ID:

dsi_17595

 Coordinate:

3l:22344643-22344792 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.2 -13.2 -13.2

Flybase annnotation

Antisense to three_prime_UTR [3l_22344583_22344928_+]; Antisense to exon [3l_22344286_22344928_+]

No Repeatable elements found

Sense Strand Reads

TTTAAGTCAACCGCCAAATCGCTAGACGGTTTTCAACACTACCAACGCCCGTAAGTCAAATACATTTAGTCTCCAAATCCCAAATTCCCAAGAACTGCACTTGGACGGCAGGGTGTTGTTCGTGTCATGGAAGATTCACTTTATGTAAAACATGATTTTTGGATGGACGAACTGCGATTTAATTGTACTATTAAAGCTATGTGTCTTTACAACGATTGAATTGCATTGCCCACGACTATCAACTACATTT
*******************************************************************************.....((((((.((((.((((((........)))))).)))).))....)))).........************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
........................................................................................................................CGTGTCATGGAAGATTCACTT............................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................CCAAATTCCCAAGAACTG......................................................................................................................................................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.........................................................................................AAGAACTGCACTTGGACGGCA............................................................................................................................................ 21 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................TTTGGATGGACGAACTGCGATT....................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GAATTGCATTGCCCACGACTA............ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................CAAGAACTGCACTTGGACGGC............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................TGTTCGTGTCATGGAGGAT................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1
....................................................................................................TTGGACGGCAGGGTGT...................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTTTACAACGATTGAATTGCA......................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................TGTTGTTCGTGTCATGGAAGA.................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................TACAACGATTGAATTGCATTGCAAA.................. 25 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................ATGGACGAACTGCGATTTAAT................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTTTGGATGGACGAACTGCGA......................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................TGGATGGACGAACTGCGATTT...................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................CCAAATTCCCAAGAACGG......................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................TGTAAAACATGATTTTTGGAT...................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................TACAACGATTGAATTGCATTGC..................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GATTTTTGGATGGACGAACT............................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................AACATGATTTTTGGATGGACG................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATTTTTGGATGGACGAACTGC........................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................ACATGATTTTTGGATGGACG................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................AGGGTGTTGTTCGTGTCATGG........................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................TGATTTTTGGATGGATGAACT............................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ACAACGATTGAATTGCATT....................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TTACAACGATTGAATTGCATT....................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................TTGTTCGTGTCATGGAAGATT.................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................ACTTGGACGGCAGGGTG....................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................CAGGCTGTTGTTCGTGT............................................................................................................................. 17 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GTCTTGACAACGCTTGA............................... 17 2 12 0.17 2 0 0 0 0 0 2 0 0 0 0
.......................................................................................................................................................................................................................................ACGACGATCAACTACAGTC 19 3 14 0.07 1 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

##########################################################################################################################################################################################################################################################
AAATTCAGTTGGCGGTTTAGCGATCTGCCAAAAGTTGTGATGGTTGCGGGCATTCAGTTTATGTAAATCAGAGGTTTAGGGTTTAAGGGTTCTTGACGTGAACCTGCCGTCCCACAACAAGCACAGTACCTTCTAAGTGAAATACATTTTGTACTAAAAACCTACCTGCTTGACGCTAAATTAACATGATAATTTCGATACACAGAAATGTTGCTAACTTAACGTAACGGGTGCTGATAGTTGATGTAAA
*************************************************************************************************************.....((((((.((((.((((((........)))))).)))).))....)))).........******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M023
head
 GSM343915
embryo
.........................................................................................................................................................................................................ACAGAAATGTTGCTAACTTAA............................ 21 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................ACGTAACGGGTGCTGATAGTT........ 21 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0
...................................................................................................................................................................ACCTGCTTGACGCTAAATTAACATG.............................................................. 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
