ID:

dsi_1773

 Coordinate:

3r:18705484-18705633 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

CAAGGATCTGTGCAGTTTGTCGGATATTTCAGATCATGAGGCCTCATTAGGTGAGTAAAAATGCATCATAACTGGATTCCCATATATAATATTATATTATATTTACTTTGGCCAAGTGCTAACCCATTTCCTATATCGGTTTCATATGGCCTCTGTGGCTCGTTTTGCTTGCTCCTTCACTTCATATTTTGTTTGTTGAATGGCATTTCGAGGTCTGGCGAGCTTTTGATAACAGATTTCCAAGAAATGG
**************************************************((((((((((..((........(((....))).((((((((...)))))))).(((...(((((.(((..((((.((.......)).)))).))).)))))...)))))...))))))))))............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..........................TTTCAGATCAAGAGG................................................................................................................................................................................................................. 15 1 12 2.75 33 0 14 8 0 7 2 2
......................GATATTTCAGATCATGAGGCC............................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
....GATCTGTGCAGTTTGTCGGA.................................................................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0
....................CGGATATTTCAGATCATGAGGC................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0
........................TATTTCAGATCATGAGGCCTCATTAGAA...................................................................................................................................................................................................... 28 2 1 1.00 1 0 0 1 0 0 0 0
...................TCGGATATTTCAGATCATGAGGCCC.............................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
...................TCGGATATTTCAGAT........................................................................................................................................................................................................................ 15 0 3 0.33 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................GAGCTTATGATAACCGA.............. 17 2 6 0.17 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................GATACCATACTTCCAAGAAA... 20 3 7 0.14 1 0 1 0 0 0 0 0
........................TTTTTCAGATCAAGAGGC................................................................................................................................................................................................................ 18 2 10 0.10 1 1 0 0 0 0 0 0
.......CTGTGCAGATTGTCAGA.................................................................................................................................................................................................................................. 17 2 13 0.08 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................CAGACTTCCAAGAAA... 15 1 19 0.05 1 0 0 0 0 1 0 0
..............................................................................................................................................................CTCGTTTGGCTTGATCC........................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

GTTCCTAGACACGTCAAACAGCCTATAAAGTCTAGTACTCCGGAGTAATCCACTCATTTTTACGTAGTATTGACCTAAGGGTATATATTATAATATAATATAAATGAAACCGGTTCACGATTGGGTAAAGGATATAGCCAAAGTATACCGGAGACACCGAGCAAAACGAACGAGGAAGTGAAGTATAAAACAAACAACTTACCGTAAAGCTCCAGACCGCTCGAAAACTATTGTCTAAAGGTTCTTTACC
**************************************************((((((((((..((........(((....))).((((((((...)))))))).(((...(((((.(((..((((.((.......)).)))).))).)))))...)))))...))))))))))............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
.............................GTCTAGGACTCCGGAGTGATT........................................................................................................................................................................................................ 21 3 2 205.50 411 297 93 17 4 0 0 0 0 0 0 0
.............................GTCTAGGACTCCGGAGTG........................................................................................................................................................................................................... 18 2 7 158.29 1108 787 249 56 15 0 0 0 0 1 0 0
.............................GTCTAGGACTCCGGAGTGA.......................................................................................................................................................................................................... 19 2 3 95.00 285 199 69 10 6 0 1 0 0 0 0 0
.............................GTCTAGGACTCCGGAGTGAT......................................................................................................................................................................................................... 20 2 2 70.50 141 108 27 1 3 0 2 0 0 0 0 0
............................CGTCTAGGACTCCGGAGTGA.......................................................................................................................................................................................................... 20 3 4 64.00 256 170 65 10 11 0 0 0 0 0 0 0
............................CGTCTAGGACTCCGGAGTGAT......................................................................................................................................................................................................... 21 3 2 52.00 104 57 39 2 6 0 0 0 0 0 0 0
............................CGTCTAGGACTCCGGAGTG........................................................................................................................................................................................................... 19 3 17 30.24 514 291 175 31 17 0 0 0 0 0 0 0
.............................GTCTAGGACTCCGGAGTGATTC....................................................................................................................................................................................................... 22 3 1 29.00 29 19 5 0 4 0 1 0 0 0 0 0
............................CGTCTAGGACTCCGGAGT............................................................................................................................................................................................................ 18 2 2 14.00 28 10 10 3 5 0 0 0 0 0 0 0
