ID:

dsi_17713

 Coordinate:

3l:7915795-7915944 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.2 -8.4 -8.3

Flybase annnotation

CDS [3l_7915945_7916105_+]; exon [3l_7915945_7916258_+]; intron [3l_7915639_7915944_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGTATTTGGGCTTTGCTTAATTTCGTTTATATCCCGAAATTGTATTAAAGCTGTAGCTTTCGTTTAATAACTTGGCTAAAAGCGATATTTTGTTTCCCATTCTTAAAATCGTCAAAAATCTAAACTAAAATTTTGCCGAAATTCCAAAAGAATCGCTATGGGATATTGTAGTTACACTTCTCCTCCAACAATATTGCAGAAGCTGGTTTGCAGCAGTCATTAACGCTAATGATGGACGCGATGCGAGAC
*********************************************************************************************..((((((((((....(((.(((((.............))))).)))........))))......)))))).....................***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M025
embryo
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M024
male body
............................................ATTAAGGCTGGAGGTTTCGT.......................................................................................................................................................................................... 20 3 4 5.75 23 21 0 0 0 0 2 0 0 0
.............................................TTAAGGCTGGAGGTTTCGT.......................................................................................................................................................................................... 19 3 10 5.10 51 51 0 0 0 0 0 0 0 0
...........................................TATTAAGGCTGGAGGTTTCGT.......................................................................................................................................................................................... 21 3 1 3.00 3 3 0 0 0 0 0 0 0 0
....................................................................................................................................................................TATTGTAGTTACACTTCTCCT................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TTATGATGGACGCGA........ 15 1 1 1.00 1 0 0 0 0 1 0 0 0 0
............TTTGCTTAATTTCGTTTGTA.......................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................TTTCCCATTCTTAAAATCGTCAAAAATC................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................TATTGTAGTTACACTTCTCCTCC............................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................TATTGTAGTTACACTTCTCCG................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................TTCCCATTCTTAAAATCGTCAAAAATC................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................................................................CATTCCTAAAATCGTCAAGA.................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 0 1 0 0
.........................................................CTTTCGTTGGATCACTTGGC............................................................................................................................................................................. 20 3 11 0.27 3 0 0 0 0 0 0 0 0 3
...............GCTTAATTTCTTTTATAT......................................................................................................................................................................................................................... 18 1 5 0.20 1 0 0 1 0 0 0 0 0 0
............................................GTTTACGCTGTAGCTTTCGTT......................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................TATCACAGAAGCTGGTTT........................................ 18 2 8 0.13 1 0 0 0 0 0 0 0 1 0
................................................AAGCTGTAGATTTCGTA......................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AACATAAACCCGAAACGAATTAAAGCAAATATAGGGCTTTAACATAATTTCGACATCGAAAGCAAATTATTGAACCGATTTTCGCTATAAAACAAAGGGTAAGAATTTTAGCAGTTTTTAGATTTGATTTTAAAACGGCTTTAAGGTTTTCTTAGCGATACCCTATAACATCAATGTGAAGAGGAGGTTGTTATAACGTCTTCGACCAAACGTCGTCAGTAATTGCGATTACTACCTGCGCTACGCTCTG
*****************************************************************..((((((((((....(((.(((((.............))))).)))........))))......)))))).....................********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 M053
female body
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...............................................................................................................................................................................GTGGAGAGGAGGTTGTTATAA...................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................CCAAACGTCGTCAGTAATTGC........................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................TACCTGCGCTACGCTCTG 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................GCAGTTTTTAGATTTGATTT........................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...............................................................................................AGGGTAAGAATTTTAGCAGTT...................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................CTACCTGCGCTACGCTCT. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................CGGCTTTGAGGTTTTCTTA................................................................................................ 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................TTTCGCTGTAAACCAAAGGTTAA.................................................................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 1 0 0
................................................................................TTCGCTGTAAACCAAAGGTTAA.................................................................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 1 0 0
....................................................................................................AAGGATTTTAGCAGTT...................................................................................................................................... 16 1 9 0.11 1 0 1 0 0 0 0 0 0 0
.................................GGGCTTTAACACAATT......................................................................................................................................................................................................... 16 1 11 0.09 1 0 0 0 0 0 0 0 1 0
............................................................................................................................................................GATAACCTAGAACATCA............................................................................. 17 2 13 0.08 1 0 0 0 0 0 0 1 0 0
...................................................................................................TCAGGATCTTAGCAGTTTT.................................................................................................................................... 19 3 16 0.06 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................TAGGGATACCCTATGA.................................................................................. 16 2 17 0.06 1 0 0 0 0 0 0 0 0 1
...............................................................................................AGGGGGAGAAGTTTAGCAG........................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:32 AM