ID:

dsi_17575

 Coordinate:

3r:11955514-11955713 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.1 -7.0 -6.9

Flybase annnotation

CDS [3r_11955385_11955570_+]; three_prime_UTR [3r_11955571_11955834_+]; exon [3r_11955385_11955834_+]

No Repeatable elements found

Sense Strand Reads

############################################################################################################################################################################################################################################################################################################
CGCGCATCTGCAACCAGCACAACGGAGCCTCGACTCCATCCTTGGCCAGCGTAAGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTTTATCCGCTCCTTCTACTAAGCTAAGCTAAGCTCAACTGTCCACTCTCTCCGATGTTTCCACTTATATAACTCTTCCAAGTCAGCTCAAACCTCTGGCAATCGGGAATCTCAACACCTAATGCTGTATTTTACTCTTGACCTTTTTGTTGGTTTGTTTTTTAGGCCAATTGAAACGCAAGCCGTCCAATTATGCAGCTCGAATATGTGTATCA
***********************************************************************************************************************************************************************************.(((((((..(((....((((.....((........)).....)))))))..))))))).************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 M023
head
 M024
male body		 O001
Testis
 SRR902009
testis
 SRR902008
ovaries
 O002
Head
......................................................................................................................................................................................................................TTTTACTCTTGACCTTTTTGTTGGT............................................................. 25 0 1 19.00 19 7 8 2 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TCCAATTATGCAGCTCGAATATGTG..... 25 0 1 14.00 14 4 7 0 2 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TCTGGCAATCGGGAATCTCAACACC................................................................................................ 25 0 1 5.00 5 3 0 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGTATTTTACTCTTGACCTTTTTGTTGGT............................................................. 29 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TCTGGCAATCGGGAATCTCAACAC................................................................................................. 24 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................TTTTTTAGGCCAATTGAAACGCAAGC................................ 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TATTTTACTCTTGACCTTTTTGTTGGT............................................................. 27 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAATGCTGTATTTTACTCTTGACC........................................................................ 24 0 1 2.00 2 0 0 0 0 0 0 0 1 1 0 0 0 0
.....................................................................................................................................................................................................................ATTTTACTCTTGACCTTTTTGTTG............................................................... 24 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGTATTTTACTCTTGACCTTTTTGTTGG.............................................................. 28 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTTACTCTTGACCTTTTTGTTGG.............................................................. 24 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTACTCTTGACCTTTTTGTTGGTTT........................................................... 25 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGTATTTTACTCTTGACCTTTTTGT................................................................. 25 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................CGGGAATCTCAACACCTAATGCTGTA...................................................................................... 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAATGCTGTATTTTACTCTTGACCT....................................................................... 25 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
.................................................................................................................................................................................CCTCTGGCAATCGGGAATCTCAACACC................................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TCCAATTATGCAGCTCGAATATGTGTT... 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TCAGCTCAAACCTCTGGCAATCGGGA........................................................................................................... 26 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................TAGGCCAATTGAAACGCAAGCCGTCCAA......................... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................TTGTTTTTTAGGCCAATTGAAACGCA................................... 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TCAGCTCAAACCTCTGGCAATCGGGAATC........................................................................................................ 29 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................CCAATTATGCAGCTCGAATATGTG..... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................CAATTATGCAGCTCGAATATGTGTTT.. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TCAAACCTCTGGCAATCGGGAATC........................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TAAGCTCAACTGTCCACTCTCTCCGA................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................TTTTAGGCCAATTGAAACGCAAGC................................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................TATTTTACTCTTGACCTTTTTGTTGG.............................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......TCTGCAACCAGCACAACGGAGCCTCGAC.......................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CTGGCAATCGGGAATCTCAACACCT............................