dsi_17582

CDS [2l_18551923_18552033_-]; exon [2l_18551923_18552033_-]; intron [2l_18551410_18551922_-]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCAAACTTCTACAGCCTGTGAAACTGAGTGCTATACTCAAATTACCGCAGGTGGGTTTGTATGACTCATGACCGACTTTTTAATATTCTTAGACGGGGGTAGTGGCCCTCTTATCGATCAGTGCAGCCGAAAGTGATAAGCGATTATCTCTGTTTTTGATAGCTATTGATCCTTATTTTCTTTTCTAATTTCGTGCGAAACAAAAGAGGTTTATGATGTGACTCATTTGGCATTTCATTTTATTTTCGTG *****************************************************************.......................(((((((((((((.((....((((((.((.((...)).))...)))))))).)))))))))))))..*******************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	SRR553487 NRT_0-2 hours eggs	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	O001 Testis	GSM343915 embryo	SRR618934 dsim w501 ovaries
.....CTTCTACAGCCTGTGAAAC..................................................................................................................................................................................................................................	19	0	1	4.00	4	4	0	0	0	0	0	0	0	0
........CTACAGCCTGTGAAACTG................................................................................................................................................................................................................................	18	0	1	3.00	3	0	3	0	0	0	0	0	0	0
...........CAGACTGTGAAACTG................................................................................................................................................................................................................................	15	1	13	2.31	30	0	0	23	0	7	0	0	0	0
.................GTGAAACTGAGTGCTATAC......................................................................................................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0	0	0	0	0
...........CAGACTGTGAAACTGCG..............................................................................................................................................................................................................................	17	2	13	1.69	22	0	0	18	0	3	1	0	0	0
..........................................................................................................................................................................................AATCTCGTGTGGAACAAAAG............................................	20	3	13	1.62	21	0	0	5	0	12	4	0	0	0
.CAAACTTCTACAGCCTGTGAAACTG................................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0
........CTACAGCCTGTGAAACTGAGTGCT..........................................................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..AAACTTCTACAGCCTGTGAAACTGAGT.............................................................................................................................................................................................................................	27	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...AACTTCTACAGCCTGTGAAACTGAGT.............................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.............GCCTGTGAAACTGAGTGC...........................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	0	1	0	0
.............................GCTATACTCAAATTACCGCAG........................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...AACTTCTACAGCCTGTGAAACT.................................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	0	1	0
...................................................................ATGACCGACTTTTTAATATT...................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0
..........................................................................................................................................AGCGATTATCTCTGTTTTT.............................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.................GTGAAACTGAGTGCTATACT.....................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0
...AACTTCTACAGCCTGTGAAACTG................................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.CAAACTTCTACAGCCTGTGAAACT.................................................................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.....CTTCTACAGCCTGTGAAACTG................................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.........TTCAGACTGTGAAACTGCG..............................................................................................................................................................................................................................	19	3	20	0.90	18	0	0	9	0	8	1	0	0	0
