ID:

dsi_17768

 Coordinate:

3r:24294923-24295072 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTCAATATAAATCTCACTGAAACGCAACAAACAACCGAAAACCCAACTGAAAACGAAAACTAAATAAAAGGAAATGCAATTAAAGTTCATGCATTTGCGTTTGTACTGGGTGAAATGTTCTTAGGAAAATAAAGAAAATTCCATACAATTTTAAAAACACTTGCATTTTATTATTGGCTCCGTTTTACATACATTCACAGGTTGCCGTGGGATCGAAAATGTTCTGATCATTTTCATTGAGATTCGTTTA
************************************************************...................((.(((..(((.((((((.((....))))))))..)))..)))...))*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body
...........................................................................................................................................................................................................GCCGTGGGATCGAAAATG............................. 18 0 1 1.00 1 1 0 0 0 0 0 0
............................................................TAAATAAAAGGAAATGCAATT......................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................TGGGTGAAATGTTCTTAGGAA........................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
........................................................................................................ACTGGGTGAAATGTTCTTAGGAAAA......................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................AAATAAAAGGAAATGCAATT......................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................CATTTGCGTTTGTACTGGGTGA......................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................TGTACTGGGAGAAATGTTCTTAGGAAAA......................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 1 0
............CTCACTGAAACGCAACAAACAACCGAA................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................AAAGTTCATGCATTTGCGTTT.................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................CAACCGAAAACCCAACTGAAAACGAA................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0
...............................................................................................TGCGTTTGTACTGGGTGAAATGTTC.................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
................................................................TAAAAGGAAATGCAATTAAAGTA................................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
...............................................................................TTAAAGTTCATGCATTTGCGTTTGTA................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................AGGAATATAAAGAAATTTCGAT.......................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 1
......ATAAATATCACTGAAGAGCAA............................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0 0
..........................................................................................................................AGGAAAAGAAAGAAAACTCGAT.......................................................................................................... 22 3 6 0.17 1 0 0 0 0 1 0 0
...........................................................................................................................................................................TATATGCTCCGTTTTACATA........................................................... 20 2 7 0.14 1 0 0 0 1 0 0 0
...............................................................................TTAGAGTTCTTGCATTTACG....................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0
..........................................................................................................................AGGAAGAGAAAGAAAATTC............................................................................................................. 19 2 11 0.09 1 0 0 0 0 0 0 1
.................................................................................................................................................................................................TTCACAGGTTGCAATGG........................................ 17 2 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

AAGTTATATTTAGAGTGACTTTGCGTTGTTTGTTGGCTTTTGGGTTGACTTTTGCTTTTGATTTATTTTCCTTTACGTTAATTTCAAGTACGTAAACGCAAACATGACCCACTTTACAAGAATCCTTTTATTTCTTTTAAGGTATGTTAAAATTTTTGTGAACGTAAAATAATAACCGAGGCAAAATGTATGTAAGTGTCCAACGGCACCCTAGCTTTTACAAGACTAGTAAAAGTAACTCTAAGCAAAT
***************************************************************************************************************************...................((.(((..(((.((((((.((....))))))))..)))..)))...))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
...............................................................................................................................................................................................GTAAGTGTCCAACGGCACCCTAGCTT................................. 26 0 1 2.00 2 0 0 0 0 0 2 0 0
....................TTGCGTTGTTTGTTGGCTTTCGGGT............................................................................................................................................................................................................. 25 1 1 2.00 2 1 0 0 1 0 0 0 0
.............................................................................................................................................AAATGTTAAAATTTTTGTGAACGTAAAAT................................................................................ 29 2 1 1.00 1 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................CGGCACCCTAGCTTTTACAAGACT....................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................AAGTGTCCAACGGCACCCTAGCTTTT............................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGTCCAACGGCACCCTA..................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................AAGTGTCCAACGGCACCCT...................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................AACGGCACCCTAGCTTTTACAAGACT....................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................................................................................TTTTAAGGTATGTTAAAAT................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0
................................ATGGCTTTCGGGTTGACTTTTGCTT................................................................................................................................................................................................. 25 2 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................GAACGTAAAATAATAACCGAGGCAAAAT............................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................CACAATGTATTTAAGTGTCCAACGG............................................ 25 2 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................GTAAGCGTCCAACGGCACCCTAGCTT................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................CCAACGGCACCCTAGCTTTTACAAGACT....................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTTTAAAAGACTAGTAA.................. 17 1 2 1.00 2 0 0 2 0 0 0 0 0
.................................TGGCTTTCGGGTTGACTTTTGCTT................................................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................AAGTGTCCAACGGCACCCTAGCTT................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................TTAAGTGTCCAACGGCACCCTAGCTTTT............................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................TTTGCTTTTGATTTATTTTCC................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