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTTACTCTTGACCTTTTTGTTGGTTT........................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AACCTCTGGCAATCGGGAATCTCAACACC................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GACCTTTTTGTTGGTTTGTTTTTTAGGC................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................CAATTGAAACGCAAGC................................ 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTAATGCTGTATTTTACTCTTGACC........................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................CAACTGTCCACTCTCTCC.................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CCTAATGCTGTATTTTACTCTTGACCT....................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TTATGCAGCTCGAATATGTGTATC. 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................CTCTGGCAATCGGGAATCTCAACACC................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTACTCTTGACCTTTTTGTTGGTT............................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATCGGGAATCTCAACACCTAATGCT......................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ACCTAATGCTGTATTTTACTCTTG........................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGGCAATCGGGAATCTCAACAC................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................CAGCTCAAACCTCTGGCAATCGGGA........................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................GCCAATTGAAACGCAAGCCGTCCAA......................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATATAACTCTTCCAAGTCAGCTCAAAC.......................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................TGTTTTTTAGGTCATTTGAAACGCA................................... 25 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................TCAAACCTCTGGCAATCGGGAATCTCAAC................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TCAAACCTCTGGCAATCGGGAATCTCAACACC................................................................................................ 32 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................TTTAGGCCAATTGAAACGCAAGCCGTCCA.......................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CTGTATTTTACTCTTGACCTTTTTGT................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GTATTTTACTCTTGACCTTTTTGTTGGT............................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TCGGGAATCTCAACACCTAATGCTGT....................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAACACCTAATGCTGTATTTTACTCT............................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGCTGTATTTTACTCTTGACCTTTTTGT................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAACCTCTGGCAATCGGGAATCTCAACAC................................................................................................. 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................ATCGGGAATCTCAACAC................................................................................................. 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................GCCAATTGAAACGCAAGCCGTCCAAT........................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TCAACTGTCCACTCTCTCCGATGTT............................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGGCAATCGGGAATCTCAACACCTAA............................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................AATTATGCAGCTCGAATATG....... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................TCTCAACACCTAATGCTGTATTT................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................TCAAACCTCTGGCAATCGGGAATCTCAACAC................................................................................................. 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TCAAACCTCTGGCAATCGGGAATCTCAA.................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................TGAAACGCAAGCCGTCCAATTATGCAGC................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................CGTCCAATTATGCAGCTCGAATATGTG..... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CCTAATGCTGTATTTTACTCTTGAC......................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TCTGGCAATCGGGAATCTCAAC................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................CAATTATGCAGCTCGAATATGTG..... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATTTTACTCTTGACCTTTTTGTTGGT............................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATATAACTCTTCCAAGTCA.................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................TTTTACTCTTGACCTTTTTGTTGGTT............................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................ACACCTAATGCTGTATTTTACTCTTG........................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGTATTTTACTCTTGACCTTTTTG.................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................AGCCGTCCAATTATGCAGC................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGCTGTATTTTACTC.............................................................................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTTTGTTGGTTTGTTTTTTAGGCCAA............................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................TTTTTAGGCCAATTGAAACGCAAGC................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.GCGCATCTGCAACCAGCACA....................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
