ID:

dsi_17813

 Coordinate:

3r:25929017-25929077 -

 Confidence:

Known Ortholog

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.3 -6.3 -5.9

Flybase annnotation

exon [3r_25928821_25929016_-]; exon [3r_25929078_25929156_-]; CDS [3r_25928821_25929016_-]; CDS [3r_25929078_25929156_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------##################################################
CCCTGGGAGGAATACTCCGAGAACGGACCAAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCA
*****************************************************************..........((.(((((...............))))).)).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 O002
Head
 SRR902009
testis
 M053
female body
 O001
Testis
 SRR902008
ovaries
........................................................................................ATAAAAGTATGCCGAACTCGCAG.................................................. 23 0 1 851.00 851 222 12 262 114 16 99 2 42 48 15 7 10 2 0
........................................................................................ATAAAAGTATGCCGAACTCGC.................................................... 21 0 1 473.00 473 110 78 97 78 10 41 12 23 4 9 1 4 4 2
........................................................................................ATAAAAGTATGCCGAACTCGCA................................................... 22 0 1 414.00 414 79 126 73 25 43 16 26 7 11 4 3 0 1 0
........................................................................................ATAAAAGTATGCCGAACTCG..................................................... 20 0 1 339.00 339 13 211 5 4 21 6 41 29 2 1 6 0 0 0
.........................................................................................TAAAAGTATGCCGAACTCGCAGT................................................. 23 1 1 156.00 156 24 18 13 8 68 7 10 2 4 0 0 2 0 0
.........................................................................................TAAAAGTATGCCGAACTCGCAG.................................................. 22 0 1 131.00 131 46 2 30 22 1 11 3 4 8 1 1 2 0 0
.........................................................................................TAAAAGTATGCCGAACTCGCA................................................... 21 0 1 54.00 54 14 14 10 4 3 2 4 1 1 0 0 1 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCAA.................................................. 23 1 1 45.00 45 9 0 10 21 0 5 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTC...................................................... 19 0 1 32.00 32 0 21 0 0 1 0 2 0 0 6 0 0 2 0
..........................................................................................AAAAGTATGCCGAACTCGCAGT................................................. 22 1 1 31.00 31 4 5 3 0 14 0 1 4 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCAGA................................................. 24 1 1 24.00 24 7 0 9 2 0 1 0 0 0 0 4 1 0 0
.........................................................................................TAAAAGTATGCCGAACTCGCAGA................................................. 23 1 1 21.00 21 8 0 9 1 0 1 0 0 0 0 2 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCAGT................................................. 24 1 1 19.00 19 3 0 2 1 3 0 4 4 1 0 0 1 0 0
.........................................................................................TAAAAGTATGCCGAACTCGC.................................................... 20 0 1 17.00 17 2 8 0 1 1 0 3 0 0 1 0 1 0 0
.........................................................................................TAAAAGTATGCCGAACTCGCAGG................................................. 23 0 1 14.00 14 2 4 0 0 7 0 1 0 0 0 0 0 0 0
.........................................................................................TAAAAGTATGCCGAACTCGCAGC................................................. 23 1 1 13.00 13 0 3 0 0 8 0 2 0 0 0 0 0 0 0
..........................................................................................AAAAGTATGCCGAACTCGCAG.................................................. 21 0 1 13.00 13 6 0 0 0 0 2 0 1 1 1 0 2 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCG................................................... 22 1 1 11.00 11 0 4 0 0 3 0 4 0 0 0 0 0 0 0
.........................................................................................TAAAAGTATGCCGAACTCGCAA.................................................. 22 1 1 9.00 9 2 0 4 2 0 1 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCT................................................... 22 1 1 8.00 8 2 6 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACT....................................................... 18 0 1 8.00 8 0 4 0 1 0 0 0 0 0 1 0 0 2 0
..........................................................................................AAAAGTATGCCGAACTCGCAGA................................................. 22 1 1 5.00 5 3 0 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................TTAATTAATAGGATCGGCC............................................................................. 19 0 1 5.00 5 0 5 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................AATAGGATCGGCCGTTAATAA..................................................................... 21 0 1 4.00 4 0 3 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCAAA................................................. 24 2 1 4.00 4 2 0 0 0 0 2 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCAGC................................................. 24 1 1 4.00 4 0 1 0 0 3 0 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGT.................................................... 21 1 1 3.00 3 0 1 0 0 0 1 0 0 0 0 1 0 0 0
...........................................................GTACACTTAATTAATAGGATCGGCC............................................................................. 25 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