.............................GTCTAGTACTCCGGAGTG........................................................................................................................................................................................................... 18 1 1 9.00 9 8 1 0 0 0 0 0 0 0 0 0
...............................CTAGGACTCCGGAGTGATTC....................................................................................................................................................................................................... 20 3 3 5.33 16 6 9 0 1 0 0 0 0 0 0 0
................................TAGGACTCCGGAGTGATT........................................................................................................................................................................................................ 18 3 20 4.20 84 38 27 1 16 0 1 0 0 1 0 0
............................CGTCTAGTACTCCGGAGTGATT........................................................................................................................................................................................................ 22 3 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0
................................TAGGACTCCGGAGTGATTC....................................................................................................................................................................................................... 19 3 11 4.00 44 22 13 4 5 0 0 0 0 0 0 0
............................CGTCTAGTACTCCGGAGTG........................................................................................................................................................................................................... 19 2 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0
...............................CTAGGACTCCGGAGTGATT........................................................................................................................................................................................................ 19 3 9 4.00 36 19 15 0 2 0 0 0 0 0 0 0
..............................TCTAGGACTCCGGAGTGATT........................................................................................................................................................................................................ 20 3 3 3.67 11 3 0 1 7 0 0 0 0 0 0 0
..............................TCTAGGACTCCGGAGTGA.......................................................................................................................................................................................................... 18 2 3 3.67 11 4 1 0 6 0 0 0 0 0 0 0
..............................TCTAGTACTCCGGAGTG........................................................................................................................................................................................................... 17 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
.............................GTCTAGTACTCCGGAGTGATT........................................................................................................................................................................................................ 21 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.............................GTCTAGGACTCCGGAGTTAT......................................................................................................................................................................................................... 20 2 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
.............................GTCTAGTACTCCGGAGTGA.......................................................................................................................................................................................................... 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................GTCTAGGACTCCGGAGTTATT........................................................................................................................................................................................................ 21 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................GTCTAGGACTCCGGAGTGATC........................................................................................................................................................................................................ 21 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...............................CTAGGACTCCGGAGTGAT......................................................................................................................................................................................................... 18 2 4 1.75 7 4 2 0 1 0 0 0 0 0 0 0
...........................TCGTCTAGGACTCCGGAGT............................................................................................................................................................................................................ 19 3 13 1.62 21 7 10 1 2 0 1 0 0 0 0 0
............................CGTCTAGCACTCCGGAGTGAT......................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................GTCTAGGACTCCGGAGTT........................................................................................................................................................................................................... 18 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................GTCTAGGACTCCGGAGTTA.......................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................GTCTAGTACTCCGCAGTGATT........................................................................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................TCTAGGACTCCGGAGTGAT......................................................................................................................................................................................................... 19 2 2 1.00 2 0 1 0 1 0 0 0 0 0 0 0