......TCTGCAACCAGCACAACGGAGCCT.............................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGCTGTATTTTACTCTTGACCTTTT.................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TAGGCCAATTGAAACGCA................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................TAGCTCGCTGCTAGGTCT.......................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........TGCAACCAGCACAACGGTA................................................................................................................................................................................................................................................................................. 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CCTTTTTGTTGGTTTCT......................................................... 17 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................TTAGGTCCCTGCAAGGTCT.......................................................................................................................................................................................................................... 19 3 10 0.20 2 0 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................ACCTCTTGCAATCGG............................................................................................................. 15 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATCTAACTCTTCCAGCTCA.................................................................................................................................. 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTTTTGTTAGTTTGTTTT...................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................TGGCAATCGGGCATC........................................................................................................ 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AATGTCGACACCTAATGCA......................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

GCGCGTAGACGTTGGTCGTGTTGCCTCGGAGCTGAGGTAGGAACCGGTCGCATTCGCGGTAGGAATCGAGGGACGACCCAGAAACCAAATAGGCGAGGAAGATGATTCGATTCGATTCGAGTTGACAGGTGAGAGAGGCTACAAAGGTGAATATATTGAGAAGGTTCAGTCGAGTTTGGAGACCGTTAGCCCTTAGAGTTGTGGATTACGACATAAAATGAGAACTGGAAAAACAACCAAACAAAAAATCCGGTTAACTTTGCGTTCGGCAGGTTAATACGTCGAGCTTATACACATAGT
*************************************************************.(((((((..(((....((((.....((........)).....)))))))..))))))).*********************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M053
female body
 SRR902009
testis
...........................GGAGCTGGGGTTGGAACCGTTC........................................................................................................................................................................................................................................................... 22 3 1 5.00 5 2 2 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GCAGGTTAATACGTCGAGCTTA.......... 22 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
...........................GGAGCTGGGGTTGGAACC............................................................................................................................................................................................................................................................... 18 2 3 1.00 3 3 0 0 0 0 0 0 0 0 0
............................GAGCTGGGGTTGGAACCGTTC........................................................................................................................................................................................................................................................... 21 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................CAAATAGGAGGGGAAGATGTTT................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...........................GGAGCTGGGGTTGGAACCGTT............................................................................................................................................................................................................................................................ 21 3 4 0.75 3 1 1 0 0 0 0 1 0 0 0
...........................GGAGCTGGGGTTGGAACCG.............................................................................................................................................................................................................................................................. 19 2 3 0.67 2 1 0 1 0 0 0 0 0 0 0
.............GGTCGTGCTGCCTCGAAG............................................................................................................................................................................................................................................................................. 18 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................GAGAGAGGCTACAAAGG......................................................................................................................................................... 17 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
..................................................CATTCGCGGGAGGAATG......................................................................................................................................................................................................................................... 17 2 4 0.50 2 0 0 0 0 2 0 0 0 0 0
............................GAGCTGGGGTTGGAACCGTT............................................................................................................................................................................................................................................................ 20 3 10 0.40 4 1 1 2 0 0 0 0 0 0 0
............................GAGCTGGGGTTGGAACCG.............................................................................................................................................................................................................................................................. 18 2 5 0.40 2 0 1 0 0 0 0 1 0 0 0