...................................................................................................................................................................ACCTGCTTGACGCTAAATTAA.................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................AACCTACCTGCTTGACGCTAAATTAACAT............................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAAAAAACCTACCTGCTTGACGCTAAAT..................................................................... 28 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................TATGTAAATCAGAGGTTTAGGG......................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................AACCTACCTGCTTGACGCTAAAT..................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AGTGAAATACATTTTGTACTA.............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGTTGCTAACTTAACGTAA....................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................ACCTACCTGCTTGACGCTAAA...................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................TAACGGGTGCTGATAGTTGAT..... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGTAACGGGGGCTGATAGT......... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................TTAACGGGTGCTGATAGTTGAT..... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TAACTTAACGTAACGGGTGCTG.............. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................ACCTGCTTGACGCTAAATTAACATGATAA.......................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CTACCTTCTTGACGCTAA....................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ACAGAAATGTTGCTAACTTAAC........................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGGGTGTTGATAGTTGATGTA.. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ACGTAACGGGTGCTGATA........... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................AGAAATGTTGCTAACTTAA............................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGGGTGCTGATAGTTGATGTA.. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTAACGGGTGCTGATAGTTG....... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................CCTGCTTGACGCTAAATTAACATGA............................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ACGTAACGGGTGCTGATAG.......... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................AACGTAACGGGTGCTGATAGTT........ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTGACGGGTGCTGATAGTTGAT..... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..............................................................GTAAATCAGAGGTTTAG........................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............................................................................AGGGTTTAAGGCTTCT............................................................................................................................................................. 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................AAACCTACCTGCTTG.............................................................................. 15 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
............................................................................TCAGGTTTAAGAGTTCTTGA.......................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTGACTGGTGCTGATATTTG....... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0
..............................AAAGTTGTAATGGTTG............................................................................................................................................................................................................ 16 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0
..................................................................ATCAGAGGTCTAGGGTTAA..................................................................................................................................................................... 19 2 17 0.06 1 0 0 0 0 0 1 0 0 0 0
................TTAGCGATGTGCTAAAGGT....................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.................................GTTGTGGTGGTTGCG.......................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:22344593-22344842 - dsi_17595 TTTAAGTCAACCGCCAAATCGCTAGACGGTTTTCAACACTACCA---ACGCCCGTAAGTCAAATACATTTAG-TCTCCAAATCCCAAATT--------------------------------CCCAAGAACTGCAC-TTGGACGGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCGTGTCATGGAAGATTCACTTTATGTAAAACATGATTTTTGGATGGACGAACTGCGATTTA---ATTGTACTATTAAAGCTATGTG-------------------TCTTTACAACG--ATTGAATTGCATTGCCCAC-GACT--------------------ATCAACTACAT-TT
droSec2 scaffold_11:2759039-2759288 - TTTAAGTCAACCGCCAAATCGCTAGACGGTTTTCAACACTACCA---ACGCCCGTAAGTCAAATACATTTAG-TCTCCAAATCCCAAATT--------------------------------CCCAAGAACTGAAC-TTGGACGGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCGTGTCATGGAAGATTCACTTTATGTAAAACATGATTTTTGGATGGACGAACTGCGATTTA---ATTGTACTATTAAAGCTATGTG-------------------TCTTTACAACG--ATTGAATTGCATTGCCCAC-GACT--------------------ATCAACTACAT-TT
dm3 chr3L:22857270-22857522 - TTTTAATCAACCGCCAAAGCGCTAGACGGTTTTCAACACTACCACCAACGACCGTAATTCGGATACATTTTG-TCCCCAAATCTCAAATT--------------------------------CCCAGGAACTGCAC-TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCGTGTCATGGAAAATCCACTTTATGTAAAACATGCTTTTTGGATGGACGAACTGTGATTTA---ATTGTACTATTAAGGCTATATG-------------------TCTTTACAACG--ATTCAATTGCACTGACCAC-GACT--------------------ATAAACTACAT-TT
droEre2 scaffold_4784:22499974-22500221 - TTTGATTTAGCCGCCAAAGCTGCAGGCGGTTTTCAACACTGCCA---ACGCCCGCAGGTCGAATACAGTTAG-TCCCCAATTCCCAAATT--------------------------------CCCAAGAACTGCAG-TTG-TCAGC-----------------------------------------------------------------------A-----------------GAGTGTTGTTCGTGTCATGGAAGATTCCCCT--AATAAAGTAGACTCTTTGGATGGACGAACTCTGATTTT---ATTGTACTATAAAAGCTATGTG-------------------CCCTTACAACG--ATTCAATTGCACTGCCCGC-GACT--------------------ATGAAATACATCTT
droYak3 3L:23332126-23332364 - TT-GATTTAACCGCCAAAGCGCTAGACGGTTTTCAACACTGCCA---ACGCACGCAGGTCAAATACATTTGG-CCCCCAA--------TT--------------------------------CCCATGAACTGCAC-TTG-TCAGC-----------------------------------------------------------------------A-----------------GAGAGTTGTTCGTGTCATGGAAGATACAATGTA-ATAAAAGAGACTCTGTGGATGGACGAACTGCGATTTA---ATCTTACTAATAAAGCTATATG-------------------TCTTTACAAGG--ATTTAATTGCACTGCCCGC-GACT--------------------ATGAACTACAA-TT
droEug1 scf7180000409801:440605-440815 - TTTGATTTAACCGCCAAA-CATTGAAAACTTTCCAACACTGCCA---GAATTTGCTCGTC-AATATAGTGAA-GCACCAACT----AATTTTATTCGAAACCACTAAAAATAGGTATCGGTTCCCAAAAAACATAC-ATAAACTTC-----------------------------------------------------------------------------------------------------------------TCCCTTTCAAATGAAA-------------------------------------------------CAACATTGATGTGTTAATATT--------------GA--ATCGGATTGTAGTATTCATTGATT--------------------CTAAACTAAAA-CT