..................................................TTTGCATTTGATTTATTTTCC................................................................................................................................................................................... 21 1 2 0.50 1 0 0 0 0 1 0 0 0
..............................TGTTGGCTTTCGGGTTGACTT....................................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAATGTATCTAAGTGT................................................... 16 1 13 0.08 1 0 0 0 0 0 1 0 0
.....................TGCGTTGTTTGGTGGAT.................................................................................................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:24294873-24295122 + dsi_17768 TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAACAAC------CGAA-A---------------------------------ACCCAACTGA----------AAACGAAAACTAAA------TAAAA-----G--GAAATGCAATTAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAAC-ACTTGCATTTTAT---------------TA--TTGGCTCCGTTTTA--------------------CATACATTCACAGGTT--------GCC-G----------------------T-GGGATCGAAAATGTTC---T--G---ATCATTTTCA--------TTGAGATTCG----------------------TTTA
droSec2 scaffold_4:3799307-3799556 + TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAACAAC------CGAA-A---------------------------------ACCCAACTGA----------AAACGAAAACTAAA------TAAAA-----T--GAAATGCAATTAAAGTT---CATG----CATT---TGCGT--TTATACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAAC-ACTTGCATTTTAT---------------TA--TTGGCTCCGTTTTA--------------------CATACATTCACAGGTT--------GCC-G----------------------T-GGGATCGAAAATGTTC---T--G---ATCATTTTCA--------TTGAGATTCG----------------------TTTA
dm3 chr3R:24934623-24934872 + TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAACAAC------CGAA-A---------------------------------ACCCAACTGA----------AAACGAAAACTAAA------TAAAA-----G--GAAATGCAATTAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAAC-ACTTGCATTTTAT---------------TA--TTGGCTCCGTTTTA--------------------CATACATTCACAGGTT--------GCC-G----------------------T-GGGATCGAAAATGTTC---T--G---CTCATTTTCA--------TTGAGATTCA----------------------TTTA
droEre2 scaffold_4820:3096797-3097041 - TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAA---C------CGAA-A---------------------------------ACCCAACTGA----------AAACGAAAACTTAA------TAAAA-----G--AAAATGCAATTAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAAC-ACTTGCATTTTAT---------------TA--TTGGCTCCGCTTTA--------------------AATTC----ACAGGTT-------TGCCTG----------------------T-GGGATCGAAAATGTTC---T--G---GTCATTTTCA--------TTGAGATTCG----------------------TATA
droYak3 3R:21563368-21563615 - TTC------------------------------AACATA--AATCTCACTGAA-ACGCAACAAA---C------CGAA-A---------------------------------ACCCAACTGA----------AAATGAAAACTGAA------TAAAA-----G--GAAATGCAATTAAAGTT---CATGCATGCATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAAC-ACTTGTATTTTAT---------------TA--TTGGCTCCGTTTTT--------------------AATTC----ACAGGCT--------GCCTG----------------------T-GGGATCGAAAATGTTC---T--G---GTCATTTCCA--------TTGAGATTCG----------------------TTTA
droEug1 scf7180000409787:641463-641716 - TTC------------------------------AATATAAAAATCTCACTGAA-ACGCAACAAA--AC------CGAA-A---------------------------------ACCCAACTGA----------AAACTGAAACTAAA------TAAAA----AG--GAAATGCAATCAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACACTTTTAA--AAACT-ATCGCATTTTAT---------------TA--TCGGCTTTGTTTTC--------------------AATAC---CACAGGTT--------GACAA----------------------T-GGGATCGAAAACGTTC---TTGGCATCGCATTTTC-T-------TTGAGATTCG----------------------TTTA
droBia1 scf7180000302136:3216558-3216804 - TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAA---C------CGAA-A---------------------------------GCCCAACTGA----------GAACGAAAACTAAA------TAAAA----AG--AAAATGCAATCAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAATT-ATCGCTTTTTAT---------------TA--TCGGCTCTTTTTCA--------------------AATAC----GCTGGTT--------GCCTA----------------------T-GGGATCGAAAATGCTC---TTGT---GGCATTCTC-T-------ATGAGATTCG----------------------TTTT
droTak1 scf7180000415310:175230-175476 + TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAA---C------CGAA-A---------------------------------ACCCAACTGA----------GAACGAAAACTAAA------TAAAA-----G--GAAATGCAATCAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGAGA-AATTCCATACAATTTTAA--AAATT-ATCGCATTTTAT---------------TA--TCGGCTCTTTTTCG--------------------AATAT----GCAGGTT--------GCCTA----------------------T-GGGATCGAAAATGCTT---TTGG---TGCATTTTC-T-------GTGAGATTCG----------------------TTTA
droEle1 scf7180000491261:1518937-1519184 + TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAA--AC------CGAA-A---------------------------------ACCCAACTGA----------AAACGGAAACTAAA------TAAAA-----G--GAAATGCAATCAAAGTT---CGTG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAACT-ATCGCATTTTAT---------------TA--TCGACTCTGTTTTC--------------------AACAC----GCAGGTT--------GCCTA----------------------T-GGGATCGAGAATGCTC---TTGG---CGCATTCTCAT-------GTGAGATTCG----------------------TTTA
droRho1 scf7180000780007:103708-103947 - TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAA---C------CGAA-A---------------------------------ACCCAACTGA----------AAACGGAAACTAAA------TAAAA-----G--GAAATGCAATCAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAACT-ATTGCATTTTAT---------------TA--TCGGCTCTGTTTTC--------------------AATAC----G---------------CTTA----------------------T-GGGATCAGAAATGCTC---TTAG---CACATTTTCAT-------GTGAGATTCG----------------------TTTA
droFic1 scf7180000453826:666013-666258 - TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAA---C------CGAA-A---------------------------------ACCCAACTGA----------AAACGGAAACTAAA------TAAAA-----G--GAAATGCAATCAAATTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAAT-GTTTGCATTTTAT---------------TA--TCGATTCGGTTCTT--------------------AATAC----GCAGGTT--------GCCTA----------------------T-GGGATTAAAAATGCGA---TTGG---CGCATTTCC-T-------GTGAGATTCG----------------------TTTA
droKik1 scf7180000302705:103633-103902 + TTC------------------------------AATATGAAAATCTCACTGAA-ACGCAACAAA---A------CGAA-A------ACGAAACCGA-----------AAGAAAGCCCAACTAA----------AACCGGAAACTAAA------TAAAA-----TGAGAAATGCAATAAAAGATTATTATG----CATT---CGCGTTTTTGTACTGGGTAAAGAGA-AA----------------------------TGTTCTTAGGCAAATAAAGAGATAATTCCATCAAATTTTAAGAAAACT-CTCGCATTTTAT---------------TATATCGGCTG--TTTTTCCTAATGTTTTTTTTTCT--G------------------GGTTTGAATG-------------------------------AA---GCCTTTGTT-------------GG--------CTGAGATTCG--------------------------
droAna3 scaffold_13340:19640993-19641290 - TTC------------------------------AAAATA--AATCTCACTGAA-ACGCAACAAA---C------CGAAAA---------------------------------GCCCAACTGA-------AAAAAACGGAAACTAAA------TAAAT-----G--GAAATGCAATCAAAGTT---CATG----CATT---GGCGT--TTGTACTGGGA-GAGAGA-GA----------------------------TGTTCTTAGGCAAATAAAGAAA-AATTCCATACAATTTTAA--AAACTATTTGAATTTTAT---------------TA--TCGGCTCTTCTTTT------GT-------TCTTCACTAT----GCAGGTTGTAGGTTTGCATACACCGGTTTTTTATTTTTAAATT-GGTATTGAAAATGCAA---GAAA---TGCATTTCC-TACCAAT-TTGAGATTCA----------------------TTT-
droBip1 scf7180000396413:2745949-2746197 + TTC------------------------------AAAATA--AATCTCACTGAA-ACGCAACAAA-AAC------CGAA-A-------------------------------AAGCCCAACTGA---------AAAACGGAAACTAAA------TAAAT-----G--GAAATGCAATCAAAGTT---CATG----CATT---CGCGT--TTGTACTGGGA-AAGAGAAAA----------------------------TGTTCTTAGGCAAATAAAGAAA-AATTCCATACAATTTTAA--AAACT-ATTGAATTTTAT---------------TA--TCGGTTCTCCTCTT----------------CT--G--AT----GCAGGTA---GGTTTGCATA-------------------------------------CAC---A--C---AGCATTTGCA-----ATTGTGAGATTCC----------------------TTCG
