ID:

dsi_17730

 Coordinate:

2r:21116605-21116670 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.7 -7.4 -6.9 -6.8

Flybase annnotation

three_prime_UTR [2r_21116654_21116750_-]; exon [2r_21116654_21117327_-]

No Repeatable elements found

Sense Strand Reads

###################################################################---------------------------------------------------------------------------------------------------
CCACACATTCTATATGCATATCCACTCTTGAATAAACGGATTAGCTCAAAGTAAGATTTCAGCAGTTACAGCGACTTTGATCGATCCTTTATTAAGTGGACTTAACTTACATATAGCAACAATACGCTTAGGCGGTAATGGAAACGGGCATCGACTTGGGGACCGA
**************************************************....................................((....(((((.......))))).....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M053
female body
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 GSM343915
embryo
.................................AAACGGATTAGCTCAAAGT.................................................................................................................. 19 0 1 6.00 6 4 0 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACGGGCATCGACTTGGGGACC.. 21 0 1 6.00 6 3 2 0 1 0 0 0 0 0 0 0 0 0
....................TCCACTCTTGAATAAACGGATTAG.......................................................................................................................... 24 0 1 5.00 5 3 2 0 0 0 0 0 0 0 0 0 0 0
.........................TCTTGAATAAACGGATTAGCTC....................................................................................................................... 22 0 1 5.00 5 1 2 0 0 2 0 0 0 0 0 0 0 0
............................................................AGCAGTTACAGCGACTTTGATT.................................................................................... 22 1 1 4.00 4 0 0 0 0 2 0 0 0 2 0 0 0 0
...........................................................................TTTGATCGATCCTTTATTAAG...................................................................... 21 0 1 4.00 4 0 2 1 0 1 0 0 0 0 0 0 0 0
.....................CCACTCTTGAATAAACGGATTAG.......................................................................................................................... 23 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0 0
............................TGAATAAACGGATTAGCTCA...................................................................................................................... 20 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0
...................ATCCACTCTTGAATAAACGGAT............................................................................................................................. 22 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0
........................CTCTTGAATAAACGGATTAGCT........................................................................................................................ 22 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0
.......................ACTCTTGAATAAACGGATTAGCTC....................................................................................................................... 24 0 1 3.00 3 0 2 0 0 0 0 0 0 0 0 0 1 0
...............................ATAAACGGATTAGCTCAAAGT.................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...............................ATAAACGGATTAGCTCAAA.................................................................................................................... 19 0 1 3.00 3 2 0 0 0 0 1 0 0 0 0 0 0 0
.........................TCTTGAATAAACGGATTAGCTCAAAGTA................................................................................................................. 28 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
.........................TCTTGAATAAACGGATTAGCT........................................................................................................................ 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0
........................CTCTTGAATAAACGGATTAGCTC....................................................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................AACGGATTAGCTCAAAGT.................................................................................................................. 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...........................TTGAATAAACGGATTAGCTCA...................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
......................CACTCTTGAATAAACGGATTAGCTCAAA.................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................AACGGATTAGCTCAAAGTAAGA.............................................................................................................. 22 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................GAATAAACGGATTAGCTCAA..................................................................................................................... 20 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................GAATAAACGGATTAGCTCA...................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................AAACGGATTAGCTCAAAGTAAA............................................................................................................... 22 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0
....................TCCACTCTTGAATAAACGGATTAGCTC....................................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................AATAAACGGATTAGCTCA...................................................................................................................... 18 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
......................CACTCTTGAATAAACGGATTAGCTCAAAG................................................................................................................... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................ATATCCACTCTTGAATAAACGGAT............................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................AAACGGATTAGCTCAAAGTAAGATTTC.......................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................TAAACGGATTAGCTCAAAGTAAGAT............................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................TGAATAAACGGATTAGCT........................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................CAGCAGTTACAGCGACTTTGA...................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................TTTATTAAGTGGACTTAACT........................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................GTTACAGCGACTTTGATCGATCCT.............................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTTGATCTATCCTTTATTAAG...................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................TATCCACTCTTGAATAAAC................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................CCACTCTTGAATAAACGGATTAGCTCAAA.................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................AAACGGATTAGCTCAAAGTAAAA.............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................ACTCTTGAATAAACGGATTAGCT........................................................................................................................ 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................TTGAATAAACGGATTAGCT........................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................AACGGATTAGCTCAAAGTAAGAAA............................................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTTGATCGATCCTTTATTAAAAA.................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................TTAGGCGGTAATGGAAACGGG.................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................TCCACTCTTGAATAAACGGATTAGCTCAA..................................................................................................................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................TTTGATCGATCCTTTATTA........................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGGGCGGTAATGGAAACGGGC................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................TCTTGAATAAACGGATTAGCTCA...................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................TATCCACTCTTGAATAAACGGATTAGC......................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................TCTTGAATAAACGGATTAGC......................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................CAGCAGTTACAGCGACTTTG....................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........TCTATATGCATATCCACTCTTGAATAAA.................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................TATCCACTCTTGAATAAAA................................................................................................................................. 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................TATCCACTCTTGAATAAACGGATT............................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................ACTCTTGAATAAACGGATTAG.......................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTTGATCGATCCTTTATTAAGT..................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................CTTGAATAAACGGATTAGCT........................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................ATAAACGGATTAGCTCAAAGTAAGA.............................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................CTTGAATAAACGGATTAGC......................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................TCTTGAATAAACGGATTAGCTCAAAAAA................................................................................................................. 28 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................AAACGGATTAGCTCAAAAAAAG............................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................AAACGGATTAGCTCAAAA................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................TTGAATAAACGGATTAGCTCAAAGTAAA............................................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................AATAAACGGATTAGCTCAAA.................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................TGAATAAACGGATTAGCTC....................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........ATATGCATATCCACTCTTGAATAAACGG............................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........CTATATGCATATCCACTCTTGAATAAAC................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................AAACGGATTAGCTCAAAGTAAGA.............................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................CTCTTGAATAAACGGATTAGCTCA...................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................GAATAAACGGATTAGCTCAAA.................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............ATGCATATCCACTCTTGAATAAAC................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................TGAATAAACGGATTAGCTCAAAGT.................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................TCTTGAATAAACGGATTAGCTCAAAGT.................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................GAATAAACGGATTAGCTCAAAGTA................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................CTTGAATAAACGGATTAGCTCA...................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................ATCCACTCTTGAATAAACGGATTAGC......................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................ATCCACTCTTGAATAAACGGATT............................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................TGAATAAACGGATTAGCTCAAAGTAA................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................TTGAATAAACGGATTGGCTC....................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AGACGGGCATCGACTTGGG...... 19 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................ACGGGCATCGACTTGGGGAC... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................ATCCACTCTTGAATAAACGGATTAG.......................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................ACTCTTGAATAAACGGATTAGC......................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............TGCATATCCACTCTTGAATAAACGGA.............................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................TTAGCTCAAAGTAAGATTTCAG........................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................AAACGGATTAGCTCAAAG................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................TCCACTCTTGAATAAACG................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............TGCATATCCACTCTTGAATAAACGGAT............................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................TTGATCGATCCTTTATTAAGT..................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TTTGATCGATCCTTTATTAAAA..................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
