ID:

dsi_17577

 Coordinate:

3l:7915639-7915788 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.4

Flybase annnotation

exon [3l_7915415_7915638_+]; CDS [3l_7915415_7915638_+]; intron [3l_7915639_7915944_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGAAGCGGGCATTGAACAAGGAGCTGCCGGCGTAGCTGGCGAAGGAGAAGGTTCGTATGAGCATTTAATCATTAAAAATATCTAGGGATAAAACCTAATATAATTTTGTCGCCCCGTTTCGTCACAGAGCATGAATCATAGAATATTTTTCGCTGGTTGTATTTGGGCTTTGCTTAATTTCGTTTATATCCCGAAATTGTATTAAAGCTGTAGCTTTCGTTTAATAACTTGGCTAAAAGCGATATTTTGT
***************************************************************************************************************.........(((.((((.....(((((..(((.....)))..)))))...)))))))********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 O001
Testis
 GSM343915
embryo
........................................................................................................................................................................................................ATTAAGGCTGGAGGTTTCGT.............................. 20 3 4 5.75 23 21 0 0 0 0 0 0 0 0 2 0 0
.........................................................................................................................................................................................................TTAAGGCTGGAGGTTTCGT.............................. 19 3 10 5.10 51 51 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TATTAAGGCTGGAGGTTTCGT.............................. 21 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
............TGAACAAGGAGCTGCCGGCGTA........................................................................................................................................................................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TTTCGCTGGTTGTATTTGGGC.................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................CGGCGTAGCTGGCGAAGGT............................................................................................................................................................................................................ 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...AGCGGGCATTGAACAAGGAGCTGCCGAC........................................................................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........ATTGAACAAGGAGCTGCCGGC........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................CCCCGTTTCGTCACAGAGCATG..................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....CGGGCATTGAACAAGGAGCTGCCGGC........................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............TGAACAAGGAGCTGCCGGCGTAGCT..................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................CCCCGTTTCGTCACAGAGCAT...................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
................................TAGCTGGCGAAGGAGAAGGTT..................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TTTGCTTAATTTCGTTTGTA.............................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TGTCGCCCCGTTTCGT................................................................................................................................ 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................GGCGTAGCTGGCGAAGGAGA.......................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................AAGGAGAAGGTTCGTATGAGC............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....CGGGCATTGAACAAGGAGCTGCC.............................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...AGCGGGCATTGAACAAGGAGCTGCCGGC........................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...AGCGGGCATTGAACAAGGAGCTGCCG............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................TTGTCGCTCCGTTTCGTC............................................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................CTTTCGTTGGATCACTTGGC................. 20 3 11 0.27 3 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ATGTCGCCCCGTTTCG................................................................................................................................. 16 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................GCTTAATTTCTTTTATAT............................................................. 18 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................GTTTACGCTGTAGCTTTCGTT............................. 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................TCTGTCGCCCCGATTCGT................................................................................................................................ 18 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................TGTCGCCCCGCTTCGT................................................................................................................................ 16 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................TGTCGCTCCGATTCGTC............................................................................................................................... 17 2 14 0.14 2 0 0 0 0 0 1 0 0 1 0 0 0
...........................................................................................................GTCGCTCCGATTCGTCA.............................................................................................................................. 17 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................TGAATCATAGAATCT........................................................................................................ 15 1 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
....GTGGGCATTGAACAA....................................................................................................................................................................................................................................... 15 1 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAGCTGTAGATTTCGTA............................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................TAATATAGTTTTGTCGT.......................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TCTTCGCCCGTAACTTGTTCCTCGACGGCCGCATCGACCGCTTCCTCTTCCAAGCATACTCGTAAATTAGTAATTTTTATAGATCCCTATTTTGGATTATATTAAAACAGCGGGGCAAAGCAGTGTCTCGTACTTAGTATCTTATAAAAAGCGACCAACATAAACCCGAAACGAATTAAAGCAAATATAGGGCTTTAACATAATTTCGACATCGAAAGCAAATTATTGAACCGATTTTCGCTATAAAACA
**********************************************************************************.........(((.((((.....(((((..(((.....)))..)))))...)))))))*************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
................................................TCCAAGCATACTCGTAAATTA..................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
................................................................................................................GGGGAAAGCAGTGTCTTGGACTT................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0
................................................................................................................GGGGAAAGCAGTGTCTTGGA...................................................................................................................... 20 3 5 0.60 3 1 0 2 0 0
..............................................................................................................CGGGGCGAAGCCTTGTCT.......................................................................................................................... 18 3 20 0.40 8 7 0 0 0 1
..............................................................................................................CGGGGCGAAGCCTTGTCTC......................................................................................................................... 19 3 8 0.38 3 3 0 0 0 0
................................................................................................................GGGGAAAGCAGTGTCTTGGAC..................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0
..................................CGACTGCTTCCTCTTC........................................................................................................................................................................................................ 16 1 7 0.14 1 0 0 0 1 0
.................................................................................................................GGGAAAGCAGTGTCTTGGA...................................................................................................................... 19 3 20 0.10 2 0 0 1 0 1
.............................................................................................................................................................................................GGGCTTTAACACAATT............................................. 16 1 11 0.09 1 0 0 1 0 0
.....................................................................................................................AAACAGGGTCTCGTACT.................................................................................................................... 17 2 17 0.06 1 1 0 0 0 0
....................................................................................................................AAAACAGGGTCTCGTAC..................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0

Generated: 04/24/2015 at 10:32 AM