.............................................................TGACTCAAGACCGACT.............................................................................................................................................................................	16	1	3	0.67	2	0	0	1	0	0	1	0	0	0
..................................................................................................................................................................................................................TGATGATGCGACTCATTTGGCT..................	22	3	2	0.50	1	0	0	1	0	0	0	0	0	0
.............................................................TGACTCAAGACCGACTAT...........................................................................................................................................................................	18	2	2	0.50	1	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................AATCTCGTGTGAAACAAAA.............................................	19	2	5	0.20	1	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................ACTGATCCTTATTTT.......................................................................	15	1	14	0.07	1	0	0	0	0	0	1	0	0	0
..............................................GCAGTTGGGTTTGTA.............................................................................................................................................................................................	15	1	19	0.05	1	0	0	0	0	0	0	0	0	1
.................................................................TCATGACCGTCTTATT.........................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	1	0	0	0	0
................................................................................................................ATCGATAAGTGCTGCGGAAA......................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1
...........................................................ATTGACTCAAGACCGACT.............................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	1	0	0	0

AGTTTGAAGATGTCGGACACTTTGACTCACGATATGAGTTTAATGGCGTCCACCCAAACATACTGAGTACTGGCTGAAAAATTATAAGAATCTGCCCCCATCACCGGGAGAATAGCTAGTCACGTCGGCTTTCACTATTCGCTAATAGAGACAAAAACTATCGATAACTAGGAATAAAAGAAAAGATTAAAGCACGCTTTGTTTTCTCCAAATACTACACTGAGTAAACCGTAAAGTAAAATAAAAGCAC *******************************************************************************************.......................(((((((((((((.((....((((((.((.((...)).))...)))))))).)))))))))))))..*****************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M024 male body	M025 embryo	O002 Head	SRR902009 testis	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
........................................................................................................................................................................TAGGAATAAAATAAAAGATTAGT...........................................................	23	3	2	2.50	5	5	0	0	0	0	0	0	0
.............................................................................................GCCCCCATCACCGGGAGA...........................................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0
...TTGAAGATGTCGGACACTTTG..................................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
.....................................................................CCGGCTGAAAAATTATAA...................................................................................................................................................................	18	1	1	1.00	1	0	0	1	0	0	0	0	0
.....................................................................................................CACAGGGAGAATAGGTAGT..................................................................................................................................	19	2	2	0.50	1	0	0	0	0	1	0	0	0
.........................................................................................................GGGGGAATAACTAGTCACGTCAG..........................................................................................................................	23	3	2	0.50	1	0	0	0	0	0	1	0	0