....................TCCACTCTTGAATAAACGGAT............................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................TAAACGGATTAGCTCAAAGTAAGATT............................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................GATCGATCCTTTATT......................................................................... 15 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................CTATTAAGTGGACTTAACT........................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................AACGGATTAGCGCAA..................................................................................................................... 15 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................AAGGGCATGGACTTGGGGA.... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................CGACTTTGATAGATC................................................................................ 15 1 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...CACATTCTATATGGA.................................................................................................................................................... 15 1 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGTGTGTAAGATATACGTATAGGTGAGAACTTATTTGCCTAATCGAGTTTCATTCTAAAGTCGTCAATGTCGCTGAAACTAGCTAGGAAATAATTCACCTGAATTGAATGTATATCGTTGTTATGCGAATCCGCCATTACCTTTGCCCGTAGCTGAACCCCTGGCT
**************************************************....................................((....(((((.......))))).....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 O002
Head
 M053
female body
.....................................................TCTAAAGTCGTCAATGTCGCT............................................................................................ 21 0 1 5.00 5 3 0 0 0 1 0 1 0
............................................................TCGTCAATGTCGCTGAAACTA..................................................................................... 21 0 1 4.00 4 3 0 0 0 1 0 0 0
..........................................................AGTCGTCAATGTCGCTGAAAC....................................................................................... 21 0 1 3.00 3 0 3 0 0 0 0 0 0
................................................................CAATGTCGCTGAAACTAGCTAGGAAAT........................................................................... 27 0 1 2.00 2 0 1 0 0 0 1 0 0
.........................................................AAGTCGTCAATGTCGCTGAAACTAG.................................................................................... 25 0 1 2.00 2 0 0 0 0 2 0 0 0
...............................................................TCAATGTCGCTGAAACTAGCT.................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.....................................................................TCGCTGAAACTAGCTAGGAAATAATT....................................................................... 26 0 1 2.00 2 0 0 0 0 0 2 0 0
......................................................................CGCTGAAACTAGCTAGGAAATAATT....................................................................... 25 0 1 2.00 2 0 0 0 1 0 1 0 0
............................................GAGTTTCATTCTAATGTCGT...................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................ATGTCGCTGAAACTAGCTAGGAAATA.......................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................GTCGCTGAAACTAGCTAGGAAATAAT........................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................CGCTGAAACTAGCTAGGAAATAATTCA..................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................................TTACCTTTGCCCGTAGCT............ 18 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................ATGTCGCTGAAACTAGCTAG................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 1 0
.................................................................................................................ATCGTTGTTATGCGAATCCGCCAT............................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................TGAATGTATATCGTTGTTATG......................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................TCGCTGAAACTAGCTAGGAAAT........................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................AGGAAATAATTCACCTGAATTGAATGT....................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................TCACCTGAATTGAATGTATATCGTTGT............................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................ATATCGTTGTTATGCGAATCCGCCAT............................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................TGCGAATCCGCCATTACCT........................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................CGTCAATGTCGCTGAAACTAGCTAGG............................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................AGTCGTCAATGTCGCTGAAACT...................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................TGAAACTAGCTAGGAAATAATTCACCT.................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................CGCTGAAACTAGCTAGGAAATAAT........................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................ATGTCGCTGAAACTAGCTAGGAAATAAT........................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................AGTCGTCAATGTCGCTGAAACTAGCT.................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0
...........................................................TTCGTCAATGTCGCTGAAACTA..................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0
...................................................................................................TGAATTGAATGTATATCGTTGTTA........................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1
...........................................................................................................ATGTATATCGTTGTTATGCGAATCCGC................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................ATCGAGTTTCATTCTAAAGTC........................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0
...................................................................................TAGGAAATAATTCACCTGA................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................TCGCTGAAACTAGCTAGGAAA............................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................CCTTTGCCCGTAGCT............ 15 0 2 0.50 1 0 0 1 0 0 0 0 0
..................................................................................................................................................CCGTAGCTGAATCCAGGGC. 19 3 9 0.11 1 0 0 0 0 1 0 0 0
..........................................................................................................................ACGCGAGTCCGCCATTA........................... 17 2 9 0.11 1 0 0 0 0 0 1 0 0
................................................................CAATGACGCTGAAACTAA.................................................................................... 18 2 10 0.10 1 0 0 0 0 1 0 0 0
.................................................................................................CCTGAAGTGGATGTATA.................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:21116555-21116720 - dsi_17730 CCACACA----TTCTATAT--GCATATCCACTCTTGAATAAACGGAT-TA--GCT-CAAAGT-------AAGATTTC--------------------------------AGC-AGTTACAGCGACTTTGATCGATCCTTTATTAAGTGGACTTAACTTACATATAGCAACAATA--CGCTTAGGCGGTAATGGAAACGGGCATCGACTTGG----------GGACCGA
droSec2 scaffold_23:510843-511008 - CCACACA----TTCTATAT--GCATATCCACTCTTGAATAAACGGAT-TA--GCT-CAAAGT-------AAGATTTT--------------------------------TGC-AGTTACAGCGACTTTGATCGATCCTTTATTAAGTGGACTTAACTTACATATAGCAACAATA--CGCTTAGGCGGTAATGGAAACGGGCATCGCCTTGG----------GGACCGA
dm3 chr2R:20654168-20654333 - CCACACA----TTCTATAT--GCATATCCACTTTTGAATAAACGGAT-TA--GAT-CAAAGT-------AAGATTTT--------------------------------AGC-AGTTACAGCGACTTTGATCGATCCTTTATTAAGTGGACTTAACTTACATATAGCAACAATA--CGCTTAGGCGGTAATGGAAACGGGCATCGCCTTGG----------GGACCGA
droEre2 scaffold_4845:22016184-22016349 - CCACACT----TTCTAAAT--GCACATCCACTCTTGAATAAACGGAT-TA--GTT-AAAAGT-------AAGATTTT--------------------------------AGC-AGTTACAGCGACTTTGATCGATCCTTTATTTAGGGGACTTAACTTACATATAGCAACAATA--CGCTTAGGCGGTAATGGAAACGGAAATCGCCTTGA----------GGACCGA
droYak3 2R:20613625-20613797 - CCACACT----TTCTATAT--GCACATCCACTCTTGAATAAACGGAT-TA--GTT-AAAAGTTAAAACTATGATTTT--------------------------------AGC-AATTACAGCGACTTTGATCGATCCTTTATTAAGTGGACTTAACTTACATATAGCAACAATA--CGCTTAGGCGGTAATGGAAACGGGTATCGCCTTGG----------GGACCGA
droEug1 scf7180000409464:1011443-1011604 - CCACACT----T----TAT--GCATATCCAGTTTTGAATAAACGGCT-AA--GTT-GTCAGT-------ACGACTTC--------------------------------ATC-AGTTACAGCGGTTTTTATAGATCCTTTATTACTTGGACTTAACTTACATTTAGTAACAATA--TTCTTAGGTGGTAGTGGAAACGGAAAACGTATTGG----------GTACCAA
droBia1 scf7180000301754:3240888-3241039 + ACACGCA----CTCTATAT--GCATAACCACTCTTGAATAAACGTCT-TA--GTA---------------------C--------------------------------AGC-AGTTACAGCGACTTTGATCGGTCTTTTATTACGTGGACTTAACTTACATGTAGCAACAATA--TACTTAGGAGGTAATGGAAACGGAAACCGCCTTGG----------GGACCG-
droTak1 scf7180000415805:594305-594475 + GCACACA----CTCTATATCTGCATAGCCAGACTTGAATAAACCGCT-TA--GTT-CGAAGT-------ACTATTTCAGTTATTC------------------------AGC-AATTACAGCGACTTTGATCGATCTTTTATTACGAGGGCTTAACCTACAGGTAGCAACAATATATACTTAGGAGGTAATGGAAACGGAAATCGCCTTGT-----------------
droEle1 scf7180000491107:381681-381831 + CCACACA----CTCTATAT--GCATATCCAGT-TTGAATAAACGTCTATA--GTT-CGAAG-------------------------------------------------------------ATCTTTTATCGATCATTTATTAAGTGGACTTAACTTACATTTAGCAACAATA--TACTTAGGAGGTAATGGAAACGGAAATCGCCTTCG----GGATCGGGACCGA