...........................GGAGCTGGGGTTGGAAC................................................................................................................................................................................................................................................................ 17 2 11 0.36 4 2 0 2 0 0 0 0 0 0 0
.............................AGCTGGGGTTGGAACCG.............................................................................................................................................................................................................................................................. 17 2 16 0.31 5 2 1 2 0 0 0 0 0 0 0
..................................................CATTCGCGGGAGGAA........................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................AGATGGTCCGATTCGAT........................................................................................................................................................................................ 17 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AGGTTCAGTCGAGAT............................................................................................................................ 15 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0
.................................................CCATTCGCGGGAGGAATG......................................................................................................................................................................................................................................... 18 3 20 0.10 2 0 0 0 0 2 0 0 0 0 0
............................GAGCTGGGGTTGGAAC................................................................................................................................................................................................................................................................ 16 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................AGATGGTTCGATTCG.......................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 1 0 0 0
...........................GGTGCTGGGGTTGGAACCG.............................................................................................................................................................................................................................................................. 19 3 20 0.10 2 0 0 0 0 0 0 0 0 1 1
............................GAGCTGGGGTTGGAACC............................................................................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................CAAAGAATCAGGTTAACTAT....................................... 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0
...........................GGAGCTGGGGTTGGAACCT.............................................................................................................................................................................................................................................................. 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................AGGCGAGGAAGCTGACT................................................................................................................................................................................................. 17 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................AGGCGAGGAAGCTGA................................................................................................................................................................................................... 15 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0
.........................TCGGCGCTCAGGTAGG................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..............................GCTGGGGTTGGAACCG.............................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:11955464-11955763 + dsi_17575 CGCGCATCTGCAACCAGCACAACGGAGCCTCGACTCCAT---CCTTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCT----A---AGCT----AAGCT---CAA-CTG--------TCCACTCTCTCCGATGTTTCCAC---TTATATAACT----CTTCCAA----GTCAGCTCAAACCT--C--TG-GCAA--TCGGGAATCTCAA----CA--CCT--AATGCTG-TATT-TTACTC--TTGACCTTTTTGTTGGT-TTGTTTTTTAGGCCAATTGAAACGCAAGCCGTCCAATTATGCAGCTCGAATAT------GTGTATCA
droSec2 scaffold_0:12781125-12781424 + CGCGCATCTGCAACCAGCACAACGGAGCCTCGACTCCAT---CCTTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCT----A---AGCT----AAGCT---CAA-CTG--------TCCACTCTCTCCGATGTTTCCAC---TTATATAACT----CTTCCAA----GTCAGCTCAAACCT--C--TG-GCAA--TCGGGAATCTCAA----CA--CCT--AATGCTG-TATT-TTACTC--TTGACCTTTTTGTTGGT-TTGTTTTTTAGGCCAATTGAAACGCAAGCCGTCCAATTATGCAGCTCGAATAT------GTGTATCA
dm3 chr3R:9224314-9224611 - CGCGCATCTGCAACCAGCACAACGGAGCATCGACTCCAT---CTTTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCT----A---AGCT----AAGCT---CAA-CTG--------TCCACTCTCTCCGATGTTTCCAT---TTATATAACT----CTTCCAA----GTCAGCTCAAACCT--T--TG-GCAA--TCGGGAATCTCAA----CA--CCT--AATGCTG-TATT-TTGCTC--TTGACCTTTTTGTTGGT-TTGTTTTTTAGGCCAATTGAAACGCAAGCCGTCCAATTATGCAGCTCGAATAT------GTGTAT--
droEre2 scaffold_4770:12417423-12417721 + CGCGCATCTGCAACCAGCACAATGGAGCCTCGACTCCAT---CCTTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCT----A---AGCT----AAGCT---CAA-CTG--------TCCACTCTCTCCGACGTTTCCGC---TTATGTAACT----CTTCCAA----GTCAGCTCTGAACT--C--TG-GCAA--TCGGGAATCTCAA----CA--CTT--AATGCTG-TATT-TTACTC--TCGAACTTCTTGTTGGT-TTGTT-TTTAGGCCAATTGAAACGCAAGCCGTCCAATTATGCAGCTCGAATAT------GTGTATCA
droYak3 3R:13531303-13531600 - CGCGCATCTGCAACCAGCACAATGGAGCCTCGACTCCAT---CCTTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCT----A---AGCT----AAGCT---CAA-CTG--------TCCACTCTCTCCGATGTTTCCGC---TTATATAACT----CTTCCAG----C-CAGCTCAGAACT--C--TG-GCCA--TCGGGAATCTCAA----CA--CTT--AATGCTG-TATT-TTACCC--TTGAACTTCTTGTTGGT-TTGTT-TTTAGGCCAATTGAAACGCAAGCCGTCCAATTATGCAGCTCGAATAT------GTGTATCA
