ID:

dsi_17585

 Coordinate:

3r:17444758-17444907 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_17444908_17445046_+]; exon [3r_17444908_17445046_+]; intron [3r_17444602_17444907_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGTCGGGGTGTCGGGAACACACGCATATCACACAGTACACAAAATCCCGCAGATTAAGGATAATAGCCCACCCCCCACCACCCGCTAAGGCCCAAAACAAAGGATCCCAAAAATCCAACTTGACAAGCCTTAAAGTGCACAAGCAAAAGGAGCATTATTTATACATGAATTTGAAGCATTCTTTCCCGCCTGTTTGCAGACTATCTGAGGCACAAGGACTGCTTTGCATACATCCAACTGGACTGGGTC
**************************************************........((........))................((((((..........((((.......))))..........))))))...((((((.((.((((((((.(((..............))).)).))))))...)).)))..))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
............................................................................................................................................................................................................................TGCTTTGCATACATCCAACTGGACTGGGT. 29 0 1 1.00 1 1 0 0 0 0
..............GGAATACACGCTTATCAGAC........................................................................................................................................................................................................................ 20 3 2 0.50 1 0 1 0 0 0
.............................................................................ATCACCCGCTAAGGTCCGA.......................................................................................................................................................... 19 3 5 0.20 1 0 0 1 0 0
...................................................................................................................................TAAAGAGCACTAGCAAAA..................................................................................................... 18 2 12 0.08 1 0 0 0 1 0
...............................................................................CACCCGCTAAGGTCCCGA......................................................................................................................................................... 18 3 16 0.06 1 0 0 1 0 0
................................................................................ACCCGCTAAGGTCCCGAA........................................................................................................................................................ 18 3 17 0.06 1 0 0 1 0 0
..................................................................................................................................................................TACAAGAATTTGAAG......................................................................... 15 1 20 0.05 1 0 0 0 0 1
...................................................................................................................................................................................TTCTTTCCCGGCTGTT....................................................... 16 1 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

GGCAGCCCCACAGCCCTTGTGTGCGTATAGTGTGTCATGTGTTTTAGGGCGTCTAATTCCTATTATCGGGTGGGGGGTGGTGGGCGATTCCGGGTTTTGTTTCCTAGGGTTTTTAGGTTGAACTGTTCGGAATTTCACGTGTTCGTTTTCCTCGTAATAAATATGTACTTAAACTTCGTAAGAAAGGGCGGACAAACGTCTGATAGACTCCGTGTTCCTGACGAAACGTATGTAGGTTGACCTGACCCAG
**************************************************........((........))................((((((..........((((.......))))..........))))))...((((((.((.((((((((.(((..............))).)).))))))...)).)))..))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR1275483
Male prepupae		 SRR1275487
Male larvae		 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..............................................................................................................................TCGGAATTTCACGTGTTC.......................................................................................................... 18 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTCGGAATTTCACGTGTTC.......................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CGGAATTTCACGTGTTCG......................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTCGGAATTTCACGTGTT........................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................GTGGGCGATGCCGGCTT.......................................................................................................................................................... 17 2 4 0.50 2 0 0 2 0 0 0 0 0 0 0 0
.................................................................................GGGCGATGCCGGGTT.......................................................................................................................................................... 15 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................TGGCGGGCGGGTCCGGGTTT......................................................................................................................................................... 20 3 9 0.22 2 0 0 0 0 0 1 1 0 0 0 0
................................................................................................................................GGAATCTCACGTGTT........................................................................................................... 15 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................CAAATGTAGGTTGATCTGA..... 19 3 20 0.20 4 0 0 0 0 0 0 0 2 2 0 0
...................................................................................................................................................................................AAGAAAGGGGCGACAAACG.................................................... 19 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GACTCCGTGTGTCTGTCGAA......................... 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................TGGGCGATGCCGGCTT.......................................................................................................................................................... 16 2 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................TTTTTAGGTGGAACT.............................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................TAGGTTGAATTTTTCGG........................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Generated: 04/23/2015 at 08:54 PM