droBia1 scf7180000302377:348502-348775 + TTTGAGTTGGCCGCCACAACCTTGGACGCTTTCCAGCACTGCCA---GC--CTGCGGGTCGGCTACAGTCAGGCCTCCGAAACTCTAACGTTCTGCTGACTCGCAAAATATC--GA----------------GCGTTCTG-----------------------------------------------------------------------------GGAGGTACGAACTAGGAATACACCAGTTTGCTTCAGGGAAGCTTGACTGCAATAAAAGGAAACAGCTTATTTGGACGAACTGCGATTT----ATGGTACTGCTAAAGCTACGCG-------------------TGCTAACATCA--AATCAATTGCACTTTCCCG-CCGC--------------------ACCAGCGACAA-CT
droTak1 scf7180000415879:87639-87772 + GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGCTAAGGGAGTTTGACTGTAAATAAAAGAATCTCATTTAATGGACGAATAGCGATTTA---ATGGTACTTCTAAAGCTATGTG-------------------TGTTAACAACG--AATCAATTGCACTTTCCGCGGACC--------------------CTTAACTAGAA-CT
droEle1 scf7180000490635:7530-7841 - TTTAAGTTTGCCGCCATCGCTTTTGTTGTTTTCCAACACTGCCA---GCATCTGA-GACCAAATACAGTAAA-ACTCAAAGAATCAAACT--------------------------------TCCCCAACATTCAT-TTT-TCA-------GACACTAACCT-TCCTTAAAAGGCTAACGCTGTTTCTACATATATACAAACTGT-TATGTTTTGTCG-----------------GTTGGTGGTTCATGTTATCGCACTTCGAAGGCAAATCAAAAA-ACAGCTTTGACGGACGAATTGAGATTTA---ATTTTACTCTTAAAAC-ATGTG-------------------TGTAAAAAACG--AATCTATTGCACTCTTCATTAA-----------------AGGTTATGACTTAGAC-TA
droRho1 scf7180000779806:35508-35832 + TTTGATTTGACCGCCATCGCATCAGATGTTTTCCAACACTACCA---GTATCTGT-GGCCAAATACAGTAAA-ACCCCAAAACTGTAATTTTCTAC-GACTTACAAAAT-TC--TT----------------GTTTTTTG-TCTGCAAAAAGACATGAAATTATTCTAAGGTTGCTAAAGCTTATTCTG----TATACAAATTATATTTATTTTATAA-----------------ATGTGTTGGTGGTGTTATTGTAGTTCCAAAGTAAATAAAAAA-CCAGCTATGATGGACGAATTGCGATTTA---ATGTTACTGTTAAGGCTATGTG-------------------TGTTCAAGACG--AACCCATTGCACTCTCCAC-GGCT--------------------ATG-GCTACA--TA
droFic1 scf7180000453830:157936-158084 + GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGATCTTAGCAAGGTTCCACTGTAAATAAAAGATACATTTTTGCCGAACGAATGGCGATTTA---ATGTTACTTTTAAAGCTATCTC-------------------TGTAAACAAGTTTAATCT-TTGCAG--------GGCTTTCACTTTAACTTAGAGCTATAAATGTATGT-TT
droKik1 scf7180000302695:164099-164199 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACGAAATACAATTTATTTATTTTACAATTAAAGCTAGATGCA----------------CTGTTAACGACA--ATTACATTGCACTCTCCAC-AAAT-------------ATAGCTCCTAATCTAGAA-CT
droAna3 scaffold_13337:22589815-22589863 - TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATCG--ATAGAATTGCACTTCCTTTGGACG-----------------ATCCAGTATAAGAT-TT
droBip1 scf7180000396426:233440-233538 + CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATACCATTTA---ATTTTAAAATGACAGCTATATACATATATATATGTTGAAACTGTTAATAGAA--TTGGGATTGCACTTCCTTTGGAC------------------------AGATCCAG-TC
dp5 XR_group6:3029901-3029907 + TGCAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_9:1322732-1322739 + CTGCAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004768:910726-910748 + GC-------------------------ATTGTCCAACACTGGCA---ACGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:12935135-12935144 - AGTTATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTAAGTCAACCGCCAAATCGCTAGACGGTTTTCAACACTACCA---ACGCCCGTAAGTCAAATACATTTAG-TCTCCAAATCCCAAATT--------------------------------CCCAAGAACTGCAC-TTGGACGGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCGTGTCATGGAAGATTCACTTTATGTAAAACATGATTTTTGGATGGACGAACTGCGATTTA---ATTGTACTATTAAAGCTATGTG-------------------TCTTTACAACG--ATTGAATTGCATTGCCCAC-GACT--------------------ATCAACTACAT-TTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................CGTGTCATGGAAGATTCACTT...........................................................................................................................................................2112.00200000000002000000
...................................................................................CCAAATT--------------------------------CCCAAGAACTG................................................................................................................................................................................................................................................................................................1812.00220000000000000000
.............................................................................................................................AAGAACTGCAC-TTGGACGGC-----------------------------------------------------------------------A-----------------..........................................................................................................................................................................................2112.00201000000000001000
..........................................................................................................................................................................................................................................................................................TTTGGATGGACGAACTGCGATT.....................................................................................................................2212.00202000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................GAATTGCATTGCCCAC-GACT--------------------A.............2111.00110000000000000000
............................................................................................................................CAAGAACTGCAC-TTGGACGGC-----------------------------------------------------------------------............................................................................................................................................................................................................2111.00100000001000000000
.........................................................................................................................................TTGGACGGC-----------------------------------------------------------------------A-----------------GGGTGT....................................................................................................................................................................................1611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................CTTTACAACG--ATTGAATTGCA...............................................2111.00100010000000000000
..............................................................................................................................................................................................................................................TGTTGTTCGTGTCATGGAAGA..................................................................................................................................................................2111.00100000000010000000
