAGGGCCGCAAGCAAACGCTCCAGCCCASizeHit CountTotal NormTotal
No Reads
droAna3
CCACC---------AAATCCGCGCGAATCGGCTGGCATATTGTCCTCATTAATGTTCTGGTACGCAA-ATGTT---------CCCGTTAACACAGTGTGTGTGATGTGTGTG--------------------TGT--------G----TGG-------------GGTGTTATCAGATG--CCCATGTATA-------GCTTA--GTACCTTCAAG-TGTCACCTACCG---------------------------------------------------------------------GCCGG-GAGTCTCAATTATAAAAATGTG------ACATCCGAA----ATC--TGA---AATA--------CTGTCATCC--GAAGGCAAC----TGTTATCGGATACGCATTCATTGTTCGTAGAATTATTTA-TA-GTTTCTGTTCGTTGCGAAATTGATTTACATAAT-TCC------------ACTTCTCT--------TCCAGCTTTGCTCTGCCCATTCTGTTCAAGGGGCGGAAGCAAAAGCTCCAAGCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............AAATCCGCGCGAATCGGCTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
..........................................................................................................................................................................ATCAGATG--CCCATGTATA-------GCTTA--..............................................................................................................................................................................................................................................................................................................................................................2312.002000002
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTGTTCAAGGGGCGGAAGC...............2312.002010010
...............AATCCGCGCGAATCGGCTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................ATCCGCGCGAATCGGCTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..................................GCATATTGTCCTCATTAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..ACC---------AAATCCGCGCGAATCGGCTGGCATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.........................................................................................................................................................................TATCAGATG--CCCATGTATA-------GCTTA--GTAC..........................................................................................................................................................................................................................................................................................................................................................2811.001000010
droBip1
CCACC---------CAATCCGCGCGAATCGGCCGGTATATTATCCTCATTAATGTTCTGGTACGCAA-ATGTTT---------CCGTTAACAGTGT--GGGTGATGTGTGTG------------------------------------TGGGGTG-----TGTTGGTGTTATCACATG--CCCATGTATA-------GCTTA--GTACCT---------------------------------------------------------------------------------------GCCGGCGAATCTCAATTATAAAAATGTG------ACATCTGAA----ATC--TGA---AATA--------CTGTCATCC--GAAGACAAC----TGTTATCGGATACGCCTTCATTGTTCGTAGCATTATTTA-TA-GTTTCTGATTGTTGCGAAATTGATTTACATAAT-GCC------------TCTTCTCT--------TCCAGCTTTGCCCTGCCCATTCTTTTCAAGGGACGCAAACAGAGGCTCCAAGCAASizeHit CountTotal NormTotal
No Reads
dp5
CCAAC---------TAATCCCCGCGAGTCGGCAGGTATTTTGTCCTCGCTAATGTTCTGGTATGCAC-AGGTTTTTCA-GTTACCGTTAAGAATGA--AA-TTATATATATGTTTGTGTGTTTATCT--G--TAC--------------GCGCAC-----TGTATATGTTATCACATATGGGAAT--ATGTGATAAAA----AA-TACGTTTAAATT------------------------------------------------------------------------------------------------------------------ACAACAGAAGCGAAGC--TGA---AAAA--------CAGACACCTGAGAAGACAACCAGCTCTTATCG-ATACG--A-TATTGTTCGTAGCATATTTTTGTA-ATTATTCTTGATTGCGAAATAGATTTACATAAGATTC------------TCTC-CGT--------TTCAGCTATGCCCTCCCCATACTGTTCAAGGGGCGGAAAAAGACCCTGCAGCCAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....C---------TAATCCCCGCGAGTCGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................CCCGCGAGTCGGCAGGTATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................GTTATCACATATGGGAAT--ATGT...........................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................AACCAGCTCTTATCG-ATACG--A-T................................................................................................................................................2211.0010000001000
droPer2
CCAAC---------TAATCCCCGCGAGTCGGCAGGTATTTTGTCCTCGCTAATGTTCTGGTATGCAC-AGGTTTTTCA-GTTACCGTTAAGAATGA--AA-TTATATATATGTGTGTGTGTTTATCT--G--TAC--------------GCGCAC-----TGTATATGTTATCACATATGGGAAT--ATGTGATAAAA----AA-TACGTTTAAATT------------------------------------------------------------------------------------------------------------------ACAACAGAAGCGAAGC--TGA---AAAA--------CAGACACCTGAGAAGACAACCAGCTCTTATCG-ATACG--A-TATTGTTCGTAGCATATTTTTGTA-ATTATTCTCGATTGCGAAATAGATTTACATAAGATTC------------TCTC-CGT--------TTCAGCTATGCCCTCCCCATACTGTTCAAGGGGCGGAAAAAGACCCTGCAGCCAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----AATTTAT-TTT------------TCTCTTGT--------TCTAGGTACACTTTGCCTACATTTCTTAAGGGTCGCAAAAGAACATTGGATACCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTTTGCCTACATTTCTTAAGGGT......................2714.00413000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGGTCGCAAAAGAACATTGGA.....2512.00202000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGGTCGCAAAAGAACATTGGA.....2412.00202000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAACATTGGATACCA1911.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGGTCGCAAAAGAACATTGGAT....2511.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTAAGGGTCGCAAAAGAACATTGGA.....2711.00101000
droVir3
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTTGCGCTGCCCATATTGTTCAAGGGCCGCAAGAAAACATTGGAGCCCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCAAGGGCCGCAAGAAAACAT.........2511.001000000000000000000000000000010000000000000000000000000000000000
droMoj3
AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATATCTT-TGT------------TGTTCCA---------TTAAGCTTTGCCATGCCAGTTCTGTTTAAAGGACGGCAAAAGACACTAGAGCAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCTT-TGT------------TGTTCCA---------TTAAGC.................................................2511.001100000
droGri2
AACGCTCGCTATCTCAATATATACGTGTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA------------TCTCTTGTTTCATCCGTAAAGCTTTGCGATGCCCGTTTTGTTTAAGGGTCGCCAGAAAGCACTGGAACAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 11:41 AM