...............................CTAGTACTCCGGAGTGATTC....................................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................CGTCTAGGACTCCGGAGTTAT......................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................GTCTAGTACTCCGGAGTGATTC....................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................GTCTAGCACTCCGGAGTGATT........................................................................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................TCTAGGACTCCGGAGTGATTC....................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................GTCTAGCACTCCGGAGTG........................................................................................................................................................................................................... 18 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
............................CGTCTAGCACTCCGGAGTG........................................................................................................................................................................................................... 19 3 7 0.57 4 2 1 1 0 0 0 0 0 0 0 0
...........................TCGTCTAGTACTCCGGAGTG........................................................................................................................................................................................................... 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.................................AGGACTCCGGAGTGATCC....................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.............................GTCTAGGACTCCGGAGTCATT........................................................................................................................................................................................................ 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.............................GTCTATGACTCCGGAGTGAT......................................................................................................................................................................................................... 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
...........................AAGGCTAGTGCTCCGGAG............................................................................................................................................................................................................. 18 2 7 0.29 2 0 0 0 0 0 0 2 0 0 0 0
............................GGTCTAGGACTCCGGAGTGAT......................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
............................AGTCTAATGCTCCGGAG............................................................................................................................................................................................................. 17 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
.............................GTCTAGGACTCCGGAGAGAT......................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.............................GTCTAGGACTCCGGAGGGAT......................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
................................TAGGACTCCGGAGTGAT......................................................................................................................................................................................................... 17 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
.................................AGGACTCCGGAGTGAT......................................................................................................................................................................................................... 16 2 20 0.15 3 0 0 0 0 0 0 0 2 0 1 0
..............................TCTAGGACTCCGGAGTG........................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
................................................................TAGAATTGGCCTAAGGGAA....................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 1 0 0 1
.............................GTCTATGACTCCGGAGTGA.......................................................................................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................CTTAGAATTGGCCTAAGGG......................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 1 0 0 0 0 0 0 1
............................GGTCTAGGACTCCGGAGT............................................................................................................................................................................................................ 18 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
................................................................TAGAATTGGCCTAAGGG......................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................CTACTGTCTAAAGGT........ 15 1 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0
...............................CTAGCACTCCGGAGTGATT........................................................................................................................................................................................................ 19 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0
............................AGGCTAATACTCCGGAG............................................................................................................................................................................................................. 17 2 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................CTATTGTCTAAAAGTTCC..... 18 2 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................ACACTATGGTCTAAAGATT....... 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
...........................CCGTCTAGGACTCCGGAGT............................................................................................................................................................................................................ 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
...........................GCGTCTAGGACTCCGGAGT............................................................................................................................................................................................................ 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ATTGTCTAAAAGTTC...... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...........................AAGACTAATGCTCCGGAG............................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:18705434-18705683 - dsi_1773 CA-------AGGATCT------------GTGCAGTTTGTCGGATATTTCAGATCATGAGGCCTCATTAGGTGAGT-AA---AAA--------TGCATCATA----ACTGGA-------------------------------------------TTCCCATATATAA-TAT----TATATTATATTTACTTTGGCCAAGTGCTA---------A----------------------CCCATT-TCCTATATCGGTTTC----------ATATGGCCTCTGTG----GCTC------------------GTTTTGCT-TGCTCCTTCACTTCATA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG-CT-------T-----TTGAT----AACAGATTTCCAAGAAA-TGG--------