droEug1 scf7180000409802:779700-779998 + CTCGCATCTGCAACCAGCACAATGGAGCCAACACTCCTT---CCTTGGCCAGCGTA---AGCGCCATCCTTAGCTCCTTGATCGGTCTTTGGTTTA---TCCGCT---TCTTCTACTAAGCT----A---AGCT----AAGCTTAACAA-CTG--------TCCACTGTCTTCGATTTCTCCAC-------ATAACT----CTTCCAA----CTCAGCTCAGACCT--C--TG-GCAA--TCGGGAATCTCAA----CA--CTT--TATGCTA-TGTT-TTACTC--TTGAATTTTTTATTGGTTTTGTT-TTTAGGCCAATTGAAACGCAAGCCGTCCAATTATCCAGCTCGATTAT------GTGTATCA
droBia1 scf7180000302402:1929549-1929851 - CCCGCATCTGCAACGCGCACAACGGAGCCTCCACCCCTT---CCCTGGCCAGCGTA---AGCGCCGTCCTTAGCTCCCTGCTGGGTCTTTGGTTTC---TCCGCC---TCCTCTGCTAGGCT----A---GGCT----GGGCT---CTA-TCC--------TCAACTGTCTCTGGCTTTTCCAA----CACCAAACT----CTTCCAA----CTCAGCTCAGACCT--C--TG-GCAAATTCGGGAATCTCAATCTCCA--CTTTAAATTCTA-TGCC-TTACTC--TCGA--TTTTTGTTGGT-TTGTT-TTTAGGCCAACTGAAACCCAAGCCGTCCAATTGTCCAGCTCG-ATAT------GTGTATCA
droTak1 scf7180000410308:25368-25657 + CCCGCATTTGCAACCAGCACAACGGAGCCTCCACTCCTT---CCTTGGCCAGCGTA---AGCGCCGTCCTTAGCTCCCTGCTGGGTCTTTGGTTTC---TACGCT---CCTTCTGCTAAGCC----A---ATCTCCACAATCT---CCA-CTC--------TTCACTGTCTCTT-----------------ACAACT----CTTCCAA----CTCAGCTCAGACCT--C--TG-GCCAATTCGGGAATCTCAT----CA--CTT--AATGCTT-TGAT-TTACTC--TTGAATTCATTGTTGGT-TTGT--TTTAGGCCAATTGAAACGCAAGCCGTCCAATTATCCAGCTCGAATAT------GTGTATCA
droEle1 scf7180000491261:22410-22682 + CCCGCATCTGCAACCAGCACAACGGAGCCTCCACATCTT---CCTTGGCCAGCGTA---AGCGCCATCCTTGGCTCCCTGCTCGGTCTTTGGTTTA---TCCGCT---CCTTCCACTAAGCTG---------------------------------------------TCTCTGATTTTCCCAC-------AAAACT----CTTTCAA----CTAAACACACACCT--C--TG-GCGA--TCGTGAATCTCAA----GA--TCT--TGTGCAT-TGTT-TTACTC--TTGAACTTTTTATTGGT-ATGTT-TTTAGGCCAATTGAAACGCAAGTCGTCCAATTATCCAGCTAGAATAT------GTGTATCA
droRho1 scf7180000779659:489632-489895 + CCCGCATCTGCAACCAGCACAATGGAGCC---ACTTCAT---CCTTGGCCAGCGTA---AGCGCCGTCCTTGGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCG---CCTTCTACTAAGCTG---------------------------------------------TCTCTGATTTTCCCAC-------AAAACT----CTTCCAA----CTATTCTCACAACT--C--TG-GCAA--TCGCGAATCTCAA----GA--TCT--TGTGCAT-TGTT-TTATTC--CTTAACTTTTTATTGGT-ATGCT-TTTAGGCCAATTGAAACTCAAGCCGTCCG------CAGCTAGAATAT------GTGTATCA
droFic1 scf7180000453906:277078-277362 + CCCGCATCTGCAACCAGCACAACGGAGCCACCACTGCGT---CTTTGGCCAGCGTA---AGCGCGATCCTTAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCT----A---AG------------------CTG--------CCAACTGTCTCTGAACTTTCCAC---A---AAAACT----CTTTCAA----CTCAGCTCAGAACT--C--TG-GCAA--TCGGGAATCTCAT----CA--CTT--AACGCAT-TGTT-TTACTC--TTGATTTTTTTGTTGGT-TTC-T-TTTAGGCCAATTGAAAGGCAAGCCGTCCAATTATCCAGCTAGAATAT------GTGTATCA
droKik1 scf7180000302392:603005-603305 + CGCACATCTGCACTGCCCACAACGGTGCCGCCGCTCCTT---CGATCACCAGCGTA---AGCGCCATCCTTGGCTCCCTGCTGGGTCTTTGGTCTATCATCCGCC---TCTTCCACTAAGCTG---------C-------------CAA-CTG--------TCAGCCGCCTTTGCTATCTCCCACACCAACCCAACTTCAACTTCCAA----CTCAGC-CAGACCTTTC--TGTGCAA--TCGGGAATCTCAA----CC--GTT--AATGCCT-TGTT-TTACCT--TACCACCTTTTGTTGGT-TTGTT-TTTAGGCCAATTGAAAGCCAAGCCGTCCA--------GATAGAATATGAATCACAATATCA
droAna3 scaffold_13340:1783634-1783925 - CAAGGATCTGCACTGCCCACAATGGAGCCTCTACCTCCTTTGGCCTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTGATGGGTCTTTGGGCTC---TCCGCT---ACCTCTTCTAAGCTG-------------------T---CAA-CTG--------TCAACCATACCTGCTATCTCCCA-------CAAACT----CCTCCAT----CTCAGCCCAGTTCG--C--TGTGCAT--TCGGGAACCTTAA----AA--GTT--TATTCCCTTTTT-TTACTC--TTGAACTTTTTGTTGGT-TTGCT-TTTAGGCCAATTAAAACACAATTTGTCCATCCAACCAGCCCTTAAAA------GTGTATTA
droBip1 scf7180000396712:2551230-2551521 + CAAGGATCTGCACTGCCCACAATGGAGCCTCAACCTCCTTTGGCCTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTAATGGGTCTTTGGGCTC---TCCGCT---CCCTCTTCTAAGCTG-------------------T---CAA-CTG--------TCAACCATACCTGCTATCGCCCA-------CAAACT----CTTCCAC----CTCAGCCCAATTCG--C--TGTGCAT--TCGGGAACCTCAA----CA--GTT--TATTCGTTTTTA-ATACTT--TTGAACTTTTTGTTGGT-TTGCT-TTTAGGCCAATTAAAACACAATTCGTCCATCCATCCAGCTCTTAAAA------GTGCATTA
dp5 2:9885383-9885679 + CCAGAATCTGCGCTCAGCACAACGCCGCCGCCACCCCTA---GCCTGGCCAGCGTA---AGCGCCATCTTAAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCTG---------T-------------CAAGT-T-------TCCAACTGAATCTGAATCTG------------AA-TCTCAATCTTCAATTGCTTCCGCCCCAACTT--C--CGTGCAA--TGGGGAATCTCAA----TG--CCT--TATGATT-TGTT-TTTCTCTTTTGTTCTGTTTACTGGT-TTGCT-TCCAGGCCAATTGAAACCCAAGCCGTCCAATCGTCCAGCTCCAATATACAT--ATATATCA
droPer2 scaffold_0:10598729-10599015 - CCAGAATCTGCGCTCAGCACAACGCCGCCGCCACCCCTA---GCCTGGCCAGCGTA---AGCGCCATCTTAAGCTCCCTGCTGGGTCTTTGGTCTA---TCCGCT---CCTTCTACTAAGCTG---------T-------------CAAGT-T-------TCCAACTGAATCTGAA-------------------TCTCAATCTTCAATTGCTTCCGCCCCAACTT--C--CGTGCAA--TGGGGAATCTCAA----TG--CCT--TATGATT-TGTT-TTTCTCTTTTGTTCTGCTTACTGGT-TTGCT-TCCAGGCCAATTGAAACCCAAGCCGTCCAATCGTCCAGCTCCAATAT------ATATATCA
droWil2 scf2_1100000004943:6295667-6295934 - CTCGCATCTGTAGCCAGCATAATGCCGCC---GCTCCTG---GCTTGGCCAGCGTA---AGCGCCATCTTAAGCTCTCTATTGGGTCTTTGGTTTA---TCCGCT---ACTTTCTCTAAGCTG---------C---------------T-CTG--------TCCACTG------ATTTTCCC-------------------------------TCCACTCAGAGCTCTCAGAGTGCAA--CTATGAATCTCTT----AATTGTG--TATGTTGTTTGTTTTATT---TTATTCCATTTATTTTT-TTGCC-TTTAGGCTAAATGAAACTCATGCCGTCCGTATATCTACGCCGTATAT------CAGTCTCA
droVir3 scaffold_12855:2927403-2927520 + CACGCATCTGTGCCCAGCACAACGGCGCATCGAGT---------CTGGTTGGTGCC---AGCGCCCTTCTGAGCACCCTCTTGGGCATCTGGTTCG---TACGCC---AGCTTTACTAAGTGCC--T---GGCC----AAGCC---TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:10278632-10278736 - CCCGCATCTGCGCCCAACATAACGGCGCCATGGGT---------CTCGTTGGCACT---GGCTCCCTTCTCAGCGCCATCTTGGGCATCTGGTTCA---TGCGTCAGCTTTTCAACTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:3740172-3740396 - CACGCATCTGTTCCGAGCATAACGGCGCATCGGGTCT---------GGTTGGTGCCGGCAGTGCCCTTTTGGGCTCCCTGCTGGGTCTGTGGTTCC---TGCGCT---ACCTTTACTAAGTGGGCTAAGTGGCT----AAGCCT--TAA-ATGTTACATTT-------------------ATAA---TTGCATTATT----CT-------------------------G--CA-GTCA--CTTTGAATCTCTA----CA--ATT--TGTATAT-TG------CCC--T---------------------T-TCCGATCCATCTGAAACTCAAACCGTCCAAT------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGCGCATCTGCAACCAGCACAACGGAGCCTCGACTCCAT---CCTTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCT----A---AGCT----AAGCT---CAA-CTG--------TCCACTCTCTCCGATGTTTCCAC---TTATATAACT----CTTCCAA----GTCAGCTCAAACCT--C--TG-GCAA--TCGGGAATCTCAA----CA--CCT--AATGCTG-TATT-TTACTC--TTGACCTTTTTGTTGGT-TTGTTTTTTAGGCCAATTGAAACGCAAGCCGTCCAATTATGCAGCTCGAATAT------GTGTATCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................TT-TTACTC--TTGACCTTTTTGTTGGT-...................................................................25119.001900100087120000000