...............................................................................................................................................................................................................................................................................................ATGGACGAACTGCGATTTA---AT..............................................................................................................2111.00100000000001000000
.........................................................................................................................................................................................................................................................................................TTTTGGATGGACGAACTGCGA.......................................................................................................................2111.00100000010000000000
............................................................................................................................................................................................................................................................................................TGGATGGACGAACTGCGATTT....................................................................................................................2111.00100000010000000000
............................................................................................................................................................................................................................................................................TGTAAAACATGATTTTTGGAT....................................................................................................................................2111.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................TACAACG--ATTGAATTGCATTGC...........................................2211.00100000000001000000
......................................................................................................................................................................................................................................................................................GATTTTTGGATGGACGAACT...........................................................................................................................2011.00101000000000000000
.................................................................................................................................................................................................................................................................................AACATGATTTTTGGATGGACG...............................................................................................................................2111.00101000000000000000
.......................................................................................................................................................................................................................................................................................ATTTTTGGATGGACGAACTGC.........................................................................................................................2111.00100000001000000000
..................................................................................................................................................................................................................................................................................ACATGATTTTTGGATGGACG...............................................................................................................................2011.00101000000000000000
.........................................................................................................................................................................................................................A-----------------GGGTGTTGTTCGTGTCATGG......................................................................................................................................................................2111.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................ACAACG--ATTGAATTGCATT.............................................1911.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................TTACAACG--ATTGAATTGCATT.............................................2111.00100000000010000000
................................................................................................................................................................................................................................................TTGTTCGTGTCATGGAAGATT................................................................................................................................................................2111.00100000000100000000
......................................................................................................................................AC-TTGGACGGC-----------------------------------------------------------------------A-----------------GGGTG.....................................................................................................................................................................................1711.00100000000001000000
droSec2
TTTAAGTCAACCGCCAAATCGCTAGACGGTTTTCAACACTACCA---ACGCCCGTAAGTCAAATACATTTAG-TCTCCAAATCCCAAATT--------------------------------CCCAAGAACTGAAC-TTGGACGGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCGTGTCATGGAAGATTCACTTTATGTAAAACATGATTTTTGGATGGACGAACTGCGATTTA---ATTGTACTATTAAAGCTATGTG-------------------TCTTTACAACG--ATTGAATTGCATTGCCCAC-GACT--------------------ATCAACTACAT-TTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................TACAACG--ATTGAATTGCATTGC...........................................2212.0020101
................................................................................................................................................GC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCGTGTCAT........................................................................................................................................................................2111.0011000