dp5 2:9749568-9749885 - TCCCTATGCTCTTTGAGTAACGGGGAGATAACAAACATA-AAATCTCACTGAAAACGAAACGAA---ACGAAACGCAAC-----------AAGTAACAGAGAAATCAGAGAAAACCCAGCTAA----------AAG-----------------TGAAA-----G-GAAAATGCAATCAAAGTT---CATG----CATTTCATGCGT--TTGTACTGGGT-----GACAA----------------------------CGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAACTATTTGCATTTTATTCAACACGTATGTATTG--TTGGCTCTGCTTAT--------------------AACT-----------------------------------------------TGGGGA-----------C---TTGGATTCG-AGTTCC-T-------GTGAGATTCAATCCTTGCATTACACACATGCCTCCT
droPer2 scaffold_0:10729298-10729615 + TCCCTATGCTCTTTGAGTAACGGGGAGATAACAAACATA-AAATCTCACTGAAAACGAAACGAA---ACGAAACGCAAC-----------AAGTAACAGAGAAATCAGAGAAAACCCAGCTAA----------AAG-----------------TGAAA-----G-GAAAATGCAATCAAAGCT---CATG----CATTTCATGCGT--TTGTACTGGGT-----GACAA----------------------------CGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAACTATTTGCATTTTATTCAACACGTATGTATTG--TTGGCTCTGCTTAT--------------------AACT-----------------------------------------------TGGGGA-----------C---TTGGATTCG-AGTTCC-T-------GTGAGATTCAATCCTTGCATTACACACATGCCTCCT
droWil2 scf2_1100000004921:388418-388511 - TAA------------------------------AACATA--AATCTCACTGAAAAGGCAACAAA---C-AATACCCAAAA-----------ATTA--------------------AAAACAAA---------AAAAAAAAAAGTGAA------TAAAA----ACAAAAAATGCAATCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12855:882580-882780 - T--------------------------------------------------AA-ACGCAACAAATAAC------GAGA-AACCGAATTGAAACTGA-----------AA----A-----C--AAAACTTTA--A-----CAAACAAAC-----CAAAACCCATT--AAAATGCAATCAAATCT---AATG----CATG---TTGTT--GGGTGCATGTG-----CA-AATCGAAGGCATAAAAAAAATTGAAAAATACGTATTCATAAGAATAAACA-A-AATT-CAGACAATTTTAA--ATAC---GCGTCTTTTAT---------------TA--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:7643956-7644084 + T--------------------------------AACATC--AATCCGAATT-------------------------------------GAAACAGG-----------AA----ACAAACTTTA----------CAAAATAAACCAAA----ACCCACA----CA--GAAATGCAATCAAATTT---AGTG----CATG---TTGTT--GGGTGCAAGTG-----CA-AAT---------------------------CGTACGCAAAAAAAAAAAAA-A-AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:1973594-1973827 - A---------------------------------ACTTA--TATCGTATTAAAAACGCAACAGATAAC----AACAAGAACCCGAATTGAAACATA-----------AA----------C--GAAACTTAAAAAGAAAAAAATCAAACAAAAAACCAA----CA--AAGATGCAATTAAATTA---AATG----CATG---TCGTT--GGGTGCAAGTG-----CA-AATAGTA--CACA-AAAAAATTGAAAAATACGTATTCATAAGAATAAACA-A-GATT-CAGACAATTTTAA--A-TT-ACGAGTCTTTTAT---------------TA--TCCGCCATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAACAAC------CGAA-A---------------------------------ACCCAACTGA----------AAACGAAAACTAAA------TAAAA-----G--GAAATGCAATTAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAAC-ACTTGCATTTTAT---------------TA--TTGGCTCCGTTTTA--------------------CATACATTCACAGGTT--------GCC-G----------------------T-GGGATCGAAAATGTTC---T--G---ATCATTTTCA--------TTGAGATTCG----------------------TTTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................GCC-G----------------------T-GGGATCGAAAATG...................................................................1811.00100000000001000000
...............................................................................................................................................TAAA------TAAAA-----G--GAAATGCAATT.......................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
......................................................................................................................................................................................................................TGGGT-----GA-AA----------------------------TGTTCTTAGGAA...........................................................................................................................................................................................................................................2111.00100000000010000000
....................................................................................................................................................................................................................ACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAA.........................................................................................................................................................................................................................................2511.00100000000001000000
................................................................................................................................................AAA------TAAAA-----G--GAAATGCAATT.......................................................................................................................................................................................................................................................................................................................................2011.00100000001000000000
..................................................................................................................................................................................................CATT---TGCGT--TTGTACTGGGT-----GA-.....................................................................................................................................................................................................................................................................................2211.00100000001000000000
............................................CTCACTGAA-ACGCAACAAACAAC------CGAA-.........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.................................................................................................................................................................................AAAGTT---CATG----CATT---TGCGT--TT......................................................................................................................................................................................................................................................................................................2111.00100000000001000000
................................................................CAAC------CGAA-A---------------------------------ACCCAACTGA----------AAACGAA............................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
.........................................................................................................................................................................................................TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTC..................................................................................................................................................................................................................................................2511.00100000000001000000
.........................................................................................................................................................TAAAA-----G--GAAATGCAATTAAAGTA---..............................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
...............................................................................................................................................................................TTAAAGTT---CATG----CATT---TGCGT--TTGTA...................................................................................................................................................................................................................................................................................................2611.00100000001000000000