................................................................................................................................................................................................................................................................................................................................................TCCAATTATGCAGCTCGAATAT------GTG.....25114.001400000074201000000
.................................................................................................................................................................................................................................T--C--TG-GCAA--TCGGGAATCTCAA----CA--CC.............................................................................................................2515.00500000003110000000
...............................................................................................................................................................................................................................................................................TG-TATT-TTACTC--TTGACCTTTTTGTTGGT-...................................................................2913.00300000012000000000
.................................................................................................................................................................................................................................T--C--TG-GCAA--TCGGGAATCTCAA----CA--C..............................................................................................................2413.00300000020010000000
....................................................................................................................................................................................................................................................................................................................TTTTTTAGGCCAATTGAAACGCAAGC......................................2613.00300000003000000000
..................................................................................................................................................................................................................................................................................TATT-TTACTC--TTGACCTTTTTGTTGGT-...................................................................2713.00300000012000000000
.......................................................................................................................................................................................................................................................................T--AATGCTG-TATT-TTACTC--TTGACC...............................................................................2412.00211000000000000000
...................................................................................................................................................................................................................................................................................ATT-TTACTC--TTGACCTTTTTGTTG......................................................................2412.00200200000000000000
...............................................................................................................................................................................................................................................................................TG-TATT-TTACTC--TTGACCTTTTTGTTGG.....................................................................2812.00200010001000000000
....................................................................................................................................................................................................................................................................................TT-TTACTC--TTGACCTTTTTGTTGG.....................................................................2412.00200000001010000000
.......................................................................................................................................................................................................................................................................................TTACTC--TTGACCTTTTTGTTGGT-TT.................................................................2512.00200000010100000000
...............................................................................................................................................................................................................................................................................TG-TATT-TTACTC--TTGACCTTTTTGT........................................................................2512.00210000001000000000
.................................................................................................................................................................................................................................................CGGGAATCTCAA----CA--CCT--AATGCTG-TA................................................................................................2612.00200000001010000000
