ID:

dsi_17808

 Coordinate:

3l:21146355-21146607 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.7 -32.5 -32.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

ATATAAAGTTTGCGATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGACAGGTAAGTAGAAAACTATAAAAAGTCAAGTATTTTATGTGAATATCTATGTTAGGCAATAAATTCATTATATATAAAGTAATTTAATTAACTGCAGTACATAACAAGTATTTACCGACATTAAAATAAGTTCAGAATTTAAATCTTCATTAAGTGTTTAATTATTTTTTTTTAATATATTTCCCTCTAAATTTGCCGGATGACATACTTAGTGACTTTATCTTTTCGCTGACTTACAGAACGTATTCACTTACAGAACAATGGGAACAGCGGTGAGGAATTTGCGGGTTGTGGTCATCTGTACAC
**************************************************((((((.(((.((......((((((.((.......((((((((.(((((...(((...((((.(((((.......)))))..))))...)))...)))))....))))))))..................((((..((((...(((((((((((...(((.......((((.............)))).......)))...))))))))))).))))..)))).)))))))).......)).)))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 O001
Testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.............................TTGTTTCGGGTGTACAGGCAG............................................................................................................................................................................................................................................................................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................GCGGTGAGGAATTTGCGGGTTT............... 22 1 1 2.00 2 2 0 0 0 0 0 0
............................GTTGTTTCGGGTGTACAGGCA................................................................................................................................................................................................................................................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTTCCCTCTAAATTTGCCGGA.......................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TGAGGAATTTGCGGGTTGTG............. 20 0 1 1.00 1 1 0 0 0 0 0 0
.............................TTGTTTCGGGTGTACAGGCAT............................................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TACAGAACAATGGGAACAGCG.................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
......................................GTGTACAGGCAGGTAAGTAGG...................................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
...........................TGTTGTTTCGGGTGTACAGGTT................................................................................................................................................................................................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................TGCCGGATGACATACTTAGTG............................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................TTTGCCGGATGACATGCTTAG.............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TGACATACTTAGTGACTT........................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................CCGGATGACATACTTAGTGAC.......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................AGCGGTGAGGAATTTGCGGGT................. 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................AGGAATTTGCGGGTTGTTAT........... 20 2 1 1.00 1 1 0 0 0 0 0 0
...........................TGTTGTTTCGGGTGTACAGGCT................................................................................................................................................................................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................AACAATAGGATCCGCGGTGA.............................. 20 3 2 0.50 1 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................................................................................TGAGGAATTTGCAGATTGTGCT........... 22 3 3 0.33 1 0 0 0 0 1 0 0
...................................................CAAGTAGAATACGATAAAAAG......................................................................................................................................................................................................................................................................................... 21 3 8 0.25 2 0 0 0 2 0 0 0