..............................................................................................................................GGCTTTCACTATTGG.............................................................................................................	15	1	9	0.22	2	1	0	0	0	0	0	1	0
AGTTTGAAGGTGTCG...........................................................................................................................................................................................................................................	15	1	18	0.11	2	0	0	0	0	0	0	2	0
........................................................................................................................................AGTCGCTAATAGAGA...................................................................................................	15	1	12	0.08	1	0	0	0	0	0	0	1	0
............................................................................................................................TTGGCTTTCACTATT...............................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	1	0
.............................................................................................................................................CTAATAGAGAGAAAA..............................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:18551723-18551972 -	dsi_17582	TC-A-----AACTTCTACAGCCTGTG---AAACTGAGTGCTATACTCAAATTACCGCAGGTGGGTT----------------TGTATGACTCAT--GACCGACTTTTTAATATTCTTAGACGGGGGTA-------------GTG-----------------G-CCCTCTTATCGATCAG-------TGCAGCCGAAAGTGATAAGCGATTATCTC-----TGTTTTTGATAGCTATT----G------------ATCCTTATTTTC--------TT--------------------TTCTAATTTCGTGCGAAACAAAAGAGGTTTATGATG---TGACTCATTTGG-CA---TTTCA-----------TTT-TATTTTCGTG-----------------------------------
droSec2	scaffold_7:2624690-2624942 -		TC-A-----AAATACTAGATCCTGTG---AAACTGAGTGCTATACTCAAATTACCGCAAGTGGGTT----------------TGTATGACTCAT--GACCGACTTTTTAATATTCTTAGACGGGGGTA-------------GTG-----------------G-CCCTCTTATCGATCAG-------TGCAGCCGAAAGTGATAAGCGATTATCTC-----TGTATTTGATAGCTATT----G------------ATCCTTATTTTC--------TT--------------------TTCTAATTTCGTGCGGAACGGAACAGGTTTATGATGTTGTGACTCATTTGG-CA---TTTCA-----------TTT-TATTTTCGTG-----------------------------------
dm3	chr2L:18995386-18995651 -		TC-A-----AACTTCTATAGAGTGTG---ATAATGAATGCTATACTCTTATTAACGCAGGTGGGTT----------------TGTATGACTCAT--GACCGACTATTTCATATTCTTAGACGGGGGTA-------------GTG-----------------G-CCCTCTTATCGATCAG-------TGCAACCAAAGGTGATAAGCGATTATCTCTTTT-TCTTTTTGATAGCTATT----G------------ATCCTTGTTTTC--------TT--------------------TTCTAATTTCGTGCGGATCGAAAAAGGTTTATGATGTTGTGACTCATTTGGCAGTTACTGCA---CTACCTGGCTTT----TTCGTG-----------------------------------
droEre2	scaffold_4845:5273995-5274245 +		TC-A-----GGAGACAACATCCTGCG---ATAATGAGTGCTATACCCTTATTAGCTCAGGTGAGTT----------------TGTATGACTCAT--GAGCGACTATTTAATATTCTTAGACAAGGGTA-------------GTG-----------------G-CCCTGTTATCGATCAG-------TGCAGGCAAAAGTGATAAGCGATTATCTCTGTT-AGCTATTGACAGCTAATCAAGGATCAATTTCTTGATCTCAA--------GGATCTT--------------------TTCCTATTTCGTGCGGAACGAAA-AGGCTTATGACGTAGTGACTCATTCG------------------------------------------------------------------------
droYak3	2R:5513197-5513478 -		TG-A-----AAACACAATATCCTGCG---AAACTCAGTGCTATACTCAATTTAACGCGGGTGAGTT----------------TGTCTGACTCAT--GAGCGACTATTTAATATTCTTAGACAATGGTA-------------GTG-----------------G-CCCTCTTATCGTTCAG-------TGCAGCCGAAGGTGATAAGCGATTATCTC-----TGTTATTGATAGCTATT----G------------ATCCTTGTTTTCCCTGT----------ACTTCCATAGCACTTTTCTAATTTCGTGCGGAACGAAA-AGGTTTATGATGTAGTGACTCATTCGGCTGAGAAGCAAAGGCCACCTGGCTTT----AACGTT-----------------------------------
droEug1	scf7180000409019:6995-7115 +		GT-G-----GAGATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCCCAT-----TGGTTTTGGTACCGGTT----G------------ATCCTGATTTTC--------CTGTAAAGTTTCGATG-----------------CCCGCACCAAAACCGGTTAATAATATTATT---GTTTACA-AA---TTTGG-----------CCA-TGACTTCGTT-----------------------------------
droBia1	scf7180000302422:4658998-4659186 +		CC-A-----AAATGCTGAAGAGTGTT---CTAATGATTGTTACACCTCGGTATCTGCAGGTGAGTT----------------CGAATGACTCAT--GACCGACTATTTCACATTCTTAGACAAAGGTA---AATGCAGGC-----------AGTGGCAGTGGCCTCCCTTATCGATCAT-------GTCAGCCAAA-------GGCGATTATCTC-----TGTTAGTGATAAG-GTA----G------------ATCCTAATTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415357:139115-139395 -		CC-A-----AACTTCTTCGCAAAGTAATTGCACTGAATGTTTCACCGCCATAAACACAGGTGAGCT----------------TGTGTGACTCAT--GACCGACTATTTCATATTCTTAGGCAAAGGTA---AATGCAGTCAGTG-----------------GACTCTCTTATCGATCAG-------GGCAGCTACATGCGATAAGCGATTATCTC-----T--CATTGATAGC-ACT----G------------ATCCTTATTTTACACGAATTCT--------------------TTTTATTTTCGAGCGGTA--AAA-ACATTTATTATTTAGTGATTCATTCAGGTATTATTCCA---TGAGCTGGCTTTTG-TTATATG-----------------------------------