.......................................................................................................................................................................................................................................................................T--AATGCTG-TATT-TTACTC--TTGACCT..............................................................................2512.00200200000000000000
...............................................................................................................................................................................................................................CCT--C--TG-GCAA--TCGGGAATCTCAA----CA--CC.............................................................................................................2712.00200000002000000000
................................................................................................................................................................................................................................................................................................................................................TCCAATTATGCAGCTCGAATAT------GTGTT...2712.00200000002000000000
.....................................................................................................................................................................................................................TCAGCTCAAACCT--C--TG-GCAA--TCGGGA..............................................................................................................................2612.00200000001000001000
.........................................................................................................................................................................................................................................................................................................................TAGGCCAATTGAAACGCAAGCCGTCCAA...............................2812.00200000020000000000
.................................................................................................................................................................................................................................................................................................................TTGTTTTTTAGGCCAATTGAAACGCA.........................................2612.00200000001010000000
.....................................................................................................................................................................................................................TCAGCTCAAACCT--C--TG-GCAA--TCGGGAATC...........................................................................................................................2912.00200000020000000000
.................................................................................................................................................................................................................................................................................................................................................CCAATTATGCAGCTCGAATAT------GTG.....2411.00100000000100000000
..........................................................................................................................................................................................................................TCAAACCT--C--TG-GCAA--TCGGGAATC...........................................................................................................................2411.00100000001000000000
.....................................................................................................................................T----AAGCT---CAA-CTG--------TCCACTCTCTCCGA.....................................................................................................................................................................................................2611.00100000010000000000
......................................................................................................................................................................................................................................................................................................................TTTTAGGCCAATTGAAACGCAAGC......................................2411.00100010000000000000
..................................................................................................................................................................................................................................................................................TATT-TTACTC--TTGACCTTTTTGTTGG.....................................................................2611.00100000010000000000
......TCTGCAACCAGCACAACGGAGCCTCGAC..................................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
....................................................................................................................................................................................................................................C--TG-GCAA--TCGGGAATCTCAA----CA--CCT--..........................................................................................................2511.00100000010000000000
....................................................................................................................................................................................................................................................................................TT-TTACTC--TTGACCTTTTTGTTGGT-TT.................................................................2711.00100000010000000000
.............................................................................................................................................................................................................................AACCT--C--TG-GCAA--TCGGGAATCTCAA----CA--CC.............................................................................................................2911.00100000001000000000