droSec2
TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAACAAC------CGAA-A---------------------------------ACCCAACTGA----------AAACGAAAACTAAA------TAAAA-----T--GAAATGCAATTAAAGTT---CATG----CATT---TGCGT--TTATACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAAC-ACTTGCATTTTAT---------------TA--TTGGCTCCGTTTTA--------------------CATACATTCACAGGTT--------GCC-G----------------------T-GGGATCGAAAATGTTC---T--G---ATCATTTTCA--------TTGAGATTCG----------------------TTTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................TT--------GCC-G----------------------T-GGGATCGAAAAT....................................................................1911.0010001
..................................................................................................................................................................................................................................................................................................................................................................................................T--------GCC-G----------------------T-GGGATCGAAAATGTT.................................................................2111.0010001
.................................................................................................................................................................................................................................................................TGTTCTTAGGAAAATAAAGA-A-................................................................................................................................................................................................................................2111.0011000
...................................................................................................................................................................................................................................................................TTCTTAGGAAAATAAAGA-A-AATTCCA.........................................................................................................................................................................................................................2611.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................T--------GCC-G----------------------T-GGGATCGAAAATG...................................................................1911.0010001
dm3
TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAACAAC------CGAA-A---------------------------------ACCCAACTGA----------AAACGAAAACTAAA------TAAAA-----G--GAAATGCAATTAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAAC-ACTTGCATTTTAT---------------TA--TTGGCTCCGTTTTA--------------------CATACATTCACAGGTT--------GCC-G----------------------T-GGGATCGAAAATGTTC---T--G---CTCATTTTCA--------TTGAGATTCA----------------------TTTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................CAACAAACAAC------CGAA-A---------------------------------ACCCA..................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TA--------------------CATACATTCACAGGTT--------GCC-G----------------------T-GGGA............................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
..................................................................................................................................................................................................................................................................................AGA-A-AATTCCATACAATTTTAA--............................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CCCAACTGA----------AAACGAAAACTA.......................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTC..................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
..................................................................................................................................................................................................CATT---TGCGT--TTGTACTGGGT-----G.......................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
..................................................................................................................................................................................................CATT---TGCGT--TTGTACTGGGT-----........................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
...................................................................................................................................................................................................................TACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAA.........................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
............................................CTCACTGAA-ACGCAACAAACAAC------CGAA-.........................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TG----CATT---TGCGT--TTGTACTGGGT-----GA-.....................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.................................................................................................................................................................................................................................................................................................................................................................................................TT--------GCC-G----------------------T-GGGATCGAAAATGT..................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000000000
.....................................................................................................................................................................................TT---CATG----CATT---TGCGT--TTGTACTGGGT-----........................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................TG----CATT---TGCGT--TTGTACTGGG..............................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100
...........................................................................................................................................AAACTAAA------TAAAA-----G--GAAATGCAATTAAAG...................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TAGGAAAATAAAGA-A-AATT............................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................T---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-.....................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.................................................................................................................................................................................................................................................................................AAGA-A-AATTCCATACAATTTTA...............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TAAAGTT---CATG----CATT---TGCGT--TTGT....................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................A---------------------------------ACCCAACTGA----------AAACGAAAACTAAA------TAA............................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TATA--AATCTCACTGAA-ACGCAACAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................A---------------------------------ACCCAACTGA----------AAACGAAAACTAAA------...............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................AAA-----G--GAAATGCAATTAAAGTT---..............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...........................................................................................................................................................AAA-----G--GAAATGCAATTAAAGTT---C.............