...............................GTTTCGTGTGAACAGACA................................................................................................................................................................................................................................................................................................................ 18 2 4 0.25 1 0 0 0 0 0 1 0
.........................................TACAGGCAGGTAAGTAGGAT.................................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................TTGATTCGTTTTTTTTAATATATT............................................................................................................................. 24 3 8 0.13 1 0 0 0 0 0 0 1
......................................................GTAGAATACGATAAAAAG......................................................................................................................................................................................................................................................................................... 18 2 11 0.09 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GATTTTGTGGGTTGTGGT........... 18 2 17 0.06 1 0 1 0 0 0 0 0
.......................TCCTTCTTGTCTCGGGTGT....................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

TATATTTCAAACGCTATTTCACAAGGCACAACAAAGCCCACATGTCTGTCCATTCATCTTTTGATATTTTTCAGTTCATAAAATACACTTATAGATACAATCCGTTATTTAAGTAATATATATTTCATTAAATTAATTGACGTCATGTATTGTTCATAAATGGCTGTAATTTTATTCAAGTCTTAAATTTAGAAGTAATTCACAAATTAATAAAAAAAAATTATATAAAGGGAGATTTAAACGGCCTACTGTATGAATCACTGAAATAGAAAAGCGACTGAATGTCTTGCATAAGTGAATGTCTTGTTACCCTTGTCGCCACTCCTTAAACGCCCAACACCAGTAGACATGTG
**************************************************((((((.(((.((......((((((.((.......((((((((.(((((...(((...((((.(((((.......)))))..))))...)))...)))))....))))))))..................((((..((((...(((((((((((...(((.......((((.............)))).......)))...))))))))))).))))..)))).)))))))).......)).)))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............................................................................................................................................................................................................................................................................AAGCGTCCGAATGTCTTGC............................................................... 19 2 2 2.00 4 2 2 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................AGCGTCCGAATGTCTTGC............................................................... 18 2 3 1.33 4 0 2 0 1 0 0 1 0
...........................................................................................................................................................ATAAATGGCTGTAATTTTAT.................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0
.......................AGGCACAACAAAGCCCACATGTCTGT................................................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................ACAACAAAGCCCACATGTCTGTCCATT........................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0
..TATTTCAAACGCTATTTCACAAG........................................................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................AGCCCACATGTCTGTCCATTCATCCTT.................................................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................ATGTCTTGCATAAGTGAATG.................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................AAGCGTCTGAATGTCTTG................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................CATAAATGGCTGTAATTTTAT.................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................GTGAATGTCTTGTTACCC......................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................AAGCGTCTGAATGTCT.................................................................. 16 1 2 0.50 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................AAGTGTCTGAATGTCTTGC............................................................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................GAAGCGTCCGAATGTCTTGC............................................................... 20 3 4 0.50 2 0 0 0 0 1 0 1 0