................................................................CTTAATTAATAGGATCGGCC............................................................................. 20 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTATGCCGAACTCG..................................................... 19 0 1 3.00 3 0 0 0 0 0 0 1 0 0 0 1 1 0 0
.........................................................................................TAAAAGTATGCCGAACTC...................................................... 18 0 1 3.00 3 0 1 0 0 0 0 0 0 0 1 0 0 1 0
...............................................................ACTTAATTAATAGGATCGGCC............................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTGG..................................................... 20 2 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
........................................................................ATAGGATCGGCCGTTAATAAAAGT................................................................. 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................AATAGGATCGGCCGTTAATAAAAG.................................................................. 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................AAAAGTATGCCGAACTCGCAGG................................................. 22 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCAGTTA............................................... 26 3 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0
........................................................TTCGTACACTTAATTAATAGGATC................................................................................. 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCAGG................................................. 24 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................AGTATGCCGAACTCGCAGT................................................. 19 1 1 2.00 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0
......................................................................TAATAGGATCGGCCGTTAAT....................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TAATAGGATCGGCCGTTAATAA..................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................AATAAAAGTATGCCGAACTCGCAGC................................................. 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................TAAAAGTATGCCGAACTCGCAGTAA............................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TAGGATCGGCCGTTAATAAAAGTATGC............................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................ATAGGATCGGCCGTTAATAAAAGTAT............................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCT..................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TAATTAATAGGATCGGCCGTTAA........................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................ATAGGATCGGCCGTTAATAAAAG.................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTATGCCGAACTCGAC................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCC..................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAAC........................................................ 17 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCAGAA................................................ 25 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCAGGCG............................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................AAAGTATGCCGAACTCGCA................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................AAAGTATGCCGAACTCGCAG.................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGAGTTTCGTACACTTAATTAATAGGAT.................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................ATTAATAGGATCGGCCGTTAAT....................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTATGCCGAACTCGCT................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTATGCCGAACTCGCAGTT................................................ 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................AAAAGTATGCCGAACTCGCAA.................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCAC.................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCAAAA................................................ 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................ATTAATAGGATCGGCCGT........................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................AATAAAAGTATGCCGAACTC...................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCAT.................................................. 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................TTAATAAAAGTATGCCGAACTCGCAGT................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGAGTTTCGTACACTTAA............................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................GTATGCCGAACTCGCAGT................................................. 18 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................TAATTAATAGGATCGGCC............................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................AATAGGATCGGCCGTTAATAAAAGT................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTATGCCGAACTCGTAG.................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................AAAAGTATGCCGAACTCGCAGC................................................. 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGTT................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGAGTTTCGTACACTTAATTAATAGGA................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................AATAGGATCGGCCGTTAATAAAAGTATGC............................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................AAAAGTATGCCGAACTCGC.................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................ATAGGATCGGCCGTTAATAAAA................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ATAAAAGTATGCCGAACTCGCC................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................AATAGGATCGGCCGTTAATAAAA................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGGACCCTCCTTATGAGGCTCTTGCCTGGTTTCGGGTGGCACGACCTCTCCACTCAAAGCATGTGAATTAATTATCCTAGCCGGCAATTATTTTCATACGGCTTGAGCGTCCGCTGCCTACGCGCTAGTGGTTTCTCAGGACCGGGTGAGCGACCACCCGT