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTT--------GCC-G----------------------T-GGGATCGAAAATG...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................CCAACTGA----------AAACGAAAACTAAA------TA.............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TA--AATCTCACTGAA-ACGCAACAAACAAC------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TT---CATG----CATT---TGCGT--TTGTACTGGG..............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TACATTCACAGGTT--------GCC-G----------------------T-GGGA............................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................CAAC------CGAA-A---------------------------------ACCCAACTGA----------AAACGAA............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CATG----CATT---TGCGT--TTGTACTGGGT-----........................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................ACAAC------CGAA-A---------------------------------ACCCAACTGA----------AAACGAA............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TAAAGA-A-AATTCCATACAATTTTAA--AA..........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CATTCACAGGTT--------GCC-G----------------------T-GGGA............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................AAAACTAAA------TAAAA-----G--GAAATGCA..........................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................T--------GCC-G----------------------T-GGGATCGAAAATGTT.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................TCTCACTGAA-ACGCAACAAACAAC------CGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CTCACTGAA-ACGCAACAAACAAC------CGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTT--------GCC-G----------------------T-GGGATCGAAAA.....................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAA.........................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................T---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGT....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CTAAA------TAAAA-----G--GAAATGCAATT.......................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TAAA------TAAAA-----G--GAAATGCAATTAAAGTT---C.............................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................AGA-A-AATTCCATACAATTTTA...............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATCTCACTGAA-ACGCAACAAACAAC------CGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTTTAT---------------TA--TTGGCTCCGTTTT..........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................................................................................TT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGT....................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAA...........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................AAAGTT---CATG----CATT---TGCGT--........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CAATTAAAGTT---CATG----CATT---TGCGT--TTG.....................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................CCCAACTGA----------AAACGAAAACTAA......................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGT....................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................G----CATT---TGCGT--TTGTACTGGGT-----........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.....................................TA--AATCTCACTGAA-ACGCAACAAACAAC------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAT---------------TA--TTGGCTCCGTTTTA--------------------CA...................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
............................................................................AA-A---------------------------------ACCCAACTGA----------AAACGAAAACTAAA------T..............................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TATA--AATCTCACTGAA-ACGCAACAAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCTCACTGAA-ACGCAACAAACAAC------CGAA-A---------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................ACCCAACTGA----------AAACGAAAACTAAA------...............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................GT--TTGTACTGGGT-----GA-AA----------------------------T......................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................T--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAA...........................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................AACAAC------CGAA-A---------------------------------ACCCAACTGA----------AAACGAA............................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATATA--AATCTCACTGAA-ACGCAACAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..C------------------------------AATATA--AATCTCACTGAA-ACGCAACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTGTACTGGGT-----GA-AA----------------------------TGTTCTA................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................A-ACGCAACAAACAAC------CGAA-A---------------------------------ACCCAAC................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TT---TGCGT--TTGTACTGGGT-----GA-.....................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................AATGCAATTAAAGTT---CATG----CATT---TGCG...........................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGTACTGGGT-----GA-AA----------------------------TGTTCTT................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................T---CATG----CATT---TGCGT--TTGTACT.................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TATA--AATCTCACTGAA-AC................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..C------------------------------AATATA--AATCTCACTGAA-AC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................T---CATG----CATT---TGCGT--TTGTACTGGGT-----........................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CGAAAACTAAA------TAAAA-----G--T.................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAA---C------CGAA-A---------------------------------ACCCAACTGA----------AAACGAAAACTTAA------TAAAA-----G--AAAATGCAATTAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAAC-ACTTGCATTTTAT---------------TA--TTGGCTCCGCTTTA--------------------AATTC----ACAGGTT-------TGCCTG----------------------T-GGGATCGAAAATGTTC---T--G---GTCATTTTCA--------TTGAGATTCG----------------------TATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................ATATA--AATCTCACTGAA-ACGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.........................................................................................................................................................TAAAA-----G--AAAATGCAATTAAAGTT---CA............................................................................................................................................................................................................................................................................................................................2511.0011000000
................................................................................................................................................TAA------TAAAA-----G--AAAATGCAATTAAAGTT---..............................................................................................................................................................................................................................................................................................................................2611.0011000000