droRho1 scf7180000777251:249194-249344 + CCACACA----CTCTATAT--GCATATCCAGT-TTTAATAAACGTCTATA--GTT-CGAAGT-------------------------------------------------------------ACTTTGATCGATCCTTTATTACGTGGACTTAACTTACATTTAGCAACAATA--TACTTAGGAGGTAATGGAAACGGAAATCGCCTTGG----GGACCGGGACCGA
droFic1 scf7180000453858:851477-851640 + ACACACA----CTCTATAC--ACATAT---GTCTTGAATAAATAACT-TA--GTT-CACAGG-------ACGAATTC--------------------------------AGC-AGTTATAGCGACTTTAATCGATCCTTTATTACGTGGACTTAACTTACATTTAGCAACAATAT-TACTTAGACGGTAATGGAAACGGAAATCGCCTCGG----------GGACCGA
droKik1 scf7180000302476:2884643-2884819 - ACACACATACACTCTATAT--GT-TATCCAC----GAATAAAGAGCTCTA--GTTTCGAAGT-------ACGATTACAG-------------------------------GC-GGTTATAGCGACTTTGATCGATCTTTTATTACGTGGACTTAACTTACATTTAGCAACAACA--TACTTAG-AGGTAATGGAAACGGAAATCGCCTTGAGTGAGGACCGGGACCGA
droAna3 scaffold_13266:11529580-11529698 + TTT---A----ATCTATAT--GT-TATCCCGGCTTCAATAAACT-CT-CA--GTT-CGAAGT-------TCTACTTT-----TCG------------------------------ATGCCAAGAC-TTGATCCACTTTTTATA---------------ACATTTATCAACAATA--TACTTAG-AGGTAATGGAA---------------------------------
droBip1 scf7180000396547:938826-938947 - TTA--------ATCTATAT--GT-TATCCCGGCTTCAATAAACT-CT-TAGCGTT-CGAAGT-------TCTACTTT-----TCG------------------------------ATGCCGAGAC-TTGATCCACTTTTTATA---------------ACATTTATCAACAATATATACTTAG-AGGTAATGGAA---------------------------------
dp5 3:10871538-10871714 + ACATACA----TT-----------TATCTATGCTTGAATAAACGGCTTTA--GTT---------------------T-----TGCAACCCCATGGGGCATATGGAATACGACAAATTACAGCAACTTTGATCGGTATTTTATTACAT--TCTTAGCTTACATATAGCAACAAT---TACTTAG-AGGTAAAGCAAATGGAAAACGTCTTGAAT--GGATCGGAACCGA
droPer2 scaffold_4:6194533-6194709 + ACATACA----TT-----------TATCTATGCTTGAATAAACGGCTTTA--GTT---------------------T-----TGCAACCCCATGGGGCATATGGAATACGACAAATTACAGCAACTTTGATCGGTATTTTATTACAT--TCTTAGCTTACATATAGCAACAAT---TACTTAG-AGGTAAAGCAAATGGAAAACGTCTTGAAT--GGATCGGAACCGA
droWil2 scf2_1100000004513:79476-79525 - -------------------------------------------------------------------------------------------------------------------------------------------------GTAGGCTTAACTTACATGTAGCAACAATT--TACTTAA-CTTTAATGGAAACG------------------------------
droMoj3 scaffold_6496:4470654-4470668 - CCATATA----TGTTATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15074:327894-327931 + CCGTAAA----CTATATAC--AAATACTCATGTTTGTGTAAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCACACA----TTCTATAT--GCATATCCACTCTTGAATAAACGGAT-TA--GCT-CAAAGT-------AAGATTTC--------------------------------AGC-AGTTACAGCGACTTTGATCGATCCTTTATTAAGTGGACTTAACTTACATATAGCAACAATA--CGCTTAGGCGGTAATGGAAACGGGCATCGACTTGG----------GGACCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................AAACGGAT-TA--GCT-CAAAGT-------...............................................................................................................................................................1916.00604200000000000000
...................................................................................................................................................................................................ACGGGCATCGACTTGG----------GGACC..2116.00623000001000000000
..........................TCCACTCTTGAATAAACGGAT-TA--G...............................................................................................................................................................................2415.00523000000000000000
...............................TCTTGAATAAACGGAT-TA--GCT-C...........................................................................................................................................................................2215.00521000000000002000
.............................................................................................................AGC-AGTTACAGCGACTTTGATT................................................................................................2214.00400000000000022000
.............................................................................................................................TTTGATCGATCCTTTATTAAG..................................................................................2114.00420100000000001000
...........................CCACTCTTGAATAAACGGAT-TA--G...............................................................................................................................................................................2314.00422000000000000000
..................................TGAATAAACGGAT-TA--GCT-CA..........................................................................................................................................................................2013.00310200000000000000
.........................ATCCACTCTTGAATAAACGGAT-....................................................................................................................................................................................2213.00300300000000000000
..............................CTCTTGAATAAACGGAT-TA--GCT-............................................................................................................................................................................2213.00300300000000000000
.............................ACTCTTGAATAAACGGAT-TA--GCT-C...........................................................................................................................................................................2413.00320001000000000000
.....................................ATAAACGGAT-TA--GCT-CAAAGT-------...............................................................................................................................................................2113.00303000000000000000
.....................................ATAAACGGAT-TA--GCT-CAAA........................................................................................................................................................................1913.00302010000000000000
...............................TCTTGAATAAACGGAT-TA--GCT-CAAAGT-------A..............................................................................................................................................................2812.00200000002000000000
...............................TCTTGAATAAACGGAT-TA--GCT-............................................................................................................................................................................2112.00201000000010000000
..............................CTCTTGAATAAACGGAT-TA--GCT-C...........................................................................................................................................................................2312.00211000000000000000
........................................AACGGAT-TA--GCT-CAAAGT-------...............................................................................................................................................................1812.00200200000000000000
.................................TTGAATAAACGGAT-TA--GCT-CA..........................................................................................................................................................................2112.00211000000000000000
............................CACTCTTGAATAAACGGAT-TA--GCT-CAAA........................................................................................................................................................................2812.00202000000000000000
........................................AACGGAT-TA--GCT-CAAAGT-------AAGA...........................................................................................................................................................2212.00201100000000000000
...................................GAATAAACGGAT-TA--GCT-CAA.........................................................................................................................................................................2012.00201010000000000000
...................................GAATAAACGGAT-TA--GCT-CA..........................................................................................................................................................................1912.00220000000000000000
.......................................AAACGGAT-TA--GCT-CAAAGT-------AAA............................................................................................................................................................2212.00201000001000000000
..........................TCCACTCTTGAATAAACGGAT-TA--GCT-C...........................................................................................................................................................................2712.00220000000000000000
....................................AATAAACGGAT-TA--GCT-CA..........................................................................................................................................................................1812.00201100000000000000
............................CACTCTTGAATAAACGGAT-TA--GCT-CAAAG.......................................................................................................................................................................2912.00202000000000000000
.......................ATATCCACTCTTGAATAAACGGAT-....................................................................................................................................................................................2411.00110000000000000000
.......................................AAACGGAT-TA--GCT-CAAAGT-------AAGATTTC--------------------------------.......................................................................................................................2711.00100100000000000000
......................................TAAACGGAT-TA--GCT-CAAAGT-------AAGAT..........................................................................................................................................................2511.00100000001000000000
..................................TGAATAAACGGAT-TA--GCT-............................................................................................................................................................................1811.00100100000000000000
............................................................................C--------------------------------AGC-AGTTACAGCGACTTTGA..................................................................................................2111.00100000100000000000
.........................................................................................................................................TTTATTAAGTGGACTTAACT.......................................................................2011.00110000000000000000
..................................................................................................................GTTACAGCGACTTTGATCGATCCT..........................................................................................2411.00101000000000000000
........................TATCCACTCTTGAATAAAC.........................................................................................................................................................................................1911.00110000000000000000