**************************************************..........((.(((((...............))))).)).....***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:25928967-25929127 - dsi_17813 CCCTGGGAGGAATACTCCGAGAACGGACCAAAGCCCACCGTGCTGGAGAGGTGAGTT-TCGTACACTTAATTAATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCA
droSec2 scaffold_4:5435165-5435325 - dse_190 CCCTGGGAGGAATACTCCGAGAACGGACCCAAGCCCACCGTGCTGGAGAGGTGAGTT-TCGTACACTTAATTAATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAAGTTTG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCA
dm3 chr3R:26617308-26617468 - dme-mir-1013 CCCTGGGAGGAATACTCCGAGAACGGACCGAAGCCCACCGTGCTGGAGAGGTGAGTT-TCGTACACTTAATTAATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCA
droEre2 scaffold_4820:1381469-1381629 + der_49 CCCTGGGAGGAATACTCCGAGAACGGACCCAAGCCCACCGTGCTGGAGAGGTGAGTT-TCGTACACTTAATTAATT------GGAG----------------------CGGCC---GTTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCA
droYak3 3R:27538948-27539108 - dya_38 CCCTGGGAGGAGTACTCCGAGAACGGACCCAAGCCCACCGTGCTGGAGAGGTGAGTT-TCGTACACTTAATTAATT------GGGA----------------------CGGCC---GTTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCA
droEug1 scf7180000409679:78741-78894 - CCTTGGGAGGAATACTCGGAAAACGGACCCAGGCCCACAGTGCTGGAAAGGTGAGTT--CATAGACTAAATCAGTA------TGAA----------------------AAGTG---ACTA------------A-----T------ATA--------CCGAATTCGC-------AGGAGACGGATGCGCGATCACCAAAGAGTCTTGGCCCACTCGCTGGTGGGCA
droBia1 scf7180000302113:733251-733410 + CCTTGGGAGGAGTACTCGGAGAACGGAACCAAGCCCACCGTGCTGGAGCGGTGAGTT-TCGTACACTTAGTTAATT------CG-G----------------------AGGCC---ATTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGGCGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCA
droTak1 scf7180000415367:120626-120786 + CCCTGGGAGGAATACTCGGAGAACGGACCCAAGCCCACTGTGCTGGAGAGGTGAGTT-TCGTACACTTAATTAATA------TGGA----------------------AAGCC---ATTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCA
droEle1 scf7180000491280:2970936-2971096 - CCGTGGGAGGAATACTCGGAGAACGGACCCAAGCCCACAGTGCTGGAGAGGTGAGTT-TCGTACGCTTAATTAATA------AATG----------------------AAGCA---ATTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCA
droRho1 scf7180000774800:24982-25142 - CCTTGGGAGGAATACTCGGAGAACGGACCCAAGCCCACAGTGCTGGAGAGGTGAGTT-TCGTACACTTAATTAATA------AAGG----------------------AAGCC---ATTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCA
droFic1 scf7180000453782:677578-677741 + CCCTGGGAGGAATACTCGGAGAACGGGCCCAGACCCACGGTTCTGGAGCGGTGAGTT-TCGTACACTTAATTAATA------CAAGA-A--G----------------CGGGG---ATTA------------A-----TAAAAGTATG--------TCGAACTCGC-------AGGCGGCGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCCCTGGTGGGCA
droKik1 scf7180000302390:601125-601294 - CCTTGGGAGGAATACTCGGAGAATGGACCCAAGCCCACGGTGCTGGAAAGGCGAGTT-TTGTATATTTAATTAATTTTCAAAGTAT----------------------CGTTCATAATTA------------A-----TAAAAGTATG--------CTGAACTCGC-------AGGCGGCGAATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCA
droAna3 scaffold_12911:4366236-4366391 + CCTTGGGAGGAATACTCGGAGAACGGTCCAAAGCCCACTGTGCTGGAGAGGTAATCT-TTGAATAATTATCTGTGA------GTTG----------------------TGGCA---TCTA------------A-----TGATTGTT-------------ATCTTCC-------AGACGTCGCATGCGTGATCACCAAAGAGTCCTGGCCCACTCCCTAGTGGGCA
droBip1 scf7180000396640:1207081-1207234 + CCTTGGGAGGAATACTCGGAGAACGGTCCAAAGCCCACAGTGCTGGAGCGGTAAGTT-GGAGGAA--TGCCTATGA------G-------------------TCACG---TC--------------------ATGTACTGA-----TC--------TTTATCTTCC-------AGACGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCCCTAGTGGGCA
dp5 2:577055-577219 + CCCTGGGAGGATTACTCGGAGAATGGACCCAAACCCACTGTGCTGGAGCGGTAAGTCC-----------A---TGA------A---TTGC----------------ATCCCCC---TTT-GATTATTCTTTA-------ATCTGGAAATCC---CTGTGATCCCAT-------AGACGACGGATGCGCGATCACCAAAGAGTTTTGGCCCACTCGCTGGTGGGGA
droPer2 scaffold_7:3361239-3361403 + CCCTGGGAGGATTACTCGGAGAATGGACCCAAACCCACTGTGCTGGAGCGGTAAGTCC-----------A---TGA------A---TTGC----------------ATCCCCC---TTT-GATTATTCTTTA-------ATCTGGAAATCC---CTGTGATCCCAT-------AGACGACGGATGCGCGATCACCAAAGAGTTTTGGCCCACTCGCTGGTGGGGA
droWil2 scf2_1100000004943:10168396-10168555 - CCTTGGGAGGACTTCTCTGAAAATGGTTCAAGGCCAACTGTATTAGAAAGGTATAAT-GAATAAACCAATTTGAAT------AG-C----------------------AAACC---ATTA------------A-----ATCAATTTCC--------TTTTTTGTCT-------AGACGACGTATGCGTGATCATCAAAGAGTTTTGGCCCATTCACTGGTCGGTA
droVir3 scaffold_13047:11434893-11435063 - dvi_16485 CCTTGGGAAGACTTTTCGGAGAACGGCACCAAGCCCACAGTGCTGGAGAGGTGGGTG--CATCCACATCAGCTGC------------------------------------------TT-GATAACCATTTG------TAAATGTAAATCCTCC--TTTAACTCG-TTTGAACAGGCGACGCATGCGCGATCATCAAAGAGTCCTGGCACACTCGCTAGTCGGCA
droMoj3 scaffold_6540:30312653-30312822 + CCGTGGGAGGACTTTTCAGAGAATGGCACCAAGCCCACAGTGCTGGAGAGGTGGGAGC-----------A---TTG------A---TTTCACCACCCATAAGACACA----------------------TTC------TCACAGTTTTTCTTGC--T-TAATTCC-TTTGTACAGGCGGCGCATGCGCGATCACCAAAGAGTCCTGGCGCACTCGCTGGTCGGCA
droGri2 scaffold_14624:1473527-1473700 - CCGTGGGAGGATAATTCGGAGAATGGTCCAAAGCCCACAGTGCTGGAAAGGTGATTC----------------------------A------AATCCATAAGCCACAATCTTC---T-T-AAATATTATTTT-------CGCTAATGCTAT-----TTGTACTCGCTTTGATTAGGCGTCGCATGCGGGATCATCAAAGAGTGCTGGCGCATTCGCTGGTCGGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCCTGGGAGGAATACTCCGAGAACGGACCAAAGCCCACCGTGCTGGAGAGGTGAGTT-TCGTACACTTAATTAATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCGC-------AG..................................................231851.00851122161021522226211499424807
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCGC-------....................................................211473.0047378121044911097784123421