droEle1	scf7180000491046:4006467-4006737 +		CGCGGAAATCACTACTGTAGAATGCA---CGGGTGATTGCTATACCT------CCACAGGTGAGTTT---------------TGCATGACTCAT--GCCCGACTATTTTATGTTCTTAGACAAAGGTAGGAAATGCAGGCAGTG-----------------GACTCCATTACCAAAATG-------GGCAGCTACAAGCGATAAGCGATTATCTC-----TGTTATTGATAAC-ACT----G------------ATCCTTATTTTCCACGG---------AATTTCAATACTAACTTATTAATTTTGAACGGTACAAA---TATTTATGTTCTGGTGATTCATTCAAGTA---TTCCA------------------------------------------------------------
droRho1	scf7180000770662:7631-7808 +		TG-A-----AACTT---TCAATTGCA---CTGGTAATTGCTATACC------AGCACAGGTGAGTT----------------TCTATGAGTCAT--GCCCGACCATTTCATATTCTTAGACAAAGGTA---AATGCTGCC---G-----------------GACTCTCTTATCAAACTG-------GGCAGCTTTAAGCGATAAGCGATTATCTC-----TA---TTGATAAC-GCTTAAGG------------ATCACTGTGT----------------------------------------------------------------------------------------------------------------------T-----------------------------------
droFic1	scf7180000454144:552900-553087 +		AC-A-----AATTGCTGTAGACTGCA---CCACCGATTGCTATACTT------CAGTGGGTGAGTA----------------TCTATGACTCAT--GAACGACTATTTCATGTTCTTAGACAAAGGCA---AATTCAGACAGTG-----------------GCCACTCTTATCAATCGA-------GGCAGCTA-AAGCGATAAGCGATTATCTATATTCTGTTATTGAAAAT-ACT----G------------ATCCTTATTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302570:598041-598133 +		CG-T-----AACCGGTGTGGATTGCTCCAGTAACAATTGCTTTACCG------CCACAGGTGAGTTCCT-------------CCCATGACTCAT--CCGAGACTATTTCATATTCTTAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_12916:5908301-5908532 -		AG-T-----TGATTCTGTAGACTGCG---GAAATTTGGAATGCGCTATAGCTACTACTAGTAAGTTTTTATACA--------TATATGACTCATATGGCCGACTATTTTGAAATCTTAGATTATAATG-------------GAGACAAAGCAAATGCAGGGCCTCCTCTTATCGATTATGGCTTGTGGCAGTTGCGGGCGATAAGCGATTATCTT-----------------------------------------------------------------------------------------------------------------------------GTTTCTA-CG---TATTG-----------ATA-TTACTCTAATATATAATTTAATGGCAA-ATA--------------
droBip1	scf7180000396568:935146-935399 +		GT-T-----G-ACACTGTAGACTGCG---GTAACAAAGAATGCGCTATAAATACTACTGGTAGGTTTTCATATACATATGTACATATGACTCATGTGGCCGACTATTTCGAATTCTTAGATTAAAATT-------------GAGACAAAGCAAATGCAGGGCCTTCTCTTATCGATTATGGCTTGTGGCAGTTACGGCCGATAAGCGATTATCTT-----------------------------------------------------------------------------------------------------------------------------GTTTCCA-CC---TATTG-----------ATA-TTACTCTAATATATAATTTAATGAAAGAATAAACCTATTTTATGA
dp5	4_group3:7947236-7947311 +		TT-T-----TTCTACCGTGGACTGCA---CAAATGATTGTTTTACTT------CTGCAGGTTAGTACCC-----------CACCTATGACTCAT--GACAGATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_1:9394682-9394757 +		TT-T-----TTCTACCGTGGACTGCA---CAACTGATTGTTTTACTT------CTGCAGGTTAGTACCC-----------CACCTATGACTCAT--GACAGATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TC-A-----AACTTCTACAGCCTGTG---AAACTGAGTGCTATACTCAAATTACCGCAGGTGGGTT----------------TGTATGACTCAT--GACCGACTTTTTAATATTCTTAGACGGGGGTA-------------GTG-----------------G-CCCTCTTATCGATCAG-------TGCAGCCGAAAGTGATAAGCGATTATCTC-----TGTTTTTGATAGCTATT----G------------ATCCTTATTTTC--------TT--------------------TTCTAATTTCGTGCGAAACAAAAGAGGTTTATGATG---TGACTCATTTGG-CA---TTTCA-----------TTT-TATTTTCGTG-----------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........CTTCTACAGCCTGTG---AAAC.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CTACAGCCTGTG---AAACTG...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTG---AAACTGAGTGCTATAC.....................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.C-A-----AACTTCTACAGCCTGTG---AAACTG...............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CTACAGCCTGTG---AAACTGAGTGCT.........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...A-----AACTTCTACAGCCTGTG---AAACTGAGT............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AACTTCTACAGCCTGTG---AAACTGAGT............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GCCTGTG---AAACTGAGTGC..........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................GCTATACTCAAATTACCGCAG.......................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AACTTCTACAGCCTGTG---AAACT................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................AT--GACCGACTTTTTAATATT................