...........................CCACTCTTGAATAAACGGAT-TA--GCT-CAAA........................................................................................................................................................................2911.00100010000000000000
.............................ACTCTTGAATAAACGGAT-TA--GCT-............................................................................................................................................................................2311.00100000000000001000
.................................TTGAATAAACGGAT-TA--GCT-............................................................................................................................................................................1911.00110000000000000000
........................................AACGGAT-TA--GCT-CAAAGT-------AAGAAA.........................................................................................................................................................2411.00101000000000000000
.............................................................................................................................TTTGATCGATCCTTTATTAAAAA................................................................................2311.00100000000100000000
...................................................................................................................................................................................TTAGGCGGTAATGGAAACGGG............................2111.00110000000000000000
..........................TCCACTCTTGAATAAACGGAT-TA--GCT-CAA.........................................................................................................................................................................2911.00100000000000001000
.............................................................................................................................TTTGATCGATCCTTTATTA....................................................................................1911.00110000000000000000
...............................TCTTGAATAAACGGAT-TA--GCT-CA..........................................................................................................................................................................2311.00101000000000000000
........................TATCCACTCTTGAATAAACGGAT-TA--GC..............................................................................................................................................................................2711.00100000001000000000
...............................TCTTGAATAAACGGAT-TA--GC..............................................................................................................................................................................2011.00100000000001000000
............................................................................C--------------------------------AGC-AGTTACAGCGACTTTG...................................................................................................2011.00100000100000000000
............TCTATAT--GCATATCCACTCTTGAATAAA..........................................................................................................................................................................................2811.00100000000010000000
........................TATCCACTCTTGAATAAAA.........................................................................................................................................................................................1911.00100100000000000000
........................TATCCACTCTTGAATAAACGGAT-T...................................................................................................................................................................................2411.00110000000000000000
.............................ACTCTTGAATAAACGGAT-TA--G...............................................................................................................................................................................2111.00110000000000000000
.............................................................................................................................TTTGATCGATCCTTTATTAAGT.................................................................................2211.00101000000000000000
................................CTTGAATAAACGGAT-TA--GCT-............................................................................................................................................................................2011.00101000000000000000
.....................................ATAAACGGAT-TA--GCT-CAAAGT-------AAGA...........................................................................................................................................................2511.00101000000000000000
................................CTTGAATAAACGGAT-TA--GC..............................................................................................................................................................................1911.00101000000000000000
.......................................AAACGGAT-TA--GCT-CAAAA.......................................................................................................................................................................1811.00100100000000000000
.................................TTGAATAAACGGAT-TA--GCT-CAAAGT-------AAA............................................................................................................................................................2811.00100000001000000000
....................................AATAAACGGAT-TA--GCT-CAAA........................................................................................................................................................................2011.00101000000000000000
..................................TGAATAAACGGAT-TA--GCT-C...........................................................................................................................................................................1911.00101000000000000000
...............ATAT--GCATATCCACTCTTGAATAAACGG.......................................................................................................................................................................................2811.00100010000000000000
.............CTATAT--GCATATCCACTCTTGAATAAAC.........................................................................................................................................................................................2811.00101000000000000000
.......................................AAACGGAT-TA--GCT-CAAAGT-------AAGA...........................................................................................................................................................2311.00101000000000000000
..............................CTCTTGAATAAACGGAT-TA--GCT-CA..........................................................................................................................................................................2411.00110000000000000000
...................................GAATAAACGGAT-TA--GCT-CAAA........................................................................................................................................................................2111.00100100000000000000
.................AT--GCATATCCACTCTTGAATAAAC.........................................................................................................................................................................................2411.00100010000000000000
..................................TGAATAAACGGAT-TA--GCT-CAAAGT-------...............................................................................................................................................................2411.00101000000000000000
...............................TCTTGAATAAACGGAT-TA--GCT-CAAAGT-------...............................................................................................................................................................2711.00100000001000000000
...................................GAATAAACGGAT-TA--GCT-CAAAGT-------A..............................................................................................................................................................2411.00101000000000000000
................................CTTGAATAAACGGAT-TA--GCT-CA..........................................................................................................................................................................2211.00100100000000000000
.........................ATCCACTCTTGAATAAACGGAT-TA--GC..............................................................................................................................................................................2611.00100000000001000000
.........................ATCCACTCTTGAATAAACGGAT-T...................................................................................................................................................................................2311.00100100000000000000
..................................TGAATAAACGGAT-TA--GCT-CAAAGT-------AA.............................................................................................................................................................2611.00100000000000010000
...................................................................................................................................................................................................ACGGGCATCGACTTGG----------GGAC...2011.00110000000000000000
.........................ATCCACTCTTGAATAAACGGAT-TA--G...............................................................................................................................................................................2511.00101000000000000000
.............................ACTCTTGAATAAACGGAT-TA--GC..............................................................................................................................................................................2211.00100000100000000000
..................T--GCATATCCACTCTTGAATAAACGGA......................................................................................................................................................................................2611.00100000001000000000
..............................................T-TA--GCT-CAAAGT-------AAGATTTC--------------------------------AG.....................................................................................................................2211.00101000000000000000
.......................................AAACGGAT-TA--GCT-CAAAG.......................................................................................................................................................................1811.00101000000000000000
..........................TCCACTCTTGAATAAACG........................................................................................................................................................................................1811.00101000000000000000
..................T--GCATATCCACTCTTGAATAAACGGAT-....................................................................................................................................................................................2711.00100000001000000000