...............................................................................................................................................................................................................................................................................AAGTGTCTGAATGTCTTGCT.............................................................. 20 3 5 0.20 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................CGTCCGAATGTCTTGC............................................................... 16 2 20 0.20 4 0 3 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................AAGCGTCCGAATGTCTTGCG.............................................................. 20 3 5 0.20 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................GCGTCTGAATGTCTTGCGA............................................................. 19 3 17 0.18 3 3 0 0 0 0 0 0 0
.............................ACCAAAGCCCACATG..................................................................................................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 1 0
.............................ACCAAAGCCCAGATGT.................................................................................................................................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:21146305-21146657 - dsi_17808 ATATAAAGTTTGCGATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGACAGGTAAGTAGAAAACTATAAAAAGT-CAA-GTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATGTGAATATCTATGTTAGGCAA-----TA-------------------------------AATTCATTATATATAAAGTAATTTAATTA-ACTGCAGTACATAACAAGTATTTACCG--------------ACATTAAAATAAGTT-----CAGAATTTAAATCTTC----ATTAAGT------------------GTTTAATTATTT-----------------------------------T-------TTT---TTAATATATTTCCCT-----CT-------AAATTTGC--------------------------CGGATGACATACTTAGTGACTTTATCTTTTCG--CTG-------ACTTACAGAACGTATTCACTTACAGAACAATGGGAACAGCGGTGAGGAATTTGCGGGTTGTGGTCATCTGTACAC
droSec2 scaffold_11:1549057-1549409 - ATATAAAGTTTGCGATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGGCAGGTAAGTAGGAAACTATAAAAAAGTCAA-GTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCATGTGAATATCTATGTTGAGCAA-----TAT-------------------------------ATTCATTATATATAAAGTAATTCAATTA-ACTGCAGTACATAAGAAGTATTTACCG--------------ACATTAAAATAAGTT-----CAGAATTTAAATCTTC----ATTAAGT------------------GTTTAATTAT-T-----------------------------------T-------TTT---TTAATATATTTCCCT-----CT-------AAATTTGC--------------------------CGGATGACATACTTAGTGACTTTATCTTTTCG--CTG-------ACTTACAGAACGTATTCACTTACAGAACAATGGGAACAGCGGTGAGGAATTTGCGGGTTGTGGTCATCTGTACAC
dm3 chr3L:21628818-21629148 - ATATAAAGTTTGGGATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGACAGGTAAGTAGGAAACTATAAAAAAATCAA-TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCA--TGAGTTTCTATGTTAGGCAT-----TAT----------ATGGTAGCAATTACATTACTAGTTC-------------------AATTAAACTGCAGTACATAAAAAGTATTTATTGAAATACTTTGATCAACATTAAAACAAGTT-----TAGAATTTAAGTCTTC----ATTTAGT-----------------------TTTAATT-----------------------------------T-------TTT---TAAATAAAAACCCAC-----CT-------ATATT-----------------------------------------------------------GG--CCG-------ACTTTCAGTACGTATTCACTTACAGAACAATGGGAACAGCTGTGAGGAACTTGCGCGTTGTGGTCATCTGTACCC
droEre2 scaffold_4784:21283713-21283988 - ATATAAAGTTTGCAATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGGCAGGTAAGTAGGAAACTATAAAAGAG-ACG-G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATGTTATGTGATTTTTTATATCAGACCA-----TATAATGTCTGGTAAGGTAGAACTTACATTGCTAATTCATTAAAT-------------------------------------------------------------------------------------TTAAGTATGC----ATATCA-----------------------AATTAATT-----------------------------------T-------ATT---TTAATAAATTTCCCA-----C---------------------------------------------------------------------------CACT-------ACATTCAATAAGTATTCACTTACAGAACAATGGGAACAGCGGTGAGGAACTTGCGGGTCGTAGTCATCTGCACCC
droYak3 3L:18882344-18882717 + ATATAAAGTTAGCAATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGGCAGGTAAGTAGGAAACTAAAAAAGAG-CGA-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATTTGTATATTATGCATTTGATTAT----------ACGGTAG---TTAGATTATTAATTCATTATTCAT--------------------------ATAGAAAATATTTACCG--------------AAATTAAAGTGAGTGATGATGAAAATTTA--------------------AAATTAAAATACAATTTTT----TAATAAA-----------------------------------T----TTGT---TTAATACATTTTTTA-----CT-------ATATTTGAATCCCAATTAACTTGTTACTTCAAATTGAATTCCATAACTAGGAACTTAATCTGTTCC--CTG-------ACTTCCAAGGCGTATTAACTTACAGAACAATGGGAACAGCCGTGAGGAACTTGCGGGTTGTGGTCATCTGCACCC