............................................CTCACTGAA-ACGCAACAAA---C------CGAA-A---------------------------------ACC....................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
..........................................................................................................................................................................................CATG----CATT---TGCGT--TTGTACTGGGT-----GA-.....................................................................................................................................................................................................................................................................................2611.0010000010
.........................................................................................................................................................................................................TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCT.................................................................................................................................................................................................................................................2611.0011000000
.....................................TA--AATCTCACTGAA-ACGCAACAAA---C------CGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
droYak3
TTC------------------------------AACATA--AATCTCACTGAA-ACGCAACAAA---C------CGAA-A---------------------------------ACCCAACTGA----------AAATGAAAACTGAA------TAAAA-----G--GAAATGCAATTAAAGTT---CATGCATGCATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAAC-ACTTGTATTTTAT---------------TA--TTGGCTCCGTTTTT--------------------AATTC----ACAGGCT--------GCCTG----------------------T-GGGATCGAAAATGTTC---T--G---GTCATTTCCA--------TTGAGATTCG----------------------TTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................CTG----------------------T-GGGATCGAAAATGTTC---T--G---GTC...................................................2511.00100100000000
..................................................................................................................................................................................................................................................................GTTCTTAGGAAAATAAAG....................................................................................................................................................................................................................................1811.00101000000000
..................................................................................................................................................................................................................................................................GTTCTTAGGAAAATAAAGA-..................................................................................................................................................................................................................................1911.00101000000000
droEug1
TTC------------------------------AATATAAAAATCTCACTGAA-ACGCAACAAA--AC------CGAA-A---------------------------------ACCCAACTGA----------AAACTGAAACTAAA------TAAAA----AG--GAAATGCAATCAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACACTTTTAA--AAACT-ATCGCATTTTAT---------------TA--TCGGCTTTGTTTTC--------------------AATAC---CACAGGTT--------GACAA----------------------T-GGGATCGAAAACGTTC---TTGGCATCGCATTTTC-T-------TTGAGATTCG----------------------TTTASizeHit CountTotal NormTotal
No Reads
droBia1
TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAA---C------CGAA-A---------------------------------GCCCAACTGA----------GAACGAAAACTAAA------TAAAA----AG--AAAATGCAATCAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAATT-ATCGCTTTTTAT---------------TA--TCGGCTCTTTTTCA--------------------AATAC----GCTGGTT--------GCCTA----------------------T-GGGATCGAAAATGCTC---TTGT---GGCATTCTC-T-------ATGAGATTCG----------------------TTTTSizeHit CountTotal NormTotal
No Reads
droTak1
TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAA---C------CGAA-A---------------------------------ACCCAACTGA----------GAACGAAAACTAAA------TAAAA-----G--GAAATGCAATCAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGAGA-AATTCCATACAATTTTAA--AAATT-ATCGCATTTTAT---------------TA--TCGGCTCTTTTTCG--------------------AATAT----GCAGGTT--------GCCTA----------------------T-GGGATCGAAAATGCTT---TTGG---TGCATTTTC-T-------GTGAGATTCG----------------------TTTASizeHit CountTotal NormTotal
No Reads
droEle1
TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAA--AC------CGAA-A---------------------------------ACCCAACTGA----------AAACGGAAACTAAA------TAAAA-----G--GAAATGCAATCAAAGTT---CGTG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAACT-ATCGCATTTTAT---------------TA--TCGACTCTGTTTTC--------------------AACAC----GCAGGTT--------GCCTA----------------------T-GGGATCGAGAATGCTC---TTGG---CGCATTCTCAT-------GTGAGATTCG----------------------TTTASizeHit CountTotal NormTotal
No Reads
droRho1
TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAA---C------CGAA-A---------------------------------ACCCAACTGA----------AAACGGAAACTAAA------TAAAA-----G--GAAATGCAATCAAAGTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAACT-ATTGCATTTTAT---------------TA--TCGGCTCTGTTTTC--------------------AATAC----G---------------CTTA----------------------T-GGGATCAGAAATGCTC---TTAG---CACATTTTCAT-------GTGAGATTCG----------------------TTTASizeHit CountTotal NormTotal
No Reads
droFic1
TTC------------------------------AATATA--AATCTCACTGAA-ACGCAACAAA---C------CGAA-A---------------------------------ACCCAACTGA----------AAACGGAAACTAAA------TAAAA-----G--GAAATGCAATCAAATTT---CATG----CATT---TGCGT--TTGTACTGGGT-----GA-AA----------------------------TGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAAT-GTTTGCATTTTAT---------------TA--TCGATTCGGTTCTT--------------------AATAC----GCAGGTT--------GCCTA----------------------T-GGGATTAAAAATGCGA---TTGG---CGCATTTCC-T-------GTGAGATTCG----------------------TTTASizeHit CountTotal NormTotal
No Reads
droKik1
TTC------------------------------AATATGAAAATCTCACTGAA-ACGCAACAAA---A------CGAA-A------ACGAAACCGA-----------AAGAAAGCCCAACTAA----------AACCGGAAACTAAA------TAAAA-----TGAGAAATGCAATAAAAGATTATTATG----CATT---CGCGTTTTTGTACTGGGTAAAGAGA-AA----------------------------TGTTCTTAGGCAAATAAAGAGATAATTCCATCAAATTTTAAGAAAACT-CTCGCATTTTAT---------------TATATCGGCTG--TTTTTCCTAATGTTTTTTTTTCT--G------------------GGTTTGAATG-------------------------------AA---GCCTTTGTT-------------GG--------CTGAGATTCG--------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTC------------------------------AAAATA--AATCTCACTGAA-ACGCAACAAA---C------CGAAAA---------------------------------GCCCAACTGA-------AAAAAACGGAAACTAAA------TAAAT-----G--GAAATGCAATCAAAGTT---CATG----CATT---GGCGT--TTGTACTGGGA-GAGAGA-GA----------------------------TGTTCTTAGGCAAATAAAGAAA-AATTCCATACAATTTTAA--AAACTATTTGAATTTTAT---------------TA--TCGGCTCTTCTTTT------GT-------TCTTCACTAT----GCAGGTTGTAGGTTTGCATACACCGGTTTTTTATTTTTAAATT-GGTATTGAAAATGCAA---GAAA---TGCATTTCC-TACCAAT-TTGAGATTCA----------------------TTT-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................TGTACTGGGA-GAGAGA-GA----------------------------TGT....................................................................................................................................................................................................................................................2111.001100000