..............................................................................................................................TTGATCGATCCTTTATTAAGT.................................................................................2111.00101000000000000000
.............................................................................................................................TTTGATCGATCCTTTATTAAAA.................................................................................2211.00100000000100000000
..........................TCCACTCTTGAATAAACGGAT-....................................................................................................................................................................................2111.00110000000000000000
......................................TAAACGGAT-TA--GCT-CAAAGT-------AAGATT.........................................................................................................................................................2611.00100000001000000000
................................................................................................................................GATCGATCCTTTATT.....................................................................................1520.50100000000001000000
droSec2
CCACACA----TTCTATAT--GCATATCCACTCTTGAATAAACGGAT-TA--GCT-CAAAGT-------AAGATTTT--------------------------------TGC-AGTTACAGCGACTTTGATCGATCCTTTATTAAGTGGACTTAACTTACATATAGCAACAATA--CGCTTAGGCGGTAATGGAAACGGGCATCGCCTTGG----------GGACCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................TT--------------------------------TGC-AGTTACAGCGACTTTGA..................................................................................................2212.0021001
...........................CCACTCTTGAATAAACGGAT-TA--GCT-............................................................................................................................................................................2512.0020011
.........................................................................................................................................................................................GGTAATGGAAACGGGCATCGC......................2112.0020200
............................CACTCTTGAATAAACGGAT-TA--GCT-CAAA........................................................................................................................................................................2811.0011000
................................CTTGAATAAACGGAT-TA--GCT-............................................................................................................................................................................2011.0010010
..............................................................................................................................TTGATCGATCCTTTATTAAGT.................................................................................2111.0010001
.................................TTGAATAAACGGAT-TA--GCT-CAAAGT-------...............................................................................................................................................................2511.0010100
............................CACTCTTGAATAAACGGAT-TA--GCT-CAA.........................................................................................................................................................................2711.0011000
.........................ATCCACTCTTGAATAAACGGA......................................................................................................................................................................................2111.0011000
...........................CCACTCTTGAATAAACGGAT-TA--GCT-C...........................................................................................................................................................................2611.0010010
..................................TGAATAAACGGAT-TA--GCT-CA..........................................................................................................................................................................2011.0010010
.......................................AAACGGAT-TA--GCT-CAAAGT-------...............................................................................................................................................................1911.0011000
...................................................................................................................................................................................TTAGGCGGTAATGGAAACGGG............................2111.0010100
.....................................ATAAACGGAT-TA--GCT-CAAAGT-------AAA............................................................................................................................................................2411.0010010
.................................TTGAATAAACGGAT-TA--GCT-C...........................................................................................................................................................................2011.0010100
.................................................................................................................................................................................................AAACGGGCATCGCCTTGG----------GGA....2111.0011000
...............................................................................................................................TGATCGATCCTTTATTAAGTG................................................................................2111.0010001
.......................................AAACGGAT-TA--GCT-CAAAGG-------...............................................................................................................................................................1911.0010100
...............................................................................................................................TGATCGATCCTTTATTAAGTGG...............................................................................2211.0010001
.............................................................................................................TGC-AGTTACAGCGACTTTG...................................................................................................1911.0010001
.............................ACTCTTGAATAAACGGAT-T...................................................................................................................................................................................1911.0010010
.............................................................................................................................TTTGATCGATCCTTTATTAAG..................................................................................2111.0010100
................................................................................................................................................................................................GAAACGGGCATCGCCTTGG----------GGT....2211.0010100
.......................ATATCCACTCTTGAATAAACGGA......................................................................................................................................................................................2311.0010010
..................................................................................................................................................................................................AACGGGCATCGCCTTGG----------GGAC...2111.0010100
.............................................................................................................TGC-AGTTACAGCGACTTTGATCGATCC...........................................................................................2711.0011000
..................................TGAATAAACGGAT-TA--GCT-CAA.........................................................................................................................................................................2111.0010010
.............................................................................................................TGC-AGTTACAGCGACTTTGA..................................................................................................2011.0010001
............................................................................................................................................................................TA--CGCTTAGGCGGTAATGGAAACGGG............................2611.0010100
.............CTATAT--GCATATCCACTCT..................................................................................................................................................................................................1911.0010010
...............................TCTTGAATAAACGGAT-TA--GCT-............................................................................................................................................................................2111.0010100
..............................................................................................................................................................................................TGGAAACGGGCATCGCCTTGG----------.......2111.0010001
.............CTATAT--GCATATCCACTCTTGAAT.............................................................................................................................................................................................2411.0010100
..........................TCCACTCTTGAATAAACGGAT-TA--GCT-C...........................................................................................................................................................................2711.0011000
.....................................ATAAACGGAT-TA--GCT-CAAA........................................................................................................................................................................1911.0010010
.........................ATCCACTCTTGAATAAACGGAT-TA--GC..............................................................................................................................................................................2611.0010010
....................................................................................................................................................................AGCAACAATA--CGCTTAGGCGGT........................................2211.0010001
dm3
CCACACA----TTCTATAT--GCATATCCACTTTTGAATAAACGGAT-TA--GAT-CAAAGT-------AAGATTTT--------------------------------AGC-AGTTACAGCGACTTTGATCGATCCTTTATTAAGTGGACTTAACTTACATATAGCAACAATA--CGCTTAGGCGGTAATGGAAACGGGCATCGCCTTGG----------GGACCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................TTTGATCGATCCTTTATTAAGT.................................................................................221142.0014200000000000000000000000000000000000001000000000001001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000200000110000001000001200000000011001300000000100000000000000000000001020030312125010100004000000000000010130100001000012000310002000220273120044110002102210032005301110502222400001100