droEug1 scf7180000409472:453198-453499 - ATATAAAGTTCGCTATAAAGTGTTCCGTATTGTTCCTGGTATACAAGCAAGTAAGCAAGAATCTATAAATGAT-AAAACGATAATAAAA---------------------------------------------------------------------------------------------------------------------------------TGATTACATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATA--------------------AGTACTGAAAATTCATTATAT----GATTTAGAATTAATACTCCTTT-----A------------------------------T---ATGGC-AAATCTTTTAAAATTTTATATAATTTATAAT-----------TATAAACTT-TTTTCATAACTCAAAGTTTTTTTCCTCCT--TTA-------ACTAAAAAATAGCGTGCACTTACAGCACAATAGGGACGGCGGTGAGAAACCGGCGGGTTGTGGTCATTTGCACGC
droBia1 scf7180000302377:1683655-1684115 + ATACAAAATTTGCTATAAAGTGTTCCGTGTTGTTCCGTGTGTACAGGCAGGTAAGTAGGAATCTATAAAAACA-ATA-GTATTACACAAATGTA---------------TTTAGATTCAGTAGAGGTTTTTGGTTTGGTACTTTCATG-GCTCTCTATAATTACT-----------------------------------------------------------------------TAAACAACAAGATATGGTAAAA---------------------------------------------A----------------------------------------------------------------------------------------------------C----AAACATAAATAGTATTTAATTAATG----------ATATTCAAATCTACT-----TCAATTTAAAATGTTGCAGAATCAAGTGTGAACTTAAATTCATTTTGA----TTTCGAA--CCTAGGTTC----GCTTTACAAATATTATGTATTTTCGGATGATTTTAGCGCGGTGTCGGAACCTATTGGAATTTAATGTAAATTGGCACT---T-GACTC--------------TACTTCTAGGCACTTC-------CACC--ATCGTTTGCCCTA-ACACGGAAGGCACTTACAGCACAATAGGAACGGCGGTGAGAAACTTGCGGGTTGTGGTCATTTGCACTC
droTak1 scf7180000415388:336741-337191 - ATATAAAGTTTGCTATAAAGTGTTCCGTATTGTTCCGGGTGTACAGGCAAGTAAGTAGGAATCTATGAAAGGA-AAA-GAATCGTACAGATGTA---------------TTTATAAACAGTAAAGAGATTAGTTTTTATACTTTTGTGTGGGCTCTATAAATAAATTTACAGCAACATTCTTATGGAGTACTATGTTAAAACAATTCTAATGCCCGATTGATCACATCATGACCTAAGGCCAAAAAA------GACCCATCTTAC----------------------------------------------------------------------------------------------------------------CATTGATTATGGAGTT--------------------------------------------------------------------GTTTATTATG--------------------GGGAATTAAAATTCATTTTAT----TATTTAG-----------------------------------C----TGGGACATTCATACAGTTTCTAAACTGAT-------AAATGTAAATCAAAACTAAAT-GACTCTTCAGAC-----------TCTAGAGGTTTA-------AACG--GGCCTTTAACTTA-------GATGCACTTACAGCACAATGGGAACGGCGGTGAGAAACTTGCGTGTTGTGGTCATCTGCACTC
droEle1 scf7180000491199:1278576-1278685 + ATATAAAGTTCGCAATGAAGTGTTCTGTGTTGTTCCGGGTATACAAGCAAGTAAGTAGGAATCTGTAAAAACA-AAT-TCGTTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAATTCAGTT------------------------------------------------------------------------------------TCAACGATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT-------------------------------------------------------
droRho1 scf7180000779910:26689-26920 + ATATAAAGTTCGCTATGAAGTGTTCTGTGTTGTTTCGGGTGTACAAGCAAGTAAGTAGGAAACTGTAAAAACA-AAA-TCGTTATAAAATTATG---------------ATCA-----------------------------------------TTAT-ATTTTA-----------------------------------------------------------------------TGAATAAAAAGAGATGGAAATAATCTTATTGTTTGCCAGCACTTTCTCAAAGACCGTTTACTGGGTAA----------------------------------------------------------------------------------------------------T----GAATTTAATGAGTAATTA-----------------------------------------ATTTAATT---------------------------------A----ATTATTTAA-----------------------------------------TTT---TTAATACTTTTCTTT-----GT-------A--------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453831:463608-463905 - ATATGAAGTTCGCTATAAAGTGTTCCGTGTTGTTCCGTGTGTACAAGCAAGTAAGTAAAAATCTAAAGAAGAA-A-T-TCGTTGTATTTAAATGAAATGTTAAAATGTATT--------G-GAAG-------------------------------------------------AAAT---------------------------------------------------------------------------------TCGTTCTGTTT-----------------------TCACTATGTGTTGTA-----TA-----------------------------------------------------------------------CTGA------------------------------GGTATAT-----------------------------------------ATT--------------------------------------------------------------CTCTG---------------------------------------------------------------ATTTGAATTCTGTTAAAC--GTTGCA-CAAATT---TAACATGACTAGGC--------TTTCCACC--AACTCTTTACTCAAATGGAAT-GGCACTTACAGCACGATGGGAACTGCGGTAAGGAACTTGCGGGTTGTGGTCATCTGCACAC