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGCGATTATCTC-----TGTTTTT...............................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTG---AAACTGAGTGCTATACT....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AACTTCTACAGCCTGTG---AAACTG...............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.C-A-----AACTTCTACAGCCTGTG---AAACT................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CTTCTACAGCCTGTG---AAACTG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TC-A-----AAATACTAGATCCTGTG---AAACTGAGTGCTATACTCAAATTACCGCAAGTGGGTT----------------TGTATGACTCAT--GACCGACTTTTTAATATTCTTAGACGGGGGTA-------------GTG-----------------G-CCCTCTTATCGATCAG-------TGCAGCCGAAAGTGATAAGCGATTATCTC-----TGTATTTGATAGCTATT----G------------ATCCTTATTTTC--------TT--------------------TTCTAATTTCGTGCGGAACGGAACAGGTTTATGATGTTGTGACTCATTTGG-CA---TTTCA-----------TTT-TATTTTCGTG-----------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................GATCCTGTG---AAACTGAGT............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.......................GTG---AAACTGAGTGCTATACT....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
............TACTAGATCCTGTG---AAACTGAGTGC..........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.........................................ATACTCAAATTACCGCAAG......................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...A-----AAATACTAGATCCTGTG---AAACTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
.......................................CTATACTCAAATTACCGCA........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................AGCCGAAAGTGATAAGCGATTATCTC-----T.....................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0

dm3

TC-A-----AACTTCTATAGAGTGTG---ATAATGAATGCTATACTCTTATTAACGCAGGTGGGTT----------------TGTATGACTCAT--GACCGACTATTTCATATTCTTAGACGGGGGTA-------------GTG-----------------G-CCCTCTTATCGATCAG-------TGCAACCAAAGGTGATAAGCGATTATCTCTTTT-TCTTTTTGATAGCTATT----G------------ATCCTTGTTTTC--------TT--------------------TTCTAATTTCGTGCGGATCGAAAAAGGTTTATGATGTTGTGACTCATTTGGCAGTTACTGCA---CTACCTGGCTTT----TTCGTG-----------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............CTATAGAGTGTG---ATAATGAA.............................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0
..............CTATAGAGTGTG---ATAATGAG.............................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
.......................GTG---ATAATGAATGCTATACTCT..................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TATAGAGTGTG---ATAATGAATG...........................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............TTCTATAGAGTGTG---ATAATG...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..................AGAGTGTG---ATAATGAATGC..........................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
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TC-A-----AACTTCTATAGAGTGTG---AT...................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........CTTCTATAGAGTGTG---ATAATGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GACTCATTTGGCAGTTACTGCA---C........................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TTCTATAGAGTGTG---ATAATGAATGC..........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................AGAGTGTG---ATAATGAATG...........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TC-A-----GGAGACAACATCCTGCG---ATAATGAGTGCTATACCCTTATTAGCTCAGGTGAGTT----------------TGTATGACTCAT--GAGCGACTATTTAATATTCTTAGACAAGGGTA-------------GTG-----------------G-CCCTGTTATCGATCAG-------TGCAGGCAAAAGTGATAAGCGATTATCTCTGTT-AGCTATTGACAGCTAATCAAGGATCAATTTCTTGATCTCAA--------GGATCTT--------------------TTCCTATTTCGTGCGGAACGAAA-AGGCTTATGACGTAGTGACTCATTCG------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................ATACCCTTATTAGCTCAG.......................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.................................................................T----------------TGTATGACTCAT--GAGCGACT..........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0

droYak3