droSec2 scaffold_0:19527634-19527869 - CA-------AGGATCT------------GTGCAGCTTGTCGGATATTTCAGATCATGAGGCCTCATTAGGTGAGT-AA---AAA--------TGCATCATA----ATTGT---------------------------------------------TCCCATATATAA--------TATATTATATTTACTTTGGCCAAGTGCTA---------A----------------------CCCATT-TCCTATATCGGTTTC----------ATATG-------------TCTC------------------GTTTTTCT-TGCTCCTTCACTTCATA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG-CT-------T-----TTGAT----AACAGACTTCCAAGAAT-TGG--------
dm3 chr3R:19163425-19163667 - CA-------AGGATCT------------GTGCAGTTTGTCGGATATTTCAGATCATGAGGCATCATTAGGTGAGT-AA---AAA--------CCCATCATA----AGTGT---------------------------------------------TTCAATATTT----------TATATTATATTTACTTTGGCCAAGTGCTA---------A----------------------CCCATT-TCCTATATCGGTTTC----------ATATGGCCTCTATG----GCTC------------------GTTTTTCT-TGCTCCTTCACTTTATA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG-CT-------T-----TTGAT----AACAGATTTCCAAGAAA-TGA--------
droEre2 scaffold_4820:8889349-8889586 + CA-------AAGATCT------------GTGCAGCTTGTCGGATATTTCAGATCATGAGGCGTCATTAGGTGCGT-AA---GAA--------CCC---------------------------------------------------------------AATATATCAT-ATTATATGCGGACTGTTTACTTTGGCAAAGTGCTA---------A----------------------CCCATT-TGCTGTATCGGTTTC----------ATATGGCCTTTATA----GCTC------------------TTTTTTCT-TGCTCTTTCACTTCATA---TTTT--------------GTTTGTTATATGGCACTT------------CGAGGTCTGGG--GAG-CT-------T-----GTGAT----AACAGATTTCCAAGAAA-TGG--------
droYak3 3R:20041166-20041422 - CA-------AGGATCT------------GTGCAGTTTGTCGGATATTTCAGATCAAGAGGCGTCATTGGGTGAGT-AA---AAA-------CCCCATCATA----ACTGT---------------------------------------------GTTAATATATCGT-ATAATATACGAATTGTTTACATGGGCCAAGTGCTA---------AC---------------------CCTATT-TGCTATATCGGTTTC----------ATATGGGTTTTATG----GCTC------------------TTTTTTTTCTGCTCTTTCACTTCATA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAGCTT-------T-----TTGAT----AACAGATTTCCAAGAAAATGG--------
droEug1 scf7180000409473:179755-180006 + CA-------AGGATCT------------CTGCAGTTTGTCGGACATTTCCGATCATGAGGAGTCATTAGGTGAGT-GG---AAA-------ACCCAACATA----ATAAT---------------------------------------------G-GTATATATAA-------ATATAGATTGTTTACCCTGGCCAAGTGCTA----ACCTAA----------------------CCCATT-TGCTATATCGGTTTC----------GTATT-CCTTTATA----ACTC------------------TTCTTG----GTTTTTTCTCTTGATATTTTTTT--------------GTTTGTTTTATGGCTTTT------------CGAGGTCTGGC--GAG--T-------T--ATTCTGAT----AACAGATTTCCAAGAAA-TGG--------
droBia1 scf7180000302075:4676434-4676678 - CA-------AGGATCT------------CTGCAGTTTATCGGATATTTCAGATCATGAGCCGGCGTTGGGTGAGT-AA---AAA--------CCCATCATA----ACCAA---------------------------------------------GCCAATATACGATT-----GTGCGGATTGTTTACTTTGGCCGAGTGCTA---------A----------------------CTTATT-TGCTGTATCGCTTTC----------ATGCG-CC-TTATA----CCTC------------------TTTTTTCT-TGTGTTTCTCCTTTGTA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG--T-------T-----CTGAT----AACAGATTTCCAAGAAA-TGG--------
droTak1 scf7180000414295:238495-238742 - CA-------AGGATCT------------CTGCAGTTTATCGGATATTTCAGATCATGAGGCGTCATTGGGTGAGT-AC---AAAAAAA---CCCCATCATAACCAGC--------------------------------------------------GATTATATTATT-----GTGCGGATTGTTTACTTTGGCCAAGTGCTC---------A----------------------CCCATT-TGCTATATCGGTTTC----------ATACG-CCTTTATA----CCTC------------------TTTTTTCT-TGCTTTTT--CTTTATA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG--T-------T-----CTGAT----AACAGATTTCCAAGAAA-TGG--------
droEle1 scf7180000491280:282850-283099 - CA-------AGGACTTG------CCCATCTGCAGTTTATCGGATATTTCAGATCATGAGGCGTCTTTGGGTGAGT-AA---AAA-------AACCATCACA----GCAAT---------------------------------------------GCCAATATA--A-T-----GTACGGATTGTTTACTTTGGCCAAGTGCTA---------A----------------------CCCATT-CGCTATATCAGTTTC----------ATATT-GCTAAATA----CCAC------------------TTTTTTCC-TTTTATTTCTCTCTATA---TTTT--------------GTTTGTTGAATGGCTTTT------------CGAGGTCTGGC--GAA--T-------T-----CTGAT----AACAGATTTCCAAGAAA-TGG--------
droRho1 scf7180000780099:123529-123751 - C-------------------------------TGTTTATCGGATATTTCAGATCATGAGGCGTCTTTGGGTGAGT-AA---AAA-------AACCATCACA----GCAAT---------------------------------------------GTCAATATA--A-T-----TTGTAGATTGTTTACTTTGGCCCAGTGCTT---------A----------------------CCCAGT-TTCTATATTGGTTTC----------ATATT-GCTATATA----CCAC------------------TTTT----------TTTCTCTTTATA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG--T-------T-----CTGAT----AACAGATTTCCAAGAAA-TGG--------
droFic1 scf7180000453906:689433-689681 + TCACCATCGA-GAACT------------CTTCAGTTTGTCGGATAACTCAGATCAAGAT---TCGTTGGGTAAGT-GA---AAT-------CCCCGCAATA----ATAAA---------------------------------------------ACCAACATA--A-T-----GTGCGAATTGTTTACACTGGCCAAGCGACA---------A----------------------CCCATTTTGCCATATCGGTTTC----------GAATT-CTTTTATA----ACTA------------------T-TTTTCT-TGCCTTTTCTCTTCATATT-TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG--T-------T-----CTGAT----AACAGATTTCCAAGAAA-TGG--------
droKik1 scf7180000302307:397607-397859 + CA-------AGGATCTG------CCCATCTGCAGTTTATCGGATATTTCAGATCATGAGGCGTCGTTGGGTGAGT-AT---AATATAAAGAGCCTATTATT----ATCAT---------------------------------------------GACAATACA--T-T-----GTGCGGATTGTTTACTTTGGCCAAGTGCTT--------AA----------------------CCCATT-TGCTATATCGGTTTC----------GTATT-CTTTTATA----CGGT------------------T-TTTTTT-TAC------TCTTTATT---TTTT--------------GTTGGTTAAATGGCATTT------------CGAGGTCTGGC--GAGGCT-------T-----TTGAT----AACGCATTTCCAAGAAA-TGG--------
droAna3 scaffold_13340:8224618-8224824 + CA-------AGGACTTGCCGCCTCCGATCTGCAGTCTCTCGGATATTTCAGATCATGAGGCCTCATTGGGTGAGT-ACCTAGAA----------------------------------------------------------------------------------------------------------CTGGACAAGTGCC-------TTAA----------------------CCC--------ACATTGGAATC----------ATACT-CTTT----GCTC----AGAAATATA-----------------------CTTTATTTCGTA---TTTG--------------GTTTGCTGAATGGCACTC------------TGAGGTCTGCT--GGC--T-------T--GATAACAG----AACAGAATTCCAAGAAA-TGC--------