droKik1 scf7180000302808:108106-108181 - ATATGAAGTTGGCTATAAAGTGTTCTGTGTTGTTCCGAGTGTACAAGCACGTGAGTAGAAAACTGAAAAAAAT-CAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:17007778-17007864 + ATACAAAGTTGGCTATGAAGTGTTCCGTGCTATTCCTGGTGTACAAGCAGGTGAGGAGGAAACTGCCAAAAAA-ATG-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATA-----AATGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396641:496382-496452 + ATACAAAGTTGGCTATAAAGTGTTCCGTGCTATTCCTGGTGTACAAACAAGTGAGGAGGAACCTGCGAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:4588838-4588909 + ACACAAAGTTGGCTATAAAGTGCTCGGTACTATTGCGGGTGTACAGACAGGTGAGCAGGAAACTGGAAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_9:2884817-2884888 + ACACAAAGTTGGCTATAAAGTGCTCGGTACTATTGCGGGTGTACAGACAGGTGAGCAGGAAACTGGAAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004511:1144952-1145020 + AAATAAAATTGGCTATAAAATGTTCCGTATTATTGCGTGTATAGAGACAGGTGAGCAGAAACCTAGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:24306014-24306126 + ATATAAAATTTGCAATGAAATGTTCCGTGCTGTTGCGCGTATACAAACAAGTTAACAGAAAGCTGCAAGTAAC-A---ATA--------------------------TTCT--------A-TGAG-------------------------------------------------AAATTC-----------------------------------------------------------------------------------------------------------------TCAATAAATAGTATA-----TA-----------------------------------------------------------------------CAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:18935518-18935590 + ATATGAAATTTGCAATGAAATGCTCAGTGCTATTACGGGTGTACAGACAAGTCAAAAGGAATCTACAATAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:9447870-9447945 - ATATAAAATTGGCAATGAAATGTTCCGTGCTATTGCGTGTGTATAGACAAGTTAAGAGGAAGCTGTAAGAAAC-AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATATAAAGTTTGCGATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGACAGGTAAGTAGAAAACTATAAAAAGT-CAA-GTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATGTGAATATCTATGTTAGGCAA-----TA-------------------------------AATTCATTATATATAAAGTAATTTAATTA-ACTGCAGTACATAACAAGTATTTACCG--------------ACATTAAAATAAGTT-----CAGAATTTAAATCTTC----ATTAAGT------------------GTTTAATTATTT-----------------------------------T-------TTT---TTAATATATTTCCCT-----CT-------AAATTTGC--------------------------CGGATGACATACTTAGTGACTTTATCTTTTCG--CTG-------ACTTACAGAACGTATTCACTTACAGAACAATGGGAACAGCGGTGAGGAATTTGCGGGTTGTGGTCATCTGTACACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTGAGGAATTTGCGGGTTT...............2212.00200000000000002000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCT-----CT-------AAATTTGC--------------------------CGGA...................................................................................................................2112.00220000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAATTTGCGGGTTGTG.............2011.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAACAATGGGAACAGCG..................................2111.00100001000000000000
...........................TGTTGTTTCGGGTGTACAGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC--------------------------CGGATGACATACTTAGTG.....................................................................................................2111.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACATACTTAGTGACTT.................................................................................................1811.00100001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------CGGATGACATACTTAGTGAC...................................................................................................2111.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGTGAGGAATTTGCGGGT.................2111.00100000000000001000
droSec2
ATATAAAGTTTGCGATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGGCAGGTAAGTAGGAAACTATAAAAAAGTCAA-GTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCATGTGAATATCTATGTTGAGCAA-----TAT-------------------------------ATTCATTATATATAAAGTAATTCAATTA-ACTGCAGTACATAAGAAGTATTTACCG--------------ACATTAAAATAAGTT-----CAGAATTTAAATCTTC----ATTAAGT------------------GTTTAATTAT-T-----------------------------------T-------TTT---TTAATATATTTCCCT-----CT-------AAATTTGC--------------------------CGGATGACATACTTAGTGACTTTATCTTTTCG--CTG-------ACTTACAGAACGTATTCACTTACAGAACAATGGGAACAGCGGTGAGGAATTTGCGGGTTGTGGTCATCTGTACACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.TATAAAGTTTGCGATAAAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..........................................ACAGGCAGGTAAGTAGGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC--------------------------CGGATGACATACTTAGTG.....................................................................................................2111.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGGGAACAGCGGTGAG.............................1911.0010100
............CGATAAAGTGTTCCGTGTTGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
dm3
ATATAAAGTTTGGGATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGACAGGTAAGTAGGAAACTATAAAAAAATCAA-TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCA--TGAGTTTCTATGTTAGGCAT-----TAT----------ATGGTAGCAATTACATTACTAGTTC-------------------AATTAAACTGCAGTACATAAAAAGTATTTATTGAAATACTTTGATCAACATTAAAACAAGTT-----TAGAATTTAAGTCTTC----ATTTAGT-----------------------TTTAATT-----------------------------------T-------TTT---TAAATAAAAACCCAC-----CT-------ATATT-----------------------------------------------------------GG--CCG-------ACTTTCAGTACGTATTCACTTACAGAACAATGGGAACAGCTGTGAGGAACTTGCGCGTTGTGGTCATCTGTACCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...TAAAGTTTGGGATAAAGTGTTCCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTACAGAACAATGGGAACAGCTGT................................2613.0030000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TCA--TGAGTTTCTATGTTAGGCAT-----T...........................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TATAAAGTTTGGGATAAAGTGTTCCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TAAAGTGTTCCGTGTTGTTTCGGGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACTTACAGAACAATGGGAACAGC...................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAGGAACTTGCGCGTTGTGGTC..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTCCGTGTTGTTTCGGGTGTACAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCTGTGAGGAACTTGCG....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................TCGGGTGTACAGACAGGTAAGTAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGAGGAACTTGCGCGTTGTGGTC..........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................ATTAAACTGCAGTACATAAAAAGTATT.......................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCGCGTTGTGGTCATCTGT....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTACAGAACAATGGGAACAGCT..................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TACAGACAGGTAAGTAGGAAACTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAACTTGCGCGTTGTGGTCATC.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TATAAAGTTTGGGATAAAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................CGTGTTGTTTCGGGTGTACAGACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TACAGACAGGTAAGTAGGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CGTGTTGTTTCGGGTGTACAGACAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TTGTTTCGGGTGTACAGACAGGTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGGGAACAGCTGTGAGT............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TGAGTTTCTATGTTAGGCAT-----TAT----------ATGG...........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CCGTGTTGTTTCGGGTGTACAGACAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAACTTGCGCGTTGTGG............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TAAACTGCAGTACATAAAA.............................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTTGGGATAAAGTGTTCCGTGTTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TGTTTCGGGTGTACAGACAGGTAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTACAGAACAATGGGAACAGCTGT................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCCGTGTTGTTTCGGGTGTACAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TCTATGTTAGGCAT-----TAT----------ATGGTAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATAAAGTGTTCCGTGTTGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAACTTGCGCGTTGTGGTC..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAGGAACTTGCGCGTTGTGGT...........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGGGAACAGCTGTGAGGAACTTG......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