.......................................................CGCAACAAA---C------CGAAAA---------------------------------GCCCA..................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................................................ACGCAACAAA---C------CGAAAA---------------------------------GCCCAAC................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
....................................................................................................................................................................................................TT---GGCGT--TTGTACTGGGA-GAG.........................................................................................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................TT---GGCGT--TTGTACTGGGA-GA..........................................................................................................................................................................................................................................................................................2011.001000010
..........................................................................................................................................GAAACTAAA------TAAAT-----G--GAAATGC...........................................................................................................................................................................................................................................................................................................................................2211.001000001
...................................................................................................................................................................................................................TACTGGGA-GAGAGA-GA----------------------------TGTTC..................................................................................................................................................................................................................................................2111.001010000
...........................................................................................................................................................AAT-----G--GAAATGCAATCAAAGTT---..............................................................................................................................................................................................................................................................................................................................2111.001000010
.............................................................................................................................................ACTAAA------TAAAT-----G--GAAATGC...........................................................................................................................................................................................................................................................................................................................................1911.001010000
...........................................................................................................................................................................................................CGT--TTGTACTGGGA-GAGAG.......................................................................................................................................................................................................................................................................................1911.001000010
...........................................................................................................................................................AAT-----G--GAAATGCAATCAAAA...................................................................................................................................................................................................................................................................................................................................1940.251000001
droBip1
TTC------------------------------AAAATA--AATCTCACTGAA-ACGCAACAAA-AAC------CGAA-A-------------------------------AAGCCCAACTGA---------AAAACGGAAACTAAA------TAAAT-----G--GAAATGCAATCAAAGTT---CATG----CATT---CGCGT--TTGTACTGGGA-AAGAGAAAA----------------------------TGTTCTTAGGCAAATAAAGAAA-AATTCCATACAATTTTAA--AAACT-ATTGAATTTTAT---------------TA--TCGGTTCTCCTCTT----------------CT--G--AT----GCAGGTA---GGTTTGCATA-------------------------------------CAC---A--C---AGCATTTGCA-----ATTGTGAGATTCC----------------------TTCGSizeHit CountTotal NormTotal
No Reads
dp5
TCCCTATGCTCTTTGAGTAACGGGGAGATAACAAACATA-AAATCTCACTGAAAACGAAACGAA---ACGAAACGCAAC-----------AAGTAACAGAGAAATCAGAGAAAACCCAGCTAA----------AAG-----------------TGAAA-----G-GAAAATGCAATCAAAGTT---CATG----CATTTCATGCGT--TTGTACTGGGT-----GACAA----------------------------CGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAACTATTTGCATTTTATTCAACACGTATGTATTG--TTGGCTCTGCTTAT--------------------AACT-----------------------------------------------TGGGGA-----------C---TTGGATTCG-AGTTCC-T-------GTGAGATTCAATCCTTGCATTACACACATGCCTCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................TTCATGCGT--TTGTACTGGGT-----GACAA----------------------------.......................................................................................................................................................................................................................................................2513.0030000000300
....TATGCTCTTTGAGTAACGGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................TCAGAGAAAACCCAGCTAA----------AAG-----------------TGAAA-----G-...................................................................................................................................................................................................................................................................................................................................................2811.0010000001000
......................................................................................................................................................................................T---CATG----CATTTCATGCGT--TTGTACTGGG..............................................................................................................................................................................................................................................................................................2711.0010000000100
............................................................................................................................................................................................TG----CATTTCATGCGT--TTGTACTGGG..............................................................................................................................................................................................................................................................................................2411.0010000000010
.................................................................................................AGAGAAATCAGAGAAAACCC...................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................TG----CATTTCATGCGT--TTGTACTGG...............................................................................................................................................................................................................................................................................................2311.0010000000010