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCGC-------A...................................................221414.0041412626430147973251671103
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCG............................................................201339.0033921141210011354629206
..........................................................................................................................................TAAAAGTATG--------CCGAACTCGC-------AG..................................................221131.00131231201463022114801
..........................................................................................................................................TAAAAGTATG--------CCGAACTCGC-------A...................................................21154.005414431001410421100
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTC.............................................................19132.0032212102600000000
..........................................................................................................................................TAAAAGTATG--------CCGAACTCGC-------....................................................20117.001783110120100000
..........................................................................................................................................TAAAAGTATG--------CCGAACTCGC-------AGG.................................................23114.001441700020000000
...........................................................................................................................................AAAAGTATG--------CCGAACTCGC-------AG..................................................21113.001300020160021100
....................................................................................................................................A-----TAAAAGTATG--------CCGAACT..............................................................1818.00840002100100000
..................................................................TTAATTAATA------GGAT----------------------CGGCC---.............................................................................................................1915.00550000000000000
........................................................................AATA------GGAT----------------------CGGCC---GTTA------------A-----TAA....................................................................................2114.00430000000000001
............................................................GTACACTTAATTAATA------GGAT----------------------CGGCC---.............................................................................................................2513.00330000000000000
.................................................................CTTAATTAATA------GGAT----------------------CGGCC---.............................................................................................................2013.00330000000000000
..........................................................................................................................................TAAAAGTATG--------CCGAACTCG............................................................1913.00301010000000001
..........................................................................................................................................TAAAAGTATG--------CCGAACTC.............................................................1813.00310001100000000
................................................................ACTTAATTAATA------GGAT----------------------CGGCC---.............................................................................................................2112.00220000000000000
.........................................................................ATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAAGT................................................................................2412.00220000000000000
........................................................................AATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAAG.................................................................................2412.00210000010000000
...........................................................................................................................................AAAAGTATG--------CCGAACTCGC-------AGG.................................................2212.00200200000000000
........................................................T-TCGTACACTTAATTAATA------GGAT----------------------C....................................................................................................................2412.00220000000000000
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCGC-------AGG.................................................2412.00210100000000000
.......................................................................TAATA------GGAT----------------------CGGCC---GTTA------------A-----T......................................................................................2011.00110000000000000
.......................................................................TAATA------GGAT----------------------CGGCC---GTTA------------A-----TAA....................................................................................2211.00101000000000000
..........................................................................TA------GGAT----------------------CGGCC---GTTA------------A-----TAAAAGTATG--------C....................................................................2711.00100100000000000
.........................................................................ATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAAGTAT..............................................................................2611.00101000000000000
...................................................................TAATTAATA------GGAT----------------------CGGCC---GTTA------------A-----.......................................................................................2311.00110000000000000