droEre2
ATATAAAGTTTGCAATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGGCAGGTAAGTAGGAAACTATAAAAGAG-ACG-G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATGTTATGTGATTTTTTATATCAGACCA-----TATAATGTCTGGTAAGGTAGAACTTACATTGCTAATTCATTAAAT-------------------------------------------------------------------------------------TTAAGTATGC----ATATCA-----------------------AATTAATT-----------------------------------T-------ATT---TTAATAAATTTCCCA-----C---------------------------------------------------------------------------CACT-------ACATTCAATAAGTATTCACTTACAGAACAATGGGAACAGCGGTGAGGAACTTGCGGGTCGTAGTCATCTGCACCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
ATATAAAGTTAGCAATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGGCAGGTAAGTAGGAAACTAAAAAAGAG-CGA-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATTTGTATATTATGCATTTGATTAT----------ACGGTAG---TTAGATTATTAATTCATTATTCAT--------------------------ATAGAAAATATTTACCG--------------AAATTAAAGTGAGTGATGATGAAAATTTA--------------------AAATTAAAATACAATTTTT----TAATAAA-----------------------------------T----TTGT---TTAATACATTTTTTA-----CT-------ATATTTGAATCCCAATTAACTTGTTACTTCAAATTGAATTCCATAACTAGGAACTTAATCTGTTCC--CTG-------ACTTCCAAGGCGTATTAACTTACAGAACAATGGGAACAGCCGTGAGGAACTTGCGGGTTGTGGTCATCTGCACCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
ATATAAAGTTCGCTATAAAGTGTTCCGTATTGTTCCTGGTATACAAGCAAGTAAGCAAGAATCTATAAATGAT-AAAACGATAATAAAA---------------------------------------------------------------------------------------------------------------------------------TGATTACATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATA--------------------AGTACTGAAAATTCATTATAT----GATTTAGAATTAATACTCCTTT-----A------------------------------T---ATGGC-AAATCTTTTAAAATTTTATATAATTTATAAT-----------TATAAACTT-TTTTCATAACTCAAAGTTTTTTTCCTCCT--TTA-------ACTAAAAAATAGCGTGCACTTACAGCACAATAGGGACGGCGGTGAGAAACCGGCGGGTTGTGGTCATTTGCACGCSizeHit CountTotal NormTotal
No Reads
droBia1
ATACAAAATTTGCTATAAAGTGTTCCGTGTTGTTCCGTGTGTACAGGCAGGTAAGTAGGAATCTATAAAAACA-ATA-GTATTACACAAATGTA---------------TTTAGATTCAGTAGAGGTTTTTGGTTTGGTACTTTCATG-GCTCTCTATAATTACT-----------------------------------------------------------------------TAAACAACAAGATATGGTAAAA---------------------------------------------A----------------------------------------------------------------------------------------------------C----AAACATAAATAGTATTTAATTAATG----------ATATTCAAATCTACT-----TCAATTTAAAATGTTGCAGAATCAAGTGTGAACTTAAATTCATTTTGA----TTTCGAA--CCTAGGTTC----GCTTTACAAATATTATGTATTTTCGGATGATTTTAGCGCGGTGTCGGAACCTATTGGAATTTAATGTAAATTGGCACT---T-GACTC--------------TACTTCTAGGCACTTC-------CACC--ATCGTTTGCCCTA-ACACGGAAGGCACTTACAGCACAATAGGAACGGCGGTGAGAAACTTGCGGGTTGTGGTCATTTGCACTCSizeHit CountTotal NormTotal
No Reads
droTak1
ATATAAAGTTTGCTATAAAGTGTTCCGTATTGTTCCGGGTGTACAGGCAAGTAAGTAGGAATCTATGAAAGGA-AAA-GAATCGTACAGATGTA---------------TTTATAAACAGTAAAGAGATTAGTTTTTATACTTTTGTGTGGGCTCTATAAATAAATTTACAGCAACATTCTTATGGAGTACTATGTTAAAACAATTCTAATGCCCGATTGATCACATCATGACCTAAGGCCAAAAAA------GACCCATCTTAC----------------------------------------------------------------------------------------------------------------CATTGATTATGGAGTT--------------------------------------------------------------------GTTTATTATG--------------------GGGAATTAAAATTCATTTTAT----TATTTAG-----------------------------------C----TGGGACATTCATACAGTTTCTAAACTGAT-------AAATGTAAATCAAAACTAAAT-GACTCTTCAGAC-----------TCTAGAGGTTTA-------AACG--GGCCTTTAACTTA-------GATGCACTTACAGCACAATGGGAACGGCGGTGAGAAACTTGCGTGTTGTGGTCATCTGCACTCSizeHit CountTotal NormTotal
No Reads
droEle1
ATATAAAGTTCGCAATGAAGTGTTCTGTGTTGTTCCGGGTATACAAGCAAGTAAGTAGGAATCTGTAAAAACA-AAT-TCGTTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAATTCAGTT------------------------------------------------------------------------------------TCAACGATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT-------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATATAAAGTTCGCTATGAAGTGTTCTGTGTTGTTTCGGGTGTACAAGCAAGTAAGTAGGAAACTGTAAAAACA-AAA-TCGTTATAAAATTATG---------------ATCA-----------------------------------------TTAT-ATTTTA-----------------------------------------------------------------------TGAATAAAAAGAGATGGAAATAATCTTATTGTTTGCCAGCACTTTCTCAAAGACCGTTTACTGGGTAA----------