..................................................................................................................................................................................................................................................................................................................................................................TACAACG--ATTGAATTGCATTG............................................2111.0010001
.......................................................................................................................................C-TTGGACGGC-----------------------------------------------------------------------A-----------------GGGTGTTGTT................................................................................................................................................................................2111.0010100
..........................................................................................................................................................................................................................................................................TATGTAAAACATGATTTTTGGA.....................................................................................................................................2211.0011000
............................................................................................................................................................................................................................................................TGGAAGATTCACTTTATGTAAA...................................................................................................................................................2211.0011000
.....................................................................................................................................AAC-TTGGACGGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCGTG............................................................................................................................................................................2711.0010100
...........................................................................................................................................................................................................................................................................................TTGGATGGACGAACTGCGATT.....................................................................................................................2111.0010001
..............................................................................................................................................................................................................................................TGTTGTTCGTGTCATGGAAGA..................................................................................................................................................................2111.0011000
...............................................................................................................................GAACTGAAC-TTGGACGGC-----------------------------------------------------------------------A-----------------GG........................................................................................................................................................................................2111.0011000
.....................................................................................................................................................................................................................................................CGTGTCATGGAAGATTCACTT...........................................................................................................................................................2111.0010100
....................................................................................................................................................................................................................................................TCGTGTCATGGAAGATTCACT............................................................................................................................................................2111.0010001
....................................................................................................................................................................................................................................................................................................................................CTATGTG-------------------TCTTTACAACG--ATT.......................................................2111.0011000
.....................................................................................................................................AAC-TTGGACGGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCG..............................................................................................................................................................................2511.0011000
dm3
TTTTAATCAACCGCCAAAGCGCTAGACGGTTTTCAACACTACCACCAACGACCGTAATTCGGATACATTTTG-TCCCCAAATCTCAAATT--------------------------------CCCAGGAACTGCAC-TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCGTGTCATGGAAAATCCACTTTATGTAAAACATGCTTTTTGGATGGACGAACTGTGATTTA---ATTGTACTATTAAGGCTATATG-------------------TCTTTACAACG--ATTCAATTGCACTGACCAC-GACT--------------------ATAAACTACAT-TTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................AC-TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGTTG..................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000100000000010000000
...............................................................................................................................................AGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCGTG............................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................ATTCAATTGCACTGACCAC-GA....................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGCTTTTTGGATGGACGAACT...........................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................AC-TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGT....................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