.........................................................................ATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAAG.................................................................................2311.00110000000000000
....................................................................................................................................A-----TAAAAGTATG--------CCGAAC...............................................................1711.00100000000000001
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCGC-------AGGCG...............................................2611.00100001000000000
............................................................................................................................................AAAGTATG--------CCGAACTCGC-------A...................................................1911.00100000000001000
............................................................................................................................................AAAGTATG--------CCGAACTCGC-------AG..................................................2011.00100000010000000
..................................................GTGAGTT-TCGTACACTTAATTAATA------GGAT----------------------.....................................................................................................................2911.00100000001000000
.....................................................................ATTAATA------GGAT----------------------CGGCC---GTTA------------A-----T......................................................................................2211.00110000000000000
.....................................................................ATTAATA------GGAT----------------------CGGCC---GT...........................................................................................................1811.00100000100000000
.......................................................................................................................A------------A-----TAAAAGTATG--------CCGAACTC.............................................................2011.00100100000000000
..................................................GTGAGTT-TCGTACACTTAA...........................................................................................................................................................1911.00100000100000000
...................................................................TAATTAATA------GGAT----------------------CGGCC---.............................................................................................................1811.00110000000000000
........................................................................AATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAAGT................................................................................2511.00100000010000000
..................................................GTGAGTT-TCGTACACTTAATTAATA------GGA............................................................................................................................................2811.00100000001000000
........................................................................AATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAAGTATG--------C....................................................................2911.00100000001000000
...........................................................................................................................................AAAAGTATG--------CCGAACTCGC-------....................................................1911.00100000100000000
.........................................................................ATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAA..................................................................................2211.00110000000000000
........................................................................AATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAA..................................................................................2311.00110000000000000
droSec2
CCCTGGGAGGAATACTCCGAGAACGGACCCAAGCCCACCGTGCTGGAGAGGTGAGTT-TCGTACACTTAATTAATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAAGTTTG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................A-----TAAAAGTTTG--------CCGAACTCGC-------....................................................211197.0019725714223
....................................................................................................................................A-----TAAAAGTTTG--------CCGAACTCGC-------AG..................................................23196.0096817413
....................................................................................................................................A-----TAAAAGTTTG--------CCGAACTCG............................................................20133.0033131811
..........................................................................................................................................TAAAAGTTTG--------CCGAACTCGC-------AG..................................................22131.003162212
....................................................................................................................................A-----TAAAAGTTTG--------CCGAACTCGC-------A...................................................22120.002030125
..........................................................................................................................................TAAAAGTTTG--------CCGAACTCGC-------A...................................................2119.0092142
...........................................................................................................................................AAAAGTTTG--------CCGAACTCGC-------AG..................................................2113.0030021