droBip1 scf7180000396708:610798-611007 - CA-------AGGACTTG------CCGATCTGCAGTCTATCGGATATTTCAGATCATGAGGCATCATTGGGTGAGTTACCGAGAA----------------------------------------------------------------------------------------------------------CTGGCCAAGTGCC-------TTAA----------------------CCC--------ACATTAGATTC----------ATACT-CCCT----ACCC----AGTAATAGACTT------------------TATTTCGCTTGATG---TTTG--------------GTTTGCTGAATGGCACTT------------TGAGGTCTGCT--GAG--TTGTGGG-C-----TTGAT----AACAGAGTTCCAAGAAA-TGC--------
dp5 2:9462446-9462691 + CA-------AGGAT---------------------TTATCGGATATTTCAGATCATGAGGCCTCCTTAGGTGAGT-AC---AGTCGAA----CCCA------------------------------------------------------------CCCATATATCAT----------------TTTACGATGACACACTGCCAGAAAAGAAAC----------------------CCCATT-CGCAATGTAGCTTATTCCTTCATTTATTTG-------------ATT-TGTATTATTCTGTCTTTGGTTTTGC----------------TTG---TTTT--------------GTTTGTTGAATGGAATTT------------TGTGGTCTT----------TGTGGGTTCCAATTTGAT----AACAGATTTCCAAGAAT-TTCGTACTCCA
droPer2 scaffold_0:11017159-11017404 - CA-------AGGAT---------------------TTATCGGATATTTCAGATCATGAGGCGTCCTTGGGTGAGT-AC---AATCGAA----CCCA------------------------------------------------------------CCCATATATCAT----------------TTTACGATGACACACTGCCAGAAAAGAAAC----------------------CCCACT-CGCAATATAGCTTATTCCATCATTTATTTG-------------ATTT-GTATTATTCTGTCTTTGGCTTTG----------------CTTG---TTTT--------------GTTTGTTGAATGGAATTT------------TGTGGTCTT----------TGTGGGTTCCAATTTGAT----AACAGATTTCCAAGAAT-TTCGTACTCCA
droWil2 scf2_1100000004902:11725584-11725786 + CA-------AGGATTTACCACCGCCCATATGCAGTTTATCGGATATTTCAGATCATGAGGCATCGCTGGGTAAGT-GT---AAT-------TATAGCAAAT--------T---------------------------------------------TCCAATTAA----CTT----TATATAATG-----------CAAATAT-----------------------------------------T-------------------------------------------------------------------------------------------------GTTAACCCAATTTCGTATAT--AAAAACATTTTGTTGTTGCTTTCAAAGACCGATAACAGGCC-------G--AATAAAAA----AGGCGATTTCTAAGAAT-TGA--------
droVir3 scaffold_13047:13475165-13475231 - CA-------AAGATTTG------ACTGTATGCAGTTTATCGGATATTTCAGATCATGAAGCCTCGCTGGGTAAGT-AA---TAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:10714107-10714206 - CA-------AGGATCTG------CCAGTTTGCAGTTTATCGGATATTTCAGATCATGAAGCCTCCCTGGGTAAGT-GT---GAA-------CCGTGAAATT----TTATT---------------------------------------------TTTAA--------TTT----TATGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAT----------------------
droGri2 scaffold_15074:593559-593846 + CA-------AGGACTTG------CCTGTGTGCAGATTATCGGATATTTCAGATCATGAGGCCTCACTGGGTAAGT-GT---AAA-------GCACACAACA----TTTTTTTTATTAATCTAAGAATCGCTTTTAAATCAAATTTGATTAAACT-G-GTG-------A----------------CTTCCAATGG--GACTCCCAAAATAAAAAA-AATAGTTTTTGCCTCGTATTTCCAAAT-TCCAATGTACCCAATGAGA-----------------------------------------------------A-TGTCGCAGCA--------------GTTAACTCTATTTTGA-TAT--GGGAGC---T------------AATGTTGCAGA--CAT-TT-------A-----TAGATAACAAACACATTTCTTGGAAA-TGG--------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CA-------AGGATCT------------GTGCAGTTTGTCGGATATTTCAGATCATGAGGCCTCATTAGGTGAGT-AA---AAA--------TGCATCATA----ACTGGA-------------------------------------------TTCCCATATATAA-TAT----TATATTATATTTACTTTGGCCAAGTGCTA---------A----------------------CCCATT-TCCTATATCGGTTTC----------ATATGGCCTCTGTG----GCTC------------------GTTTTGCT-TGCTCCTTCACTTCATA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG-CT-------T-----TTGAT----AACAGATTTCCAAGAAA-TGG--------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................GATATTTCAGATCATGAGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
...........GATCT------------GTGCAGTTTGTCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200000000000000
.......................................CGGATATTTCAGATCATGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...........................................TATTTCAGATCATGAGGCCTCATTAGAA................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
......................................TCGGATATTTCAGATCATGAGGCCC........................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
......................................TCGGATATTTCAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................1530.33100000010000000000
droSec2
CA-------AGGATCT------------GTGCAGCTTGTCGGATATTTCAGATCATGAGGCCTCATTAGGTGAGT-AA---AAA--------TGCATCATA----ATTGT---------------------------------------------TCCCATATATAA--------TATATTATATTTACTTTGGCCAAGTGCTA---------A----------------------CCCATT-TCCTATATCGGTTTC----------ATATG-------------TCTC------------------GTTTTTCT-TGCTCCTTCACTTCATA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG-CT-------T-----TTGAT----AACAGACTTCCAAGAAT-TGG--------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................CATGAGGCCTCATTAGGTGAGT-AA---......................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...........GATCT------------GTGCAGCTTGTCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
dm3
CA-------AGGATCT------------GTGCAGTTTGTCGGATATTTCAGATCATGAGGCATCATTAGGTGAGT-AA---AAA--------CCCATCATA----AGTGT---------------------------------------------TTCAATATTT----------TATATTATATTTACTTTGGCCAAGTGCTA---------A----------------------CCCATT-TCCTATATCGGTTTC----------ATATGGCCTCTATG----GCTC------------------GTTTTTCT-TGCTCCTTCACTTTATA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG-CT-------T-----TTGAT----AACAGATTTCCAAGAAA-TGA--------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................ATTTCAGATCATGAGGCATCATT....................................................................................................................................................................................................................................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000001000000000000000000
.........................................GATATTTCAGATCATGAGGCATC.......................................................................................................................................................................................................................................................................................................................................................................................................2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000020000
