ID:

dsi_17656

Coordinate:

2r:5531619-5531768 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-28.9	-28.9	-28.9

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
(TTA)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

CAACGCGTCGCTGGTTGCCTGGTTCTTTGTGCATCAGCGCCGCAAGAAAGGTTATTATTATTATTTATTATTATTATTATTGTGACTATTATTTGGGCAGTATATGCACTGCACTGGTTTATTTGCTGTGGCTGCTAGTTGGGGTCCGTCTTTGATTGAGGTTACTTCTGAGCGGGGCTGGGGCGTACTCCGAAATCCACTCCGAGAGCCACTAGACAATTGCACTGCCATGTTGCAGCGGCAGCCGGCA ************************************************........................................((((.((.(((((..((.((((.((.(((((......((((((..(((((((((.....))))))))).))))))...))))).)))).)).))))))))).))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553485 Chicharo_3 day-old ovaries
.......................................................................................................................................................................CTGAGCGGGGCTGGG....................................................................	15	0	1	2.00	2	2	0	0	0	0
...........................................................................................................................................................TTGAGGTTACTTCTGAGCGGGGCTGGC....................................................................	27	1	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................GCGGGGGTGGGGCGGAC..............................................................	17	2	20	0.65	13	13	0	0	0	0
........................CTTTGTGCATCCGCGCAGC...............................................................................................................................................................................................................	19	2	3	0.33	1	0	1	0	0	0
...........................................................................................................................................................................GCGGGGGTGGGGCGGACT.............................................................	18	2	11	0.27	3	2	0	1	0	0
............................................................................................................................................................................CGGGGGTGGGGCGGACT.............................................................	17	2	16	0.25	4	2	0	2	0	0
......................................................................................TATTTTTTGGGAAGGATATGCA..............................................................................................................................................	22	3	5	0.20	1	1	0	0	0	0
..............................................................................................................................TGGGGCTGCTAGCTGGGG..........................................................................................................	18	2	7	0.14	1	1	0	0	0	0
...........................................................................ATTATTGTGACCATTAGT.............................................................................................................................................................	18	2	8	0.13	1	0	0	0	1	0
..............................................................................................................................................................................................................................GACTACCATGTTGCAACGG.........	19	3	13	0.08	1	0	0	0	0	1
...........................................................................................TTTGGGTAGTATATGCT..............................................................................................................................................	17	2	20	0.05	1	1	0	0	0	0

Anti-sense strand reads

GTTGCGCAGCGACCAACGGACCAAGAAACACGTAGTCGCGGCGTTCTTTCCAATAATAATAATAAATAATAATAATAATAACACTGATAATAAACCCGTCATATACGTGACGTGACCAAATAAACGACACCGACGATCAACCCCAGGCAGAAACTAACTCCAATGAAGACTCGCCCCGACCCCGCATGAGGCTTTAGGTGAGGCTCTCGGTGATCTGTTAACGTGACGGTACAACGTCGCCGTCGGCCGT ************************************************........................................((((.((.(((((..((.((((.((.(((((......((((((..(((((((((.....))))))))).))))))...))))).)))).)).))))))))).))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
..............................................................................................................................................................TCCAATGAAGACTCGACATG........................................................................	20	3	2	0.50	1	1	0	0
.........................................................................................................................................................................................ATGACGCTTTAGGTGAG................................................	17	1	3	0.33	1	0	1	0
........................................................................................................................................................................................................................GTTAACATGATGGTACAA................	18	2	5	0.20	1	1	0	0
................................................................................ACGCTGATGATAAACCCG........................................................................................................................................................	18	2	8	0.13	1	0	1	0
...GCGCAGTGACCAGCGGA......................................................................................................................................................................................................................................	17	2	12	0.08	1	0	1	0
.........................................................................................................................................................................................................GGCACGCGGTGATCTG.................................	16	2	20	0.05	1	0	0	1

Generated: 04/23/2015 at 04:16 PM