.............................................TCACTGAAAACGAAACGAA---ACGAAACGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
...................................................................................................................................................................................................................TACTGGGT-----GACAA----------------------------CGTTCTTAGGAAAA.........................................................................................................................................................................................................................................2711.0010000001000
.............................AACAAACATA-AAATCTCACTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...........................................................................................................................................................................GCAATCAAAGTT---CATG----CATTTCATGCGT--T.......................................................................................................................................................................................................................................................................................................2911.0010010000000
.......................................................................................................................................................................................................CATGCGT--TTGTACTGGGT-----GAC.....................................................................................................................................................................................................................................................................................2111.0010000010000
.........................................................................................................................................................................................................TGCGT--TTGTACTGGGT-----GAC.....................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
TCCCTATGCTCTTTGAGTAACGGGGAGATAACAAACATA-AAATCTCACTGAAAACGAAACGAA---ACGAAACGCAAC-----------AAGTAACAGAGAAATCAGAGAAAACCCAGCTAA----------AAG-----------------TGAAA-----G-GAAAATGCAATCAAAGCT---CATG----CATTTCATGCGT--TTGTACTGGGT-----GACAA----------------------------CGTTCTTAGGAAAATAAAGA-A-AATTCCATACAATTTTAA--AAACTATTTGCATTTTATTCAACACGTATGTATTG--TTGGCTCTGCTTAT--------------------AACT-----------------------------------------------TGGGGA-----------C---TTGGATTCG-AGTTCC-T-------GTGAGATTCAATCCTTGCATTACACACATGCCTCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................AA----------AAG-----------------TGAAA-----G-GAAAATGC...........................................................................................................................................................................................................................................................................................................................................1911.001000001
...................................................AAAACGAAACGAA---ACGAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
droWil2
TAA------------------------------AACATA--AATCTCACTGAAAAGGCAACAAA---C-AATACCCAAAA-----------ATTA--------------------AAAACAAA---------AAAAAAAAAAGTGAA------TAAAA----ACAAAAAATGCAATCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
T--------------------------------------------------AA-ACGCAACAAATAAC------GAGA-AACCGAATTGAAACTGA-----------AA----A-----C--AAAACTTTA--A-----CAAACAAAC-----CAAAACCCATT--AAAATGCAATCAAATCT---AATG----CATG---TTGTT--GGGTGCATGTG-----CA-AATCGAAGGCATAAAAAAAATTGAAAAATACGTATTCATAAGAATAAACA-A-AATT-CAGACAATTTTAA--ATAC---GCGTCTTTTAT---------------TA--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................ATCT---AATG----CATG---TTGTT--GGGT....................................................................................................................................................................................................................................................................................................2112.002000000000000000010000000001000000000000000000000000000000000000
..........................................................................................................................................................................................AATG----CATG---TTGTT--GGGTGCAT................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AATAAACA-A-AATT-CAGACA.....................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................ATACGTATTCATAAGAATAAACA-A-AATT-CAGACAATTTT................................................................................................................................................................................................................3911.001000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................AATCT---AATG----CATG---TTGTT--GGG.....................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................AAAACTTTA--A-----CAAACAAAC-----CAAA...........................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................AAAC-----CAAAACCCATT--AAAATG............................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................GCATGTG-----CA-AATCGAAGGCA..........................................................................................................................................................................................................................................................................2011.001000000001000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TG----CATG---TTGTT--GGGTGCATGT..............................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................................CATG---TTGTT--GGGTGCATGTG-----CA-.....................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................TGCATGTG-----CA-AATCGAAGGC...........................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................ATG---TTGTT--GGGTGCATGTG-----T.......................................................................................................................................................................................................................................................................................2011.001000010000000000000000000000000000000000000000000000000000000000
droMoj3
T--------------------------------AACATC--AATCCGAATT-------------------------------------GAAACAGG-----------AA----ACAAACTTTA----------CAAAATAAACCAAA----ACCCACA----CA--GAAATGCAATCAAATTT---AGTG----CATG---TTGTT--GGGTGCAAGTG-----CA-AAT---------------------------CGTACGCAAAAAAAAAAAAA-A-AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................T--GGGTGCAAGTG-----CA-AAT---------------------------CGT....................................................................................................................................................................................................................................................2011.001000100
droGri2
A---------------------------------ACTTA--TATCGTATTAAAAACGCAACAGATAAC----AACAAGAACCCGAATTGAAACATA-----------AA----------C--GAAACTTAAAAAGAAAAAAATCAAACAAAAAACCAA----CA--AAGATGCAATTAAATTA---AATG----CATG---TCGTT--GGGTGCAAGTG-----CA-AATAGTA--CACA-AAAAAATTGAAAAATACGTATTCATAAGAATAAACA-A-GATT-CAGACAATTTTAA--A-TT-ACGAGTCTTTTAT---------------TA--TCCGCCATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:44 PM