..........................................................................................................................................TAAAAGTTTG--------CCGAACTCGC-------....................................................2013.0031011
....................................................................................................................................A-----TAAAAGTTTG--------CCGAACTC.............................................................1912.0020002
...............................AGCCCACCGTGCTGGAGAGG..............................................................................................................................................................................2011.0010100
..................................................GTGAGTT-TCGTACACTTAATT.........................................................................................................................................................2111.0010001
.............................................................................................................................................AAGTTTG--------CCGAACTCGC-------AG..................................................1911.0010010
..............................AAGCCCACCGTGCTGGAGAGG..............................................................................................................................................................................2111.0011000
.........................................................................ATA------GGAT----------------------CGGCC---GTTA------------A-----TAAAAGTTTG--------.....................................................................2711.0010100
........................................................................AATA------GGAT----------------------CGGCC---GTTA------------A-----.......................................................................................1811.0010001
droEre2
CCCTGGGAGGAATACTCCGAGAACGGACCCAAGCCCACCGTGCTGGAGAGGTGAGTT-TCGTACACTTAATTAATT------GGAG----------------------CGGCC---GTTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCGC-------A...................................................221573.00573627181173402
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCGC-------....................................................211418.00418903813875194
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCGC-------AG..................................................231352.0035242214539250
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCG............................................................201194.00194361926383
..........................................................................................................................................TAAAAGTATG--------CCGAACTCGC-------AG..................................................22164.006413033342
..........................................................................................................................................TAAAAGTATG--------CCGAACTCGC-------A...................................................21122.0022810076
..........................................................................................................................................TAAAAGTATG--------CCGAACTCGC-------....................................................20110.0010711001
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTC.............................................................1914.004100003
..........................................................................................................................................TAAAAGTATG--------CCGAACTCG............................................................1914.004200020
....................................................................................................................................A-----TAAAAGTATG--------CCGAACT..............................................................1812.002000002
............................................................................................................................................AAAGTATG--------CCGAACTCGC-------AG..................................................2012.002000101
..........................................................................TT------GGAG----------------------CGGCC---GTTA------------A-----TAAA...................................................................................2011.001000001
..........................................................................................................................................TAAAAGTATG--------CCGAACTC.............................................................1811.001100000
..................................................................TTAATTAATT------GGAG----------------------CGGC.................................................................................................................1811.001000001
...........................................................................T------GGAG----------------------CGGCC---GTTA------------A-----TAAAAGTATG--------CCG..................................................................2811.001000010
........................................................................AATT------GGAG----------------------CGGCC---GTTA------------A-----TAAAA..................................................................................2311.001000010
..............................................................................................................GCC---GTTA------------A-----TAAAAGTATG--------CCGAACTCGC-------A...................................................2911.001100000
............................................................................................................................................AAAGTATG--------CCGAACTCGC-------A...................................................1911.001000100