------------------------------------------------------------------------------------------T----GAATTTAATGAGTAATTA-----------------------------------------ATTTAATT---------------------------------A----ATTATTTAA-----------------------------------------TTT---TTAATACTTTTCTTT-----GT-------A--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATATGAAGTTCGCTATAAAGTGTTCCGTGTTGTTCCGTGTGTACAAGCAAGTAAGTAAAAATCTAAAGAAGAA-A-T-TCGTTGTATTTAAATGAAATGTTAAAATGTATT--------G-GAAG-------------------------------------------------AAAT---------------------------------------------------------------------------------TCGTTCTGTTT-----------------------TCACTATGTGTTGTA-----TA-----------------------------------------------------------------------CTGA------------------------------GGTATAT-----------------------------------------ATT--------------------------------------------------------------CTCTG---------------------------------------------------------------ATTTGAATTCTGTTAAAC--GTTGCA-CAAATT---TAACATGACTAGGC--------TTTCCACC--AACTCTTTACTCAAATGGAAT-GGCACTTACAGCACGATGGGAACTGCGGTAAGGAACTTGCGGGTTGTGGTCATCTGCACACSizeHit CountTotal NormTotal
No Reads
droKik1
ATATGAAGTTGGCTATAAAGTGTTCTGTGTTGTTCCGAGTGTACAAGCACGTGAGTAGAAAACTGAAAAAAAT-CAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
ATACAAAGTTGGCTATGAAGTGTTCCGTGCTATTCCTGGTGTACAAGCAGGTGAGGAGGAAACTGCCAAAAAA-ATG-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATA-----AATGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATACAAAGTTGGCTATAAAGTGTTCCGTGCTATTCCTGGTGTACAAACAAGTGAGGAGGAACCTGCGAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ACACAAAGTTGGCTATAAAGTGCTCGGTACTATTGCGGGTGTACAGACAGGTGAGCAGGAAACTGGAAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................CTATTGCGGGTGTACAGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
droPer2
ACACAAAGTTGGCTATAAAGTGCTCGGTACTATTGCGGGTGTACAGACAGGTGAGCAGGAAACTGGAAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................GGTGTACAGACAGGTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.............................CTATTGCGGGTGTACAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
droWil2
AAATAAAATTGGCTATAAAATGTTCCGTATTATTGCGTGTATAGAGACAGGTGAGCAGAAACCTAGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ATATAAAATTTGCAATGAAATGTTCCGTGCTGTTGCGCGTATACAAACAAGTTAACAGAAAGCTGCAAGTAAC-A---ATA--------------------------TTCT--------A-TGAG-------------------------------------------------AAATTC-----------------------------------------------------------------------------------------------------------------TCAATAAATAGTATA-----TA-----------------------------------------------------------------------CAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............AATGAAATGTTCCGTGCTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000100000000000000000010000000000000000000000000000000000
.......................................................................................................................A-TGAG-------------------------------------------------AAATTC-----------------------------------------------------------------------------------------------------------------TCAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1612.002000000000000000000000000000000000000000000000000000000000000002
....................TGTTCCGTGCTGTTGCGCGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000001000000000000100000000000000000000000000000
.................................TGCGCGTATACAAACAAGTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
............CAATGAAATGTTCCGTGCTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...............TGAAATGTTCCGTGCTGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
..........TGCAATGAAATGTTCCGTGCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
.........TTGCAATGAAATGTTCCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.................AAATGTTCCGTGCTGTTGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000100000000000000000000000000000000
droMoj3
ATATGAAATTTGCAATGAAATGCTCAGTGCTATTACGGGTGTACAGACAAGTCAAAAGGAATCTACAATAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATATAAAATTGGCAATGAAATGTTCCGTGCTATTGCGTGTGTATAGACAAGTTAAGAGGAAGCTGTAAGAAAC-AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:05 PM