TG-A-----AAACACAATATCCTGCG---AAACTCAGTGCTATACTCAATTTAACGCGGGTGAGTT----------------TGTCTGACTCAT--GAGCGACTATTTAATATTCTTAGACAATGGTA-------------GTG-----------------G-CCCTCTTATCGTTCAG-------TGCAGCCGAAGGTGATAAGCGATTATCTC-----TGTTATTGATAGCTATT----G------------ATCCTTGTTTTCCCTGT----------ACTTCCATAGCACTTTTCTAATTTCGTGCGGAACGAAA-AGGTTTATGATGTAGTGACTCATTCGGCTGAGAAGCAAAGGCCACCTGGCTTT----AACGTT-----------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................GTGAGTT----------------TGTCTGACTCAT--GAGCGACT..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................TGCTATACTCAATTTAACGCGG.......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................AGTT----------------TGTCTGACTCAT--GAGCGACTA.........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AGTGACTCATTCGGCTGAGA.................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.G-A-----AAACACAATATCCTGCG---AAACTCA..............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................ATTTAATATTCTTAGACAATGGTA-------------GT...................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............AATATCCTGCG---AAACTCAGT............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................ATACTCAATTTAACGCGGGA.....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........AAACACAATATCCTGCG---AAAC.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................CAGTGCTATACTCAATTTAACGC.........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GATGTAGTGACTCATTCGGCTGAG..................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................GTT----------------TGTCTGACTCAT--GAGC..............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................GCG---AAACTCAGTGCTATACTCAATTT..............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................GCTATACTCAATTTAACGCGG.......................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GAGAAGCAAAGGCCACCTGGC................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................ATCGTTCAG-------TGCAGCCGAAGGT...........................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GAAA-AGGTTTATGATGTAGT..................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GAAA-AGGTTTATGATGTAGTGACT..............................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ATGATGTAGTGACTCATTCGGCTGAGAAG...............................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ATGATGTAGTGACTCATTCGGCC.....................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................CTCAGTGCTATACTCAATTTAACGCGG.......................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ATGATGTAGTGACTCATTCGGCT.....................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................CAGTGCTATACTCAATTTAACGCGGGAA....................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CATTCGGCTGAGAAGCAAA...........................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................ATATCCTGCG---AAACTCAGTGCTATACT....................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEug1

GT-G-----GAGATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCCCAT-----TGGTTTTGGTACCGGTT----G------------ATCCTGATTTTC--------CTGTAAAGTTTCGATG-----------------CCCGCACCAAAACCGGTTAATAATATTATT---GTTTACA-AA---TTTGG-----------CCA-TGACTTCGTT-----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CC-A-----AAATGCTGAAGAGTGTT---CTAATGATTGTTACACCTCGGTATCTGCAGGTGAGTT----------------CGAATGACTCAT--GACCGACTATTTCACATTCTTAGACAAAGGTA---AATGCAGGC-----------AGTGGCAGTGGCCTCCCTTATCGATCAT-------GTCAGCCAAA-------GGCGATTATCTC-----TGTTAGTGATAAG-GTA----G------------ATCCTAATTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CC-A-----AACTTCTTCGCAAAGTAATTGCACTGAATGTTTCACCGCCATAAACACAGGTGAGCT----------------TGTGTGACTCAT--GACCGACTATTTCATATTCTTAGGCAAAGGTA---AATGCAGTCAGTG-----------------GACTCTCTTATCGATCAG-------GGCAGCTACATGCGATAAGCGATTATCTC-----T--CATTGATAGC-ACT----G------------ATCCTTATTTTACACGAATTCT--------------------TTTTATTTTCGAGCGGTA--AAA-ACATTTATTATTTAGTGATTCATTCAGGTATTATTCCA---TGAGCTGGCTTTTG-TTATATG-----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGCGGAAATCACTACTGTAGAATGCA---CGGGTGATTGCTATACCT------CCACAGGTGAGTTT---------------TGCATGACTCAT--GCCCGACTATTTTATGTTCTTAGACAAAGGTAGGAAATGCAGGCAGTG-----------------GACTCCATTACCAAAATG-------GGCAGCTACAAGCGATAAGCGATTATCTC-----TGTTATTGATAAC-ACT----G------------ATCCTTATTTTCCACGG---------AATTTCAATACTAACTTATTAATTTTGAACGGTACAAA---TATTTATGTTCTGGTGATTCATTCAAGTA---TTCCA------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TG-A-----AACTT---TCAATTGCA---CTGGTAATTGCTATACC------AGCACAGGTGAGTT----------------TCTATGAGTCAT--GCCCGACCATTTCATATTCTTAGACAAAGGTA---AATGCTGCC---G-----------------GACTCTCTTATCAAACTG-------GGCAGCTTTAAGCGATAAGCGATTATCTC-----TA---TTGATAAC-GCTTAAGG------------ATCACTGTGT----------------------------------------------------------------------------------------------------------------------T-----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AC-A-----AATTGCTGTAGACTGCA---CCACCGATTGCTATACTT------CAGTGGGTGAGTA----------------TCTATGACTCAT--GAACGACTATTTCATGTTCTTAGACAAAGGCA---AATTCAGACAGTG-----------------GCCACTCTTATCAATCGA-------GGCAGCTA-AAGCGATAAGCGATTATCTATATTCTGTTATTGAAAAT-ACT----G------------ATCCTTATTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CG-T-----AACCGGTGTGGATTGCTCCAGTAACAATTGCTTTACCG------CCACAGGTGAGTTCCT-------------CCCATGACTCAT--CCGAGACTATTTCATATTCTTAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AG-T-----TGATTCTGTAGACTGCG---GAAATTTGGAATGCGCTATAGCTACTACTAGTAAGTTTTTATACA--------TATATGACTCATATGGCCGACTATTTTGAAATCTTAGATTATAATG-------------GAGACAAAGCAAATGCAGGGCCTCCTCTTATCGATTATGGCTTGTGGCAGTTGCGGGCGATAAGCGATTATCTT-----------------------------------------------------------------------------------------------------------------------------GTTTCTA-CG---TATTG-----------ATA-TTACTCTAATATATAATTTAATGGCAA-ATA--------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................GAAATTTGGAATGCGCTAT..................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	1	0
.....................CTGCG---GAAATTTGGAATGCGCT....................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.........................G---GAAATTTGGAATGCGCTAT..................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.........TGATTCTGTAGACTGCG---GA...................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
........................CG---GAAATTTGGAATGCGCTATA.................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
................GTAGACTGCG---GAAATTTGGAATGC.......................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.........................G---GAAATTTGGAATGCGCTATAG................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.............TCTGTAGACTGCG---GAAATTTGGA...........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................AGACTGCG---GAAATTTGGAATGC.......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..................AGACTGCG---GAAATTTGGAATGCGCTAT..................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................GTAGACTGCG---GAAATTTGGAATG........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
................GTAGACTGCG---GAAATTTGGAATGCGCT....................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
........................CG---GAAATTTGGAATGCGCTATAGCTACTA..........................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................CAAATGCAGGGCCTCCTCTTATCGAT..................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........GATTCTGTAGACTGCG---GA...................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.G-T-----TGATTCTGTAGACTGCG---GA...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
................GTAGACTGCG---GAAATTTGGAA..........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................G---GAAATTTGGAATGCGCTATA.................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.........TGATTCTGTAGACTGCG---GAAATTTGG............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
...................................TGGAATGCGCTATAGCTACC...........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................GACTGCG---GAAATTTGGAATGCGC.....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........GATTCTGTAGACTGCG---GAA..................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.........................G---GAAATTTGGAATGCGCT....................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0

droBip1

GT-T-----G-ACACTGTAGACTGCG---GTAACAAAGAATGCGCTATAAATACTACTGGTAGGTTTTCATATACATATGTACATATGACTCATGTGGCCGACTATTTCGAATTCTTAGATTAAAATT-------------GAGACAAAGCAAATGCAGGGCCTTCTCTTATCGATTATGGCTTGTGGCAGTTACGGCCGATAAGCGATTATCTT-----------------------------------------------------------------------------------------------------------------------------GTTTCCA-CC---TATTG-----------ATA-TTACTCTAATATATAATTTAATGAAAGAATAAACCTATTTTATGA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TT-T-----TTCTACCGTGGACTGCA---CAAATGATTGTTTTACTT------CTGCAGGTTAGTACCC-----------CACCTATGACTCAT--GACAGATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.T-T-----TTCTACCGTGGACTGCA---C....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	5.00	5	0	5	0	0	0	0	0	0	0	0
