ID:

dsi_17746

 Coordinate:

3r:17445389-17445538 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-25.2 -25.0 -25.0

Flybase annnotation

CDS [3r_17445539_17445779_+]; exon [3r_17445539_17446144_+]; intron [3r_17445047_17445538_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAGACCATTTCTTGTTTTGCCTTGTGCTATTATCAGACTTTTAACGGCCTTTGGTATATTGCACAGTTTTCCTTTGAACCAACTGAGACCCCTTTTTTTTTCGATTACCAACCACCCAATTGGTTGTGGCCAAGGCAACTGAATGACATGTTTCCCGGGAATCGATATCAATCAAGTTTCGGTACTTCAACATTTTACAGTGCCCGCTATGCGTACGAGAACTGCATCTACAACAGTGCCCGCTACAAGT
**************************************************.......................(((((...((((((((...........(((((..(((((....((.((((((((.......)))))))).))....)))....))..)))))..........))))))))..)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
....................................................................TTCCTTTGAACCAACTGAGACCCCTT............................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0
........................................................................TTTGAACCAACTGAGACCCCT............................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................................TGACATGGTTTGCGGGAATCGA..................................................................................... 22 3 1 1.00 1 1 0 0 0 0
......ATCTCCTGTTTTGCCTCGTGC............................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0
.............................................................................................................................GTGGCGAAGGCGACTGACTG......................................................................................................... 20 3 9 0.33 3 0 0 0 0 3
................................................................................................................................................GAAATGTTTCCCGGGAAAC....................................................................................... 19 2 5 0.20 1 0 0 0 1 0
..................................................................................................................................................TATGTTTCCCGGGAA......................................................................................... 15 1 6 0.17 1 0 0 0 1 0
.....................................................................................................................................................GTTTCCCGGGAAGCGTT.................................................................................... 17 2 10 0.10 1 0 0 0 1 0
.............................................................................ATCAACCGAGACCCCGTT........................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

ATCTGGTAAAGAACAAAACGGAACACGATAATAGTCTGAAAATTGCCGGAAACCATATAACGTGTCAAAAGGAAACTTGGTTGACTCTGGGGAAAAAAAAAGCTAATGGTTGGTGGGTTAACCAACACCGGTTCCGTTGACTTACTGTACAAAGGGCCCTTAGCTATAGTTAGTTCAAAGCCATGAAGTTGTAAAATGTCACGGGCGATACGCATGCTCTTGACGTAGATGTTGTCACGGGCGATGTTCA
**************************************************.......................(((((...((((((((...........(((((..(((((....((.((((((((.......)))))))).))....)))....))..)))))..........))))))))..)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 O001
Testis
 M024
male body		 M023
head
.....................................................................................................................................................CAAAGGGCCCTTCGCT..................................................................................... 16 1 3 6.33 19 6 10 3 0 0 0 0 0 0
....................................................................................................................................................CCAAAGGGCCCTTCGCTA.................................................................................... 18 2 5 2.40 12 9 0 0 0 0 1 0 1 1
.....................................................................................................................................................CAAAGGGCCCTTCGC...................................................................................... 15 1 6 2.33 14 6 6 2 0 0 0 0 0 0
.....................................................................................................................................................CAAAGGGCCCTTCGCTA.................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................ACAAAGGGCCCTTCGCT..................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................ACAAAGGGCCCTTCGCTG.................................................................................... 18 2 3 1.00 3 0 0 1 0 0 1 1 0 0
.............................................................................................AAAAAAGAGCTATTGGATGGTG....................................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................AAAGGGCCCTTCGCTA.................................................................................... 16 1 4 1.00 4 4 0 0 0 0 0 0 0 0
............................................................................................AAAAAAAAATGTAATGGTTGGT........................................................................................................................................ 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................TAGTAAGAGGTCACGGGCGAT......................................... 21 3 3 0.67 2 0 0 0 0 2 0 0 0 0
.............................................................................................AAAAAAGAGCTAATGGTT........................................................................................................................................... 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0
...............................................................................................AAAAAAGCTAATGGTTA.......................................................................................................................................... 17 1 3 0.33 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................AACAAAGGGCCCTTCGCT..................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................ACAAAGGGCCCTTCG....................................................................................... 15 1 7 0.29 2 0 1 1 0 0 0 0 0 0
......................................................................................................................................................................TATTTAGTTCAAATCCACGAA............................................................... 21 3 7 0.29 2 0 0 0 0 2 0 0 0 0
.........................................................................................................................................................GGGCCCTTCGCTTTAGATAG............................................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0
..........................................................................................................TGGTGGGTGGGTTAGCCAA............................................................................................................................. 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0
........................................................................AGACTTGGTTGACTC................................................................................................................................................................... 15 1 4 0.25 1 1 0 0 0 0 0 0 0 0
..............................................................................................AAAAAAAGCTAATGGTG........................................................................................................................................... 17 1 6 0.17 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................CCAAAGGGCCCTTCGCTACA.................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0
.....................................................................ACGAGACTTGGTTGACT.................................................................................................................................................................... 17 2 20 0.15 3 0 0 0 0 3 0 0 0 0
.................................................................................................................................................TGTCCAAAGGGCCCT.......................................................................................... 15 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..............................................................................GGTTGACTCTGGTGA............................................................................................................................................................. 15 1 7 0.14 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................CTGTAGAAAGGGCCC........................................................................................... 15 1 7 0.14 1 1 0 0 0 0 0 0 0 0
.............................................................................................AAAAAAAAGCTTATGGTACGT........................................................................................................................................ 21 3 20 0.10 2 0 0 0 0 2 0 0 0 0
........................ACGATAATAGTCTGT................................................................................................................................................................................................................... 15 1 10 0.10 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................GACCAAAGGGCCCTTCGCTA.................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................AAGGGCCCTTCGCTGTCGTT............................................................................... 20 3 10 0.10 1 0 1 0 0 0 0 0 0 0
.............................................................................................AAAAGAAAGCTACTGGTT........................................................................................................................................... 18 2 12 0.08 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................TCCAAAGGGCCCTTCGCTG.................................................................................... 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0
...........................................................................................AAAAAAAAAAGCTAATGGTG........................................................................................................................................... 20 2 14 0.07 1 0 0 1 0 0 0 0 0 0
...............................................................................................AAAAAAGCTAATGGTG........................................................................................................................................... 16 1 14 0.07 1 0 1 0 0 0 0 0 0 0
.........................CGGGAATAGTCTGAAAA................................................................................................................................................................................................................ 17 2 14 0.07 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................GCAAAGGGCCCTTCGCT..................................................................................... 17 2 15 0.07 1 0 1 0 0 0 0 0 0 0
.............................................CCGGGAACTATATAACGTT.......................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 1 0
...........................................................................CTTGGTTGTCTCGGGGG.............................................................................................................................................................. 17 2 18 0.06 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................TTCTGTCGACTTACTGT...................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................CCAAAGGGCCCTTCGCTAC................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................CCAAAGGGCCCTTCGCTAA................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Generated: 04/23/2015 at 09:07 PM