.....................................................................TTG-TCCCCAAATCTCAAATT--------------------------------...........................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TTGTACTATTAAGGCTATATG-------------------.......................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TGGATGGACGAACTGTGATTT....................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TTGTTCGTGTCATGGAAAATCCACTT...........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AC-TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGTT...................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................................................................................................................................................A---ATTGTACTATTAAGGCTATA............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TTTTG-TCCCCAAATCTCAAATT--------------------------------...........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................ATGCTTTTTGGATGGACGAACTG..........................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TTTATGTAAAACATGCTTTTTGGA.....................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................GC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCGTGT...........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TCAAATT--------------------------------CCCAGGAACTGCAC-T...........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.TTTAATCAACCGCCAAAGCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GTAATTCGGATACATTTTG-TCCCCAAATC..................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................T--------------------------------CCCAGGAACTGCAC-TTGAA.......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AACG--ATTCAATTGCACTGACC.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTTTTGGATGGACGAACTG..........................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................AC-TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCG..............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGGAACTGCAC-TTGAACAG....................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................ATTCGGATACATTTTG-TCCCC.......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................CCCCAAATCTCAAATT--------------------------------CCCAGGA....................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................ATTAAGGCTATATG-------------------TCTTTA.................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTC...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................ATGCTTTTTGGATGGACGAAC............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................GGTGTTGTTCGTGTCATGGAA....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................................................................................................GTGTTGTTCGTGTCATGGAAAA..................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................TTTTGGATGGACGAACTG..........................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TTCAACACTACCACCAACGACCG...............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CAACG--ATTCAATTGCACTGACC.........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AC-TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGTATC.................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CGTGTCATGGAAAATCCACT............................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................................TGCAC-TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGC....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................TCAAATT--------------------------------CCCAGGAACTGCAC-............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................AAATT--------------------------------CCCAGGAACTGCAC-TTGAACAG....................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GCAC-TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGT....................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TACAACG--ATTCAATTGCACTGA...........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................GGGTGTTGTTCGTGTCATGG......................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TTTA---ATTGTACTATTAAGGCTATATG-------------------.......................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCG..............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
....................................................................................................................................GCAC-TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGTT...................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGCAC-TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGT....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CATGCTTTTTGGATGGACGAAC............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CG--ATTCAATTGCACTGACCAC-......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................GGGTGTTGTTCGTGTCATGGAA....................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
........................................................................................................................................................................................................................................................................................TTTTTGGATGGACGAACTGTG........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCTTTTTGGATGGACGAA.............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................GTGTTGTTCGTGTCATGGAA....................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................CTTTACAACG--ATTCAATTGCA...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................CAC-TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGTTG..................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................CTATATG-------------------TCTTTACAACG--AT........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................GTTGTTCGTGTCATGGAAA...................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TG-------------------TCTTTACAACG--ATTCAATTG.................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................GAACAGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTCGTGTCATGGAA....................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TTTGGATGGACGAACTGTGAT......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................CCAGGAACTGCAC-TTGAACAG....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................TGCAC-TTGAACAGC-----------------------------------------------------------------------A-----------------GGGTGTTGTTC...............................................................................................................................................................................2611.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGCTTTTTGGATGGACGAAC............................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