...................................................TGAGTT-TCGTACACTTAATT.........................................................................................................................................................2011.001100000
..................................................GTGAGTT-TCGTACACTTAATT.........................................................................................................................................................2111.001000001
.............................................................................................................................................AAGTATG--------CCGAACTCGC-------AG..................................................1911.001000001
droYak3
CCCTGGGAGGAGTACTCCGAGAACGGACCCAAGCCCACCGTGCTGGAGAGGTGAGTT-TCGTACACTTAATTAATT------GGGA----------------------CGGCC---GTTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCGC-------....................................................211435.0043561692421403514
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCGC-------A...................................................221278.002781562630190416
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCG............................................................201192.001921023122202114
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTCGC-------AG..................................................23180.008071318180231
..........................................................................................................................................TAAAAGTATG--------CCGAACTCGC-------A...................................................21148.0048121365075
..........................................................................................................................................TAAAAGTATG--------CCGAACTCGC-------AG..................................................22140.0040415640101
..........................................................................................................................................TAAAAGTATG--------CCGAACTCGC-------....................................................20128.002814840002
....................................................................................................................................A-----TAAAAGTATG--------CCGAACTC.............................................................19113.001312001000
...........................................................................................................................................AAAAGTATG--------CCGAACTCGC-------AG..................................................2116.0060301011
..........................................................................................................................................TAAAAGTATG--------CCGAACTCG............................................................1915.0054100000
..............................................................ACACTTAATTAATT------GGGA----------------------CGGCC---GTT..........................................................................................................2612.0020200000
...........................................................................................................................................AAAAGTATG--------CCGAACTCGC-------....................................................1912.0020010010
..................................................GTGAGTT-TCGTACACTTAATT.........................................................................................................................................................2112.0020010010
..................................................GTGAGTT-TCGTACACTTAATTAATT------GGGA----------------------C....................................................................................................................3011.0010000001
........................................................................AATT------GGGA----------------------CGGCC---GTTA------------A-----TAAAAGTATG--------C....................................................................2911.0010000001
.............................................................................................................................................................................................ATCACCAAAGAGTCCTGGC.................1911.0010000010
..........................................................................................................................................TAAAAGTATG--------CCGAACTCGC-------AGG.................................................2311.0011000000
..................................................GTGAGTT-TCGTACACTTAAT..........................................................................................................................................................2011.0010010000
.......AGGAGTACTCCGAGAACGGACCCAAGC...............................................................................................................................................................................................2711.0010000001
....................................................................................................................GTTA------------A-----TAAAAGTATG--------CCGAACT..............................................................2211.0010100000
droEug1
CCTTGGGAGGAATACTCGGAAAACGGACCCAGGCCCACAGTGCTGGAAAGGTGAGTT--CATAGACTAAATCAGTA------TGAA----------------------AAGTG---ACTA------------A-----T------ATA--------CCGAATTCGC-------AGGAGACGGATGCGCGATCACCAAAGAGTCTTGGCCCACTCGCTGGTGGGCASizeHit CountTotal NormTotal
No Reads
droBia1
CCTTGGGAGGAGTACTCGGAGAACGGAACCAAGCCCACCGTGCTGGAGCGGTGAGTT-TCGTACACTTAGTTAATT------CG-G----------------------AGGCC---ATTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGGCGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCASizeHit CountTotal NormTotal
No Reads
droTak1