..............................................................................................................................TTGATCGATCCTTTATTAAGT.................................................................................21146.00460000000000000000000000000000300000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000013010000102000000100000000030000000000000000100000010001011000000000000000000000100000000000010000000001000000001020100000010011000011002001121000101010101000
......................................................T-CAAAGT-------AAGATTTT--------------------------------AGC-AGT................................................................................................................21145.004500000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002001000000000000000000000000000000000000000000000002000000000000000100000000000000000000000000000000000012130000010012000010000102000011001421001101000
.............................................................................................................................TTTGATCGATCCTTTATTAAG..................................................................................21138.00380000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000110000002000100000000000000000000000000000000000000002000013000000000000000000000000100100001000002000002201000000202210000000000003110000001000010000000000000000
............................................................................T--------------------------------AGC-AGTTACAGCGACTTTGA..................................................................................................21121.00210000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000110010001001510000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000100010000000000000000000000000020000000000000000000000000
.....................................ATAAACGGAT-TA--GAT-CAAAGT-------...............................................................................................................................................................21117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000012000010000000000000000000000000000000000000000100100000000000000000000000000000000000000000100000000000000000000000000000010000010000000400001200000
...................................................................................................................TTACAGCGACTTTGATCGATC............................................................................................21117.00170000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000001000010310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010010000001000000000100100000000000000000001000
.............................................................................................................................TTTGATCGATCCTTTATTAAA..................................................................................21115.00150000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000001000000000000000000010001000100000000000000000000000000000000000000001000000000000000000000000000000100000000000000000000011010000010000100000000000000000000000000000000000001000
............................CACTTTTGAATAAACGGAT-TA--GAT-C...........................................................................................................................................................................25115.00150000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001030202000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010021000000
.............................................................................................................................TTTGATCGATCCTTTATTAA...................................................................................20115.00150000000000000000000000000000010000000000000000000100000000000000000000000000000000000000100000000000000100000000000000000000000000000000000000000000000000000000000000000010000110210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000100000000000100000000000001000
...........................CCACTTTTGAATAAACGGAT-TA--GAT-C...........................................................................................................................................................................26112.00120000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000130100000000000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000
...........................CCACTTTTGAATAAACGGAT-TA--GAT-CA..........................................................................................................................................................................27112.00120000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031104000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TGAATAAACGGAT-TA--GAT-CAAAGT-------...............................................................................................................................................................24112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100003000000000000000000000200000000000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000001010001000000
.............................................................................................................................TTTGATCGATCCTTTATTAAAA.................................................................................22111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000001000000000000000001100000000000000000000000000000000000000010000100000000000000000002000000100000001000000
.................................................................................................................................ATCGATCCTTTATTAAGTGGA..............................................................................21111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000020000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000100012000000000000000000000000000000000000000100001000000
...........................................................................TT--------------------------------AGC-AGTTACAGCGACTTTG...................................................................................................21111.00110000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100011000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000100000100000000100
..................................................................................................................................................................................................AACGGGCATCGCCTTGG----------GGAC...21110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000012102100000
..................................................................................................................................................................................CTTAGGCGGTAATGGAAACGG.............................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000000000000000100000000000000000000001000100000000002000000
...................................................................................................................................................................................TTAGGCGGTAATGGAAACGGG............................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000000000000000000010000010000000000000000000000000000100000000100100000
......................................................................AGATTTT--------------------------------AGC-AGTTACAGCGA........................................................................................................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000001001000000000000010
........................................AACGGAT-TA--GAT-CAAAGT-------AAG............................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000200000000000000000001000002000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100
......................................TAAACGGAT-TA--GAT-CAAAGT-------AAGATTT........................................................................................................................................................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
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droEre2
CCACACT----TTCTAAAT--GCACATCCACTCTTGAATAAACGGAT-TA--GTT-AAAAGT-------AAGATTTT--------------------------------AGC-AGTTACAGCGACTTTGATCGATCCTTTATTTAGGGGACTTAACTTACATATAGCAACAATA--CGCTTAGGCGGTAATGGAAACGGAAATCGCCTTGA----------GGACCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................ATAAACGGAT-TA--GTT-AAAAGT-------...............................................................................................................................................................2114.0040011110
............................................................................................................................................................................................AATGGAAACGGAAATCGCCTT...................2112.0020000200
..........................................................................TTT--------------------------------AGC-AGTTACAGCGACTTTGATC................................................................................................2512.0020000002
............................CACTCTTGAATAAACGGAT-TA--G...............................................................................................................................................................................2211.0011000000
............TCTAAAT--GCACATCCACTCTTGAATA............................................................................................................................................................................................2611.0011000000
...................................GAATAAACGGAT-TA--GTT-AAAAGT-------...............................................................................................................................................................2311.0010000100
............................................................GT-------AAGATTTT--------------------------------AGC-AGTTACAGCGACA......................................................................................................2611.0010000010
........................................AACGGAT-TA--GTT-AAAAGT-------...............................................................................................................................................................1811.0010000010
................................CTTGAATAAACGGAT-TA--GTT-AAAA........................................................................................................................................................................2411.0010000100
.................AT--GCACATCCACTCTTGAATAAAC.........................................................................................................................................................................................2411.0010000010
.........................ATCCACTCTTGAATAAACGGAT-....................................................................................................................................................................................2211.0011000000
...........................CCACTCTTGAATAAACGGA......................................................................................................................................................................................1911.0010000010
.................AT--GCACATCCACTCTTGAATAAACG........................................................................................................................................................................................2511.0010000010