...........CTACCGTGGACTGCA---CAAAT................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.T-T-----TTCTACCGTGGACTGCA---CA...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..............................AAATGATTGTTTTACTT------CTGCAGAGC....................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	2
.T-T-----TTCTACCGTGGACTGC.........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................GCA---CAAATGATTGTTTTACTT------CT...........................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............CCGTGGACTGCA---CAAATGATTGTT.........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........CTACCGTGGACTGCA---CAAATG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................GCAGGTTAGTACCC-----------CACCTATGACT.......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................TGATTGTTTTACTT------CTGCAGA......................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.T-T-----TTCTACCGTGGACTGCA---CAAAT................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................CAAATGATTGTTTTACTT------CTGC.........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................ATTGTTTTACTT------CTGCAGGTTAGTACCC-----------..................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
TT-T-----TTCTACCGTGGACTGC.........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...T-----TTCTACCGTGGACTGCA---CAAAT................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................CA---CAAATGATTGTTTTACTT------CTG..........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TT-T-----TTCTACCGTGGACTGCA---CAACTGATTGTTTTACTT------CTGCAGGTTAGTACCC-----------CACCTATGACTCAT--GACAGATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................ACTGCA---CAACTGATTGTTTTACTT------C............................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
.T-T-----TTCTACCGTGGACTGCA---CAAC.................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0
.T-T-----TTCTACCGTGGACTGCA---C....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	1	2	0	0	0	0
.T-T-----TTCTACCGTGGACTGCA---.....................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
...T-----TTCTACCGTGGACTGCA---CAACTGATTGT..........................................................................................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0	0
.........TTCTACCGTGGACTGCA---CAACT................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
...T-----TTCTACCGTGGACTGCA---CAACTG...............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.T-T-----TTCTACCGTGGACTGCA---CAACTGATT............................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
......................TGCA---CAACTGATTGTTTTACTT------CTGC.........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...T-----TTCTACCGTGGACTGCA---C....................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...........CTACCGTGGACTGCA---CAACTGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...............CGTGGACTGCA---CAACTGATTGTT.........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...T-----TTCTACCGTGGACTGCA---.....................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
...........CTACCGTGGACTGCA---CAACTGATTGTT.........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................A---CAACTGATTGTTTTACTT------CTGCAG.......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...........CTACCGTGGACTGCA---CAACTGATTGT..........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.T-T-----TTCTACCGTGGACTGCA---CAACTG...............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................CA---CAACTGATTGTTTTACTT------CTGC.........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.T-T-----TTCTACCGTGGACTGCA---CAACT................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
............TACCGTGGACTGCA---CAACT................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................GATTGTTTTACTT------CTGCAGAGC....................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0

dsi_17582

2l:18551773-18551922 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.9	-19.3