CCCTGGGAGGAATACTCGGAGAACGGACCCAAGCCCACTGTGCTGGAGAGGTGAGTT-TCGTACACTTAATTAATA------TGGA----------------------AAGCC---ATTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCASizeHit CountTotal NormTotal
No Reads
droEle1
CCGTGGGAGGAATACTCGGAGAACGGACCCAAGCCCACAGTGCTGGAGAGGTGAGTT-TCGTACGCTTAATTAATA------AATG----------------------AAGCA---ATTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCASizeHit CountTotal NormTotal
No Reads
droRho1
CCTTGGGAGGAATACTCGGAGAACGGACCCAAGCCCACAGTGCTGGAGAGGTGAGTT-TCGTACACTTAATTAATA------AAGG----------------------AAGCC---ATTA------------A-----TAAAAGTATG--------CCGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCASizeHit CountTotal NormTotal
No Reads
droFic1
CCCTGGGAGGAATACTCGGAGAACGGGCCCAGACCCACGGTTCTGGAGCGGTGAGTT-TCGTACACTTAATTAATA------CAAGA-A--G----------------CGGGG---ATTA------------A-----TAAAAGTATG--------TCGAACTCGC-------AGGCGGCGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCCCTGGTGGGCASizeHit CountTotal NormTotal
No Reads
droKik1
CCTTGGGAGGAATACTCGGAGAATGGACCCAAGCCCACGGTGCTGGAAAGGCGAGTT-TTGTATATTTAATTAATTTTCAAAGTAT----------------------CGTTCATAATTA------------A-----TAAAAGTATG--------CTGAACTCGC-------AGGCGGCGAATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCASizeHit CountTotal NormTotal
No Reads
droAna3
CCTTGGGAGGAATACTCGGAGAACGGTCCAAAGCCCACTGTGCTGGAGAGGTAATCT-TTGAATAATTATCTGTGA------GTTG----------------------TGGCA---TCTA------------A-----TGATTGTT-------------ATCTTCC-------AGACGTCGCATGCGTGATCACCAAAGAGTCCTGGCCCACTCCCTAGTGGGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........AATACTCGGAGAACGGTCCAAAGCCCACT..........................................................................................................................................................................................2911.001010000
.................................................................................................................................................................................................CCAAAGAGTCCTGGCCCACTCCC.........2311.001000001
droBip1
CCTTGGGAGGAATACTCGGAGAACGGTCCAAAGCCCACAGTGCTGGAGCGGTAAGTT-GGAGGAA--TGCCTATGA------G-------------------TCACG---TC--------------------ATGTACTGA-----TC--------TTTATCTTCC-------AGACGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCCCTAGTGGGCASizeHit CountTotal NormTotal
No Reads
dp5
CCCTGGGAGGATTACTCGGAGAATGGACCCAAACCCACTGTGCTGGAGCGGTAAGTCC-----------A---TGA------A---TTGC----------------ATCCCCC---TTT-GATTATTCTTTA-------ATCTGGAAATCC---CTGTGATCCCAT-------AGACGACGGATGCGCGATCACCAAAGAGTTTTGGCCCACTCGCTGGTGGGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............CTCGGAGAATGGACCCAAACC..............................................................................................................................................................................................2111.0010010000000
.........................GACCCAAACCCACTGTGCT.....................................................................................................................................................................................1911.0010100000000
..............CTCGGAGAATGGACCCAAACCCAC...........................................................................................................................................................................................2411.0010010000000
droPer2
CCCTGGGAGGATTACTCGGAGAATGGACCCAAACCCACTGTGCTGGAGCGGTAAGTCC-----------A---TGA------A---TTGC----------------ATCCCCC---TTT-GATTATTCTTTA-------ATCTGGAAATCC---CTGTGATCCCAT-------AGACGACGGATGCGCGATCACCAAAGAGTTTTGGCCCACTCGCTGGTGGGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........ATTACTCGGAGAATGGACCCAAAC...............................................................................................................................................................................................2413.003300000
..........ATTACTCGGAGAATGGACCCA..................................................................................................................................................................................................2111.001100000
droWil2
CCTTGGGAGGACTTCTCTGAAAATGGTTCAAGGCCAACTGTATTAGAAAGGTATAAT-GAATAAACCAATTTGAAT------AG-C----------------------AAACC---ATTA------------A-----ATCAATTTCC--------TTTTTTGTCT-------AGACGACGTATGCGTGATCATCAAAGAGTTTTGGCCCATTCACTGGTCGGTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CCTTGGGAAGACTTTTCGGAGAACGGCACCAAGCCCACAGTGCTGGAGAGGTGGGTG--CATCCACATCAGCTGC------------------------------------------TT-GATAACCATTTG------TAAATGTAAATCCTCC--TTTAACTCG-TTTGAACAGGCGACGCATGCGCGATCATCAAAGAGTCCTGGCACACTCGCTAGTCGGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body
............TTTTCGGAGAACGGCACCAAGCC..............................................................................................................................................................................................2312.00202000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................ATGCGCGATCATCAAAGA.........................1811.00100000000000000000000000000000000000010000000000000000000000000
...........CTTTTCGGAGAACGGCAC....................................................................................................................................................................................................1811.00110000000000000000000000000000000000000000000000000000000000000
droMoj3
CCGTGGGAGGACTTTTCAGAGAATGGCACCAAGCCCACAGTGCTGGAGAGGTGGGAGC-----------A---TTG------A---TTTCACCACCCATAAGACACA----------------------TTC------TCACAGTTTTTCTTGC--T-TAATTCC-TTTGTACAGGCGGCGCATGCGCGATCACCAAAGAGTCCTGGCGCACTCGCTGGTCGGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CCGTGGGAGGATAATTCGGAGAATGGTCCAAAGCCCACAGTGCTGGAAAGGTGATTC----------------------------A------AATCCATAAGCCACAATCTTC---T-T-AAATATTATTTT-------CGCTAATGCTAT-----TTGTACTCGCTTTGATTAGGCGTCGCATGCGGGATCATCAAAGAGTGCTGGCGCATTCGCTGGTCGGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 10/12/2014 at 07:28 PM