.......................................AAACGGAT-TA--GTT-AAAAGT-------A..............................................................................................................................................................2011.0010000010
...............................TCTTGAATAAACGGAT-TA--GTT-AAAAG.......................................................................................................................................................................2611.0011000000
droYak3
CCACACT----TTCTATAT--GCACATCCACTCTTGAATAAACGGAT-TA--GTT-AAAAGTTAAAACTATGATTTT--------------------------------AGC-AATTACAGCGACTTTGATCGATCCTTTATTAAGTGGACTTAACTTACATATAGCAACAATA--CGCTTAGGCGGTAATGGAAACGGGTATCGCCTTGG----------GGACCGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................ATCCACTCTTGAATAAACGG.......................................................................................................................................................................................2012.00202000000000
.......................................AAACGGAT-TA--GTT-AAAAGT......................................................................................................................................................................1912.00200100010000
.................................TTGAATAAACGGAT-TA--GTT-AAAAGTT.....................................................................................................................................................................2611.00100000010000
...........TTCTATAT--GCACATCCACTCTT.................................................................................................................................................................................................2211.00101000000000
................................CTTGAATAAACGGAT-TA--GTT-............................................................................................................................................................................2011.00100100000000
...........................CCACTCTTGAATAAACGGA......................................................................................................................................................................................1911.00100100000000
.........................................................................................................................................................................................GGTAATGGAAACGGGTATCGCCTTGG----------.......2611.00100000010000
..............................CTCTTGAATAAACGGAT-TA--GTT-AAAAGTT.....................................................................................................................................................................2911.00100000010000
.............CTATAT--GCACATCCACTCTTGA...............................................................................................................................................................................................2211.00100100000000
......................................TAAACGGAT-TA--GTT-AAAAGT......................................................................................................................................................................2011.00100000010000
....................................AATAAACGGAT-TA--GTT-AAAAGTT.....................................................................................................................................................................2311.00101000000000
...........................CCACTCTTGAATAAACGG.......................................................................................................................................................................................1811.00100010000000
...................................GAATAAACGGAT-TA--GTT-AAAAGT......................................................................................................................................................................2311.00100000010000
droEug1
CCACACT----T----TAT--GCATATCCAGTTTTGAATAAACGGCT-AA--GTT-GTCAGT-------ACGACTTC--------------------------------ATC-AGTTACAGCGGTTTTTATAGATCCTTTATTACTTGGACTTAACTTACATTTAGTAACAATA--TTCTTAGGTGGTAGTGGAAACGGAAAACGTATTGG----------GTACCAASizeHit CountTotal NormTotal
No Reads
droBia1
ACACGCA----CTCTATAT--GCATAACCACTCTTGAATAAACGTCT-TA--GTA---------------------C--------------------------------AGC-AGTTACAGCGACTTTGATCGGTCTTTTATTACGTGGACTTAACTTACATGTAGCAACAATA--TACTTAGGAGGTAATGGAAACGGAAACCGCCTTGG----------GGACCG-SizeHit CountTotal NormTotal
No Reads
droTak1
GCACACA----CTCTATATCTGCATAGCCAGACTTGAATAAACCGCT-TA--GTT-CGAAGT-------ACTATTTCAGTTATTC------------------------AGC-AATTACAGCGACTTTGATCGATCTTTTATTACGAGGGCTTAACCTACAGGTAGCAACAATATATACTTAGGAGGTAATGGAAACGGAAATCGCCTTGT-----------------SizeHit CountTotal NormTotal
No Reads
droEle1
CCACACA----CTCTATAT--GCATATCCAGT-TTGAATAAACGTCTATA--GTT-CGAAG-------------------------------------------------------------ATCTTTTATCGATCATTTATTAAGTGGACTTAACTTACATTTAGCAACAATA--TACTTAGGAGGTAATGGAAACGGAAATCGCCTTCG----GGATCGGGACCGASizeHit CountTotal NormTotal
No Reads
droRho1
CCACACA----CTCTATAT--GCATATCCAGT-TTTAATAAACGTCTATA--GTT-CGAAGT-------------------------------------------------------------ACTTTGATCGATCCTTTATTACGTGGACTTAACTTACATTTAGCAACAATA--TACTTAGGAGGTAATGGAAACGGAAATCGCCTTGG----GGACCGGGACCGASizeHit CountTotal NormTotal
No Reads
droFic1
ACACACA----CTCTATAC--ACATAT---GTCTTGAATAAATAACT-TA--GTT-CACAGG-------ACGAATTC--------------------------------AGC-AGTTATAGCGACTTTAATCGATCCTTTATTACGTGGACTTAACTTACATTTAGCAACAATAT-TACTTAGACGGTAATGGAAACGGAAATCGCCTCGG----------GGACCGASizeHit CountTotal NormTotal
No Reads
droKik1
ACACACATACACTCTATAT--GT-TATCCAC----GAATAAAGAGCTCTA--GTTTCGAAGT-------ACGATTACAG-------------------------------GC-GGTTATAGCGACTTTGATCGATCTTTTATTACGTGGACTTAACTTACATTTAGCAACAACA--TACTTAG-AGGTAATGGAAACGGAAATCGCCTTGAGTGAGGACCGGGACCGASizeHit CountTotal NormTotal
No Reads
droAna3
TTT---A----ATCTATAT--GT-TATCCCGGCTTCAATAAACT-CT-CA--GTT-CGAAGT-------TCTACTTT-----TCG------------------------------ATGCCAAGAC-TTGATCCACTTTTTATA---------------ACATTTATCAACAATA--TACTTAG-AGGTAATGGAA---------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................AGT-------TCTACTTT-----TCG------------------------------ATGCCAAG.........................................................................................................2214.004220000
...................................CAATAAACT-CT-CA--GTT-CGAAG.......................................................................................................................................................................2114.004300001
...........ATCTATAT--GT-TATCCCGGCTT.................................................................................................................................................................................................2114.004100030
.........................................ACT-CT-CA--GTT-CGAAGT-------TCTAC..........................................................................................................................................................2113.003200010
.....................................ATAAACT-CT-CA--GTT-CGAAGT-------T..............................................................................................................................................................2113.003200010
......A----ATCTATAT--GT-TATCCCGGCT..................................................................................................................................................................................................2113.003300000
..T---A----ATCTATAT--GT-TATCCCGGC...................................................................................................................................................................................................2113.003210000
.............CTATAT--GT-TATCCCGGCTTCA...............................................................................................................................................................................................2113.003300000
..............TATAT--GT-TATCCCGGCTTCAA..............................................................................................................................................................................................2113.003300000
............................................................GT-------TCTACTTT-----TCG------------------------------ATGCCAAG.........................................................................................................2112.002001001
......................................................................CTACTTT-----TCG------------------------------ATGCCAAGAA-......................................................................................................2012.002100010
.........................ATCCCGGCTTCAATAAACT-CT-....................................................................................................................................................................................2112.002200000
..........................................................AAGT-------TCTACTTT-----TCG------------------------------ATGCCA...........................................................................................................2112.002200000
......................................................................CTACTTT-----TCG------------------------------ATGCCAAGAA-A.....................................................................................................2111.001000001
......................................TAAACT-CT-CA--GTT-CGAAGT-------T..............................................................................................................................................................2011.001100000
..............................................T-CA--GTT-CGAAGT-------TCTACTTT-----T.................................................................................................................................................2111.001000001
..........................TCCCGGCTTCAATAAACT-CT-CA--GTT-C...........................................................................................................................................................................2611.001010000
.................................TTCAATAAACT-CT-CA--GTT-C...........................................................................................................................................................................1911.001100000
...........................................T-CT-CA--GTT-CGAAGT-------TCTACTTT-----TCG------------------------------.................................................................................................................2511.001000001
..........................................CT-CT-CA--GTT-CGAAGT-------TCTC...........................................................................................................................................................1911.001100000
......................................................................CTACTTT-----TCG------------------------------ATGCCAAGA........................................................................................................1911.001000001