CA-------AGGATCT------------GTGCAGTTTGTCGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000022000
........................................GGATATTTCAGATCATGAGGCATC.......................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000020000000000020000
..........................................ATATTTCAGATCATGAGGCATCATT....................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000
.......................................CGGATATTTCAGATCATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
CA-------AGGATCT------------GTGCAGTTTGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000000
.........AGGATCT------------GTGCAGTTTGTCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GCATTT------------CGAGGTCTGGC--GAG-C....................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000
..............CT------------GTGCAGTTTGTCGGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................AATGGCATTT------------CGAGGTCTGGC--.........................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.A-------AGGATCT------------GTGCAGTTTGTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000
...................................................................................................................................................................................................................................................................................CTCTATG----GCTC------------------GTTTTTCT-TG........................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.....................................GTCGGATATTTCAGATCATGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TTCAGATCATGAGGCATCATT....................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................GAATGGCATTT------------CGAGGTCTGG............................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000
........................................GGATATTTCAGATCATGAGGCAT........................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000
.A-------AGGATCT------------GTGCAGTTTGTCGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................T-----TTGAT----AACAGATTTCCAAGA..............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
....................................................TCATGAGGCATCATTAGGTGA..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AGTTTGTCGGATATTTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................ATA---TTTT--------------GTTTGTTGAATGGC......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................TTGTCGGATATTTCAGATCATGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................ACTTTATA---TTTT--------------GTTTGTTGA...........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................................TTGTCGGATATTTCAGATCATGAGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ATGGCATTT------------CGAGGTCTGGC--.........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.................................GTTTGTCGGATATTTCAGATC.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................TGCAGTTTGTCGGATATTTCAGATCA................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................CAGTTTGTCGGATATTTCAGATCATG..............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.........AGGATCT------------GTGCAGTTTGTCGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................GATATTTCAGATCATGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................T-TGCTCCTTCACTTTATA---TTT...................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................T-------T-----TTGAT----AACAGATTTCCAAG...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TTGTTGAATGGCATTT------------CGAGGTCTGGC--.........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GTTTGTCGGATATTTCAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.............................................TTTCAGATCATGAGGCATCATTAGAC................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TGTTGAATGGCATTT------------CGAGGTCTGGC--.........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TTTCAGATCATGAGGCATC.......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
...........GATCT------------GTGCAGTTTGTCGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TTTCAGATCATGAGGCATCATT....................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GGATATTTCAGATCATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................GGTTTC----------ATATGGCCTCTATG----G........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TTTTTCT-TGCTCCTTCACTTT............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TCAGATCATGAGGCATCATT....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................GTGCAGTTTGTCGGATATTTCAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................GCAGTTTGTCGGATATTTCAGATCA................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TTGTTGAATGGCATTT------------CGAGG.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
...............T------------GTGCAGTTTGTCGGATATTTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TATCGGTTTC----------ATATGGCCTCTATG----G........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TATTTACTTTGGCCAAGTGCTA---------A----------------------CCC........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TGTTGAATGGCATTT------------CGAGGTC...............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
........................................GGATATTTCAGATCATGAGGCATCA......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ATGGCATTT------------CGAGGTCTGGC--G........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGAATGGCATTT------------CGAGGTCTGG............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................ATATTTCAGATCATGAGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............T------------GTGCAGTTTGTCGGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGC--GAG-CT-------T-----TTGAT----AAC..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATATTTCAGATCATGAGGCATCATTT...................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