droEre2
TTTGATTTAGCCGCCAAAGCTGCAGGCGGTTTTCAACACTGCCA---ACGCCCGCAGGTCGAATACAGTTAG-TCCCCAATTCCCAAATT--------------------------------CCCAAGAACTGCAG-TTG-TCAGC-----------------------------------------------------------------------A-----------------GAGTGTTGTTCGTGTCATGGAAGATTCCCCT--AATAAAGTAGACTCTTTGGATGGACGAACTCTGATTTT---ATTGTACTATAAAAGCTATGTG-------------------CCCTTACAACG--ATTCAATTGCACTGCCCGC-GACT--------------------ATGAAATACATCTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................ACTCTGATTTT---ATTGTACTAT......................................................................................................2111.0011000000
droYak3
TT-GATTTAACCGCCAAAGCGCTAGACGGTTTTCAACACTGCCA---ACGCACGCAGGTCAAATACATTTGG-CCCCCAA--------TT--------------------------------CCCATGAACTGCAC-TTG-TCAGC-----------------------------------------------------------------------A-----------------GAGAGTTGTTCGTGTCATGGAAGATACAATGTA-ATAAAAGAGACTCTGTGGATGGACGAACTGCGATTTA---ATCTTACTAATAAAGCTATATG-------------------TCTTTACAAGG--ATTTAATTGCACTGCCCGC-GACT--------------------ATGAACTACAA-TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................A-----------------GAGAGTTGTTCGTGTCATGG......................................................................................................................................................................2112.00201100000000
...........................................................................................................................................G-TCAGC-----------------------------------------------------------------------A-----------------GAGAGTTGTTCGTG............................................................................................................................................................................2111.00100010000000
......................................................................................................................................AC-TTG-TCAGC-----------------------------------------------------------------------A-----------------GAGAGTTGTT................................................................................................................................................................................2111.00100000100000
droEug1
TTTGATTTAACCGCCAAA-CATTGAAAACTTTCCAACACTGCCA---GAATTTGCTCGTC-AATATAGTGAA-GCACCAACT----AATTTTATTCGAAACCACTAAAAATAGGTATCGGTTCCCAAAAAACATAC-ATAAACTTC-----------------------------------------------------------------------------------------------------------------TCCCTTTCAAATGAAA-------------------------------------------------CAACATTGATGTGTTAATATT--------------GA--ATCGGATTGTAGTATTCATTGATT--------------------CTAAACTAAAA-CTSizeHit CountTotal NormTotal
No Reads
droBia1
TTTGAGTTGGCCGCCACAACCTTGGACGCTTTCCAGCACTGCCA---GC--CTGCGGGTCGGCTACAGTCAGGCCTCCGAAACTCTAACGTTCTGCTGACTCGCAAAATATC--GA----------------GCGTTCTG-----------------------------------------------------------------------------GGAGGTACGAACTAGGAATACACCAGTTTGCTTCAGGGAAGCTTGACTGCAATAAAAGGAAACAGCTTATTTGGACGAACTGCGATTT----ATGGTACTGCTAAAGCTACGCG-------------------TGCTAACATCA--AATCAATTGCACTTTCCCG-CCGC--------------------ACCAGCGACAA-CTSizeHit CountTotal NormTotal
No Reads
droTak1
GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGCTAAGGGAGTTTGACTGTAAATAAAAGAATCTCATTTAATGGACGAATAGCGATTTA---ATGGTACTTCTAAAGCTATGTG-------------------TGTTAACAACG--AATCAATTGCACTTTCCGCGGACC--------------------CTTAACTAGAA-CTSizeHit CountTotal NormTotal
No Reads
droEle1
TTTAAGTTTGCCGCCATCGCTTTTGTTGTTTTCCAACACTGCCA---GCATCTGA-GACCAAATACAGTAAA-ACTCAAAGAATCAAACT--------------------------------TCCCCAACATTCAT-TTT-TCA-------GACACTAACCT-TCCTTAAAAGGCTAACGCTGTTTCTACATATATACAAACTGT-TATGTTTTGTCG-----------------GTTGGTGGTTCATGTTATCGCACTTCGAAGGCAAATCAAAAA-ACAGCTTTGACGGACGAATTGAGATTTA---ATTTTACTCTTAAAAC-ATGTG-------------------TGTAAAAAACG--AATCTATTGCACTCTTCATTAA-----------------AGGTTATGACTTAGAC-TASizeHit CountTotal NormTotal
No Reads
droRho1
TTTGATTTGACCGCCATCGCATCAGATGTTTTCCAACACTACCA---GTATCTGT-GGCCAAATACAGTAAA-ACCCCAAAACTGTAATTTTCTAC-GACTTACAAAAT-TC--TT----------------GTTTTTTG-TCTGCAAAAAGACATGAAATTATTCTAAGGTTGCTAAAGCTTATTCTG----TATACAAATTATATTTATTTTATAA-----------------ATGTGTTGGTGGTGTTATTGTAGTTCCAAAGTAAATAAAAAA-CCAGCTATGATGGACGAATTGCGATTTA---ATGTTACTGTTAAGGCTATGTG-------------------TGTTCAAGACG--AACCCATTGCACTCTCCAC-GGCT--------------------ATG-GCTACA--TASizeHit CountTotal NormTotal
No Reads
droFic1
GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGATCTTAGCAAGGTTCCACTGTAAATAAAAGATACATTTTTGCCGAACGAATGGCGATTTA---ATGTTACTTTTAAAGCTATCTC-------------------TGTAAACAAGTTTAATCT-TTGCAG--------GGCTTTCACTTTAACTTAGAGCTATAAATGTATGT-TTSizeHit CountTotal NormTotal
No Reads
droKik1
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGACGAAATACAATTTATTTATTTTACAATTAAAGCTAGATGCA----------------CTGTTAACGACA--ATTACATTGCACTCTCCAC-AAAT-------------ATAGCTCCTAATCTAGAA-CTSizeHit CountTotal NormTotal
No Reads
droAna3
TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATCG--ATAGAATTGCACTTCCTTTGGACG-----------------ATCCAGTATAAGAT-TTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATCG--ATAGAATTGCACT.............................................2211.001000010
.................................................................................................................................................................................................................................................................................................................................................................................TTGCACTTCCTTTGGACG-----------------ATC..............2111.001100000
droBip1
CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATACCATTTA---ATTTTAAAATGACAGCTATATACATATATATATGTTGAAACTGTTAATAGAA--TTGGGATTGCACTTCCTTTGGAC------------------------AGATCCAG-TCSizeHit CountTotal NormTotal
No Reads
dp5
TGCAGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CTGCAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GC-------------------------ATTGTCCAACACTGGCA---ACGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droMoj3
AGTTATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/18/2015 at 06:11 PM