...............ATAT--GT-TATCCCGGCTTCA...............................................................................................................................................................................................1911.001100000
.................AT--GT-TATCCCGGCTTCAATA............................................................................................................................................................................................2011.001100000
..T---A----ATCTATAT--GT-TATCCCGGCA..................................................................................................................................................................................................2211.001010000
..........................................CT-CT-CA--GTT-CGAAGT-------TCTAC..........................................................................................................................................................2011.001100000
......A----ATCTATAT--GT-TATCCCGGCTT.................................................................................................................................................................................................2211.001010000
.............................................................T-------TCTACTTT-----TCG------------------------------ATGCCAAGA........................................................................................................2111.001000001
.................................TTCAATAAACT-CT-CA--GTT-CGA.........................................................................................................................................................................2111.001010000
............................................................GT-------TCTACTTT-----TCG------------------------------ATGCCAAGAA-AA....................................................................................................2511.001010000
.............................................CT-CA--GTT-CGAAGT-------TCTACTTT-----TCG------------------------------.................................................................................................................2411.001001000
............TCTATAT--GT-TATCCCGGCTTC................................................................................................................................................................................................2111.001010000
.......................................................................TACTTT-----TCG------------------------------ATGCCAAGAC-TTA...................................................................................................2211.001100000
..............TATAT--GT-TATCCCGGCTTCAATAAACT-.......................................................................................................................................................................................2711.001010000
...............ATAT--GT-TATCCCGGCTTCAAT.............................................................................................................................................................................................2111.001100000
..................................TCAATAAACT-CT-CA--GTT-CGA.........................................................................................................................................................................2011.001100000
.............................................................T-------TCTACTTT-----TCG------------------------------ATGCCAAG.........................................................................................................2011.001100000
...................................CAATAAACT-CT-CA--GTT-CGAAGT-------TCTT...........................................................................................................................................................2611.001010000
.............................................CT-CA--GTT-CGAAGT-------TCTACTT........................................................................................................................................................2011.001000010
droBip1
TTA--------ATCTATAT--GT-TATCCCGGCTTCAATAAACT-CT-TAGCGTT-CGAAGT-------TCTACTTT-----TCG------------------------------ATGCCGAGAC-TTGATCCACTTTTTATA---------------ACATTTATCAACAATATATACTTAG-AGGTAATGGAA---------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ACATACA----TT-----------TATCTATGCTTGAATAAACGGCTTTA--GTT---------------------T-----TGCAACCCCATGGGGCATATGGAATACGACAAATTACAGCAACTTTGATCGGTATTTTATTACAT--TCTTAGCTTACATATAGCAACAAT---TACTTAG-AGGTAAAGCAAATGGAAAACGTCTTGAAT--GGATCGGAACCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................ATGGAAAACGTCTTGAAT--GGA..........2112.0020000000200
............................................................................................TGGGGCATATGGAATACGA.....................................................................................................................1912.0020000000200
......................................................T---------------------T-----TGCAACCCCATGGGGCATATGGA...........................................................................................................................2511.0010100000000
.....CA----TT-----------TATCTATGCTTGAAT.............................................................................................................................................................................................1911.0010100000000
....................................................GTT---------------------T-----TGCAACCCCATGGGGCATATGG............................................................................................................................2611.0010010000000
...............................................TTA--GTT---------------------T-----TGCAACCCCATGGGG...................................................................................................................................2211.0010100000000
......................................................................................ACCCCATGGGGCATATGGAATACGAC....................................................................................................................2611.0010100000000
.........................................ACGGCTTTA--GTT---------------------T-----TGCAACCCC.........................................................................................................................................2211.0010100000000
.......................................AAACGGCTTTA--GTT---------------------T-----TGCAACCCC.........................................................................................................................................2411.0010100000000
..................................................................................................ATATGGAATACGACAAATTACAG...........................................................................................................2311.0010000001000
.....................................................................................AACCCCATGGGGCATATGGAATACGAC....................................................................................................................2711.0010100000000
......................................................................................ACCCCATGGGGCATATGGAAT.........................................................................................................................2111.0010100000000
...........................................GGCTTTA--GTT---------------------T-----TGCAACCCC.........................................................................................................................................2011.0010001000000
.......................................................................................CCCCATGGGGCATATGGAATACGACA...................................................................................................................2611.0010100000000
...........................................GGCTTTA--GTT---------------------T-----TGCAACCCCA........................................................................................................................................2111.0010100000000
............................................................................T-----TGCAACCCCATGGGGCATATGGA...........................................................................................................................2411.0010000100000
......A----TT-----------TATCTATGCTTGAATAAAC.........................................................................................................................................................................................2211.0010100000000
.................................TTGAATAAACGGCTTTA--GTT---------------------T-----TGC...............................................................................................................................................2411.0010010000000
.....................................................................................AACCCCATGGGGCATATGGA...........................................................................................................................2011.0010100000000
.........................ATCTATGCTTGAATAAACGG.......................................................................................................................................................................................2011.0010100000000
....................................AATAAACGGCTTTA--GTT---------------------T-----TG................................................................................................................................................2011.0010100000000
droPer2
ACATACA----TT-----------TATCTATGCTTGAATAAACGGCTTTA--GTT---------------------T-----TGCAACCCCATGGGGCATATGGAATACGACAAATTACAGCAACTTTGATCGGTATTTTATTACAT--TCTTAGCTTACATATAGCAACAAT---TACTTAG-AGGTAAAGCAAATGGAAAACGTCTTGAAT--GGATCGGAACCGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....ACA----TT-----------TATCTATGCTTGAATAAACGGCT.....................................................................................................................................................................................2812.002200000
..........................................CGGCTTTA--GTT---------------------T-----TGCAACCCCATGGGGC..................................................................................................................................2811.001010000
........................................AACGGCTTTA--GTT---------------------T-----TGCAACCCCATG......................................................................................................................................2611.001100000
.......................................AAACGGCTTTA--GTT---------------------T-----TGCAACCCC.........................................................................................................................................2411.001100000
droWil2
-------------------------------------------------------------------------------------------------------------------------------------------------GTAGGCTTAACTTACATGTAGCAACAATT--TACTTAA-CTTTAATGGAAACG------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droMoj3
CCATATA----TGTTATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CCGTAAA----CTATATAC--AAATACTCATGTTTGTGTAAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:59 PM