....................................................................................................................................................................................................................................................................................................................................................T--------------GTTTGTTGAATGGCATTT------------CG....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................CATTT------------CGAGGTCTGGC--GAG-CT-------............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............T------------GTGCAGTTTGTCGGATATTTCAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TATTTCAGATCATGAGGCATCATTAGAA................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGAATGGCATTT------------CGAGGTCTG.............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CGGATATTTCAGATCATGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........................................TATTTCAGATCATGAGGCAT........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................CAGATCATGAGGCATCATT....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TGGC--GAG-CT-------T-----TTGAT----AAC..........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................GATATTTCAGATCATGAGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CT-------T-----TTGAT----AACAGATTTCCAA................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................TCGGATATTTCAGATCATGAGGCATC.......................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................TTTGTCGGATATTTCAGATCATGA.............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
CA-------AAGATCT------------GTGCAGCTTGTCGGATATTTCAGATCATGAGGCGTCATTAGGTGCGT-AA---GAA--------CCC---------------------------------------------------------------AATATATCAT-ATTATATGCGGACTGTTTACTTTGGCAAAGTGCTA---------A----------------------CCCATT-TGCTGTATCGGTTTC----------ATATGGCCTTTATA----GCTC------------------TTTTTTCT-TGCTCTTTCACTTCATA---TTTT--------------GTTTGTTATATGGCACTT------------CGAGGTCTGGG--GAG-CT-------T-----GTGAT----AACAGATTTCCAAGAAA-TGG--------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGATTTCCAAGAAA-TG.........1911.0010000010
.........................................................................................................................................................................ATTATATGCGGACTGTTTACTTTGGCA...................................................................................................................................................................................................................................................................2711.0010000010
............................................ATTTCAGATCATGAGGCGTC.......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
droYak3
CA-------AGGATCT------------GTGCAGTTTGTCGGATATTTCAGATCAAGAGGCGTCATTGGGTGAGT-AA---AAA-------CCCCATCATA----ACTGT---------------------------------------------GTTAATATATCGT-ATAATATACGAATTGTTTACATGGGCCAAGTGCTA---------AC---------------------CCTATT-TGCTATATCGGTTTC----------ATATGGGTTTTATG----GCTC------------------TTTTTTTTCTGCTCTTTCACTTCATA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAGCTT-------T-----TTGAT----AACAGATTTCCAAGAAAATGG--------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................GATCAAGAGGCGTCATTGGAA................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
....................................TGTCGGATATTTCAGATCAAGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................GGCATTT------------CGAGGTCTGGC--.........................................................1811.00100100000000
................................AGTTTGTCGGATATTTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.................................GTTTGTCGGATATTTCAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............................................TCAGATCAAGAGGCGTCATT....................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
droEug1
CA-------AGGATCT------------CTGCAGTTTGTCGGACATTTCCGATCATGAGGAGTCATTAGGTGAGT-GG---AAA-------ACCCAACATA----ATAAT---------------------------------------------G-GTATATATAA-------ATATAGATTGTTTACCCTGGCCAAGTGCTA----ACCTAA----------------------CCCATT-TGCTATATCGGTTTC----------GTATT-CCTTTATA----ACTC------------------TTCTTG----GTTTTTTCTCTTGATATTTTTTT--------------GTTTGTTTTATGGCTTTT------------CGAGGTCTGGC--GAG--T-------T--ATTCTGAT----AACAGATTTCCAAGAAA-TGG--------SizeHit CountTotal NormTotal
No Reads
droBia1
CA-------AGGATCT------------CTGCAGTTTATCGGATATTTCAGATCATGAGCCGGCGTTGGGTGAGT-AA---AAA--------CCCATCATA----ACCAA---------------------------------------------GCCAATATACGATT-----GTGCGGATTGTTTACTTTGGCCGAGTGCTA---------A----------------------CTTATT-TGCTGTATCGCTTTC----------ATGCG-CC-TTATA----CCTC------------------TTTTTTCT-TGTGTTTCTCCTTTGTA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG--T-------T-----CTGAT----AACAGATTTCCAAGAAA-TGG--------SizeHit CountTotal NormTotal
No Reads
droTak1
CA-------AGGATCT------------CTGCAGTTTATCGGATATTTCAGATCATGAGGCGTCATTGGGTGAGT-AC---AAAAAAA---CCCCATCATAACCAGC--------------------------------------------------GATTATATTATT-----GTGCGGATTGTTTACTTTGGCCAAGTGCTC---------A----------------------CCCATT-TGCTATATCGGTTTC----------ATACG-CCTTTATA----CCTC------------------TTTTTTCT-TGCTTTTT--CTTTATA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG--T-------T-----CTGAT----AACAGATTTCCAAGAAA-TGG--------SizeHit CountTotal NormTotal
No Reads
droEle1
CA-------AGGACTTG------CCCATCTGCAGTTTATCGGATATTTCAGATCATGAGGCGTCTTTGGGTGAGT-AA---AAA-------AACCATCACA----GCAAT---------------------------------------------GCCAATATA--A-T-----GTACGGATTGTTTACTTTGGCCAAGTGCTA---------A----------------------CCCATT-CGCTATATCAGTTTC----------ATATT-GCTAAATA----CCAC------------------TTTTTTCC-TTTTATTTCTCTCTATA---TTTT--------------GTTTGTTGAATGGCTTTT------------CGAGGTCTGGC--GAA--T-------T-----CTGAT----AACAGATTTCCAAGAAA-TGG--------SizeHit CountTotal NormTotal
No Reads
droRho1
C-------------------------------TGTTTATCGGATATTTCAGATCATGAGGCGTCTTTGGGTGAGT-AA---AAA-------AACCATCACA----GCAAT---------------------------------------------GTCAATATA--A-T-----TTGTAGATTGTTTACTTTGGCCCAGTGCTT---------A----------------------CCCAGT-TTCTATATTGGTTTC----------ATATT-GCTATATA----CCAC------------------TTTT----------TTTCTCTTTATA---TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG--T-------T-----CTGAT----AACAGATTTCCAAGAAA-TGG--------SizeHit CountTotal NormTotal
No Reads
droFic1
TCACCATCGA-GAACT------------CTTCAGTTTGTCGGATAACTCAGATCAAGAT---TCGTTGGGTAAGT-GA---AAT-------CCCCGCAATA----ATAAA---------------------------------------------ACCAACATA--A-T-----GTGCGAATTGTTTACACTGGCCAAGCGACA---------A----------------------CCCATTTTGCCATATCGGTTTC----------GAATT-CTTTTATA----ACTA------------------T-TTTTCT-TGCCTTTTCTCTTCATATT-TTTT--------------GTTTGTTGAATGGCATTT------------CGAGGTCTGGC--GAG--T-------T-----CTGAT----AACAGATTTCCAAGAAA-TGG--------SizeHit CountTotal NormTotal
No Reads
droKik1
CA-------AGGATCTG------CCCATCTGCAGTTTATCGGATATTTCAGATCATGAGGCGTCGTTGGGTGAGT-AT---AATATAAAGAGCCTATTATT----ATCAT---------------------------------------------GACAATACA--T-T-----GTGCGGATTGTTTACTTTGGCCAAGTGCTT--------AA----------------------CCCATT-TGCTATATCGGTTTC----------GTATT-CTTTTATA----CGGT------------------T-TTTTTT-TAC------TCTTTATT---TTTT--------------GTTGGTTAAATGGCATTT------------CGAGGTCTGGC--GAGGCT-------T-----TTGAT----AACGCATTTCCAAGAAA-TGG--------SizeHit CountTotal NormTotal
No Reads
droAna3
CA-------AGGACTTGCCGCCTCCGATCTGCAGTCTCTCGGATATTTCAGATCATGAGGCCTCATTGGGTGAGT-ACCTAGAA----------------------------------------------------------------------------------------------------------CTGGACAAGTGCC-------TTAA----------------------CCC--------ACATTGGAATC----------ATACT-CTTT----GCTC----AGAAATATA-----------------------CTTTATTTCGTA---TTTG--------------GTTTGCTGAATGGCACTC------------TGAGGTCTGCT--GGC--T-------T--GATAACAG----AACAGAATTCCAAGAAA-TGC--------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................AGTCTCTCGGATATTTCAGATC.................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
............ACTTGCCGCCTCCGATCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
CA-------AGGACTTG------CCGATCTGCAGTCTATCGGATATTTCAGATCATGAGGCATCATTGGGTGAGTTACCGAGAA----------------------------------------------------------------------------------------------------------CTGGCCAAGTGCC-------TTAA----------------------CCC--------ACATTAGATTC----------ATACT-CCCT----ACCC----AGTAATAGACTT------------------TATTTCGCTTGATG---TTTG--------------GTTTGCTGAATGGCACTT------------TGAGGTCTGCT--GAG--TTGTGGG-C-----TTGAT----AACAGAGTTCCAAGAAA-TGC--------SizeHit CountTotal NormTotal
No Reads
dp5
CA-------AGGAT---------------------TTATCGGATATTTCAGATCATGAGGCCTCCTTAGGTGAGT-AC---AGTCGAA----CCCA------------------------------------------------------------CCCATATATCAT----------------TTTACGATGACACACTGCCAGAAAAGAAAC----------------------CCCATT-CGCAATGTAGCTTATTCCTTCATTTATTTG-------------ATT-TGTATTATTCTGTCTTTGGTTTTGC----------------TTG---TTTT--------------GTTTGTTGAATGGAATTT------------TGTGGTCTT----------TGTGGGTTCCAATTTGAT----AACAGATTTCCAAGAAT-TTCGTACTCCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................GACACACTGCCAGAAAAGAAAC----------------------CC.........................................................................................................................................................................................................................2411.0010000000001
droPer2
CA-------AGGAT---------------------TTATCGGATATTTCAGATCATGAGGCGTCCTTGGGTGAGT-AC---AATCGAA----CCCA------------------------------------------------------------CCCATATATCAT----------------TTTACGATGACACACTGCCAGAAAAGAAAC----------------------CCCACT-CGCAATATAGCTTATTCCATCATTTATTTG-------------ATTT-GTATTATTCTGTCTTTGGCTTTG----------------CTTG---TTTT--------------GTTTGTTGAATGGAATTT------------TGTGGTCTT----------TGTGGGTTCCAATTTGAT----AACAGATTTCCAAGAAT-TTCGTACTCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................ATTT-GTATTATTCTGTCTTTGGCTTTG----------------CT...........................................................................................................................2912.002200000
...................................TTATCGGATATTTCAGATCATGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................................................................................................................................................................................................................................................................................................................................................TT--------------GTTTGTTGAATGGAATTT------------TGTG..................................................................2411.001000001
droWil2
CA-------AGGATTTACCACCGCCCATATGCAGTTTATCGGATATTTCAGATCATGAGGCATCGCTGGGTAAGT-GT---AAT-------TATAGCAAAT--------T---------------------------------------------TCCAATTAA----CTT----TATATAATG-----------CAAATAT-----------------------------------------T-------------------------------------------------------------------------------------------------GTTAACCCAATTTCGTATAT--AAAAACATTTTGTTGTTGCTTTCAAAGACCGATAACAGGCC-------G--AATAAAAA----AGGCGATTTCTAAGAAT-TGA--------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................TTATCGGATATTTCAGATC.................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
.......................................CGGATATTTCAGATCATGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
droVir3
CA-------AAGATTTG------ACTGTATGCAGTTTATCGGATATTTCAGATCATGAAGCCTCGCTGGGTAAGT-AA---TAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............TTG------ACTGTATGCAGTTTATCGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
..........................................ATATTTCAGATCATGAAGCCT........................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
CA-------AGGATCTG------CCAGTTTGCAGTTTATCGGATATTTCAGATCATGAAGCCTCCCTGGGTAAGT-GT---GAA-------CCGTGAAATT----TTATT---------------------------------------------TTTAA--------TTT----TATGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAT----------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CA-------AGGACTTG------CCTGTGTGCAGATTATCGGATATTTCAGATCATGAGGCCTCACTGGGTAAGT-GT---AAA-------GCACACAACA----TTTTTTTTATTAATCTAAGAATCGCTTTTAAATCAAATTTGATTAAACT-G-GTG-------A----------------CTTCCAATGG--GACTCCCAAAATAAAAAA-AATAGTTTTTGCCTCGTATTTCCAAAT-TCCAATGTACCCAATGAGA-----------------------------------------------------A-TGTCGCAGCA--------------GTTAACTCTATTTTGA-TAT--GGGAGC---T------------AATGTTGCAGA--CAT-TT-------A-----TAGATAACAAACACATTTCTTGGAAA-TGG--------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:07 AM