.................................................................................................................................................................................................................................................................................................GACCTTTTTGTTGGT-TTGTTTTTTAGGC......................................................2811.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................CAATTGAAACGCAAGC......................................1611.00100000000001000000
......................................................................................................................................................................................................................................................................CT--AATGCTG-TATT-TTACTC--TTGACC...............................................................................2511.00100100000000000000
..................................................................................................................................................CAA-CTG--------TCCACTCTCTCC.......................................................................................................................................................................................................1811.00100000001000000000
.....................................................................................................................................................................................................................................................................CCT--AATGCTG-TATT-TTACTC--TTGACCT..............................................................................2711.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................TTATGCAGCTCGAATAT------GTGTATC.2411.00100010000000000000
................................................................................................................................................................................................................................CT--C--TG-GCAA--TCGGGAATCTCAA----CA--CC.............................................................................................................2611.00100000001000000000
.......................................................................................................................................................................................................................................................................................TTACTC--TTGACCTTTTTGTTGGT-T..................................................................2411.00100000000010000000
.............................................................................................................................................................................................................................................A--TCGGGAATCTCAA----CA--CCT--AATGCT....................................................................................................2511.00100000000001000000
..................................................................................................................................................................................................................................................................A--CCT--AATGCTG-TATT-TTACTC--TTG..................................................................................2411.00100000001000000000
.......................................................................................................................................................................................................................................TG-GCAA--TCGGGAATCTCAA----CA--C..............................................................................................................2211.00100000000000010000
......................................................................................................................................................................................................................CAGCTCAAACCT--C--TG-GCAA--TCGGGA..............................................................................................................................2511.00100000001000000000
............................................................................................................................................................................................................................................................................................................................GCCAATTGAAACGCAAGCCGTCCAA...............................2511.00100000010000000000
.............................................................................................................................................................................................ATATAACT----CTTCCAA----GTCAGCTCAAAC....................................................................................................................................................2711.00100010000000000000
..........................................................................................................................................................................................................................TCAAACCT--C--TG-GCAA--TCGGGAATCTCAA----C..................................................................................................................2911.00100000010000000000
..........................................................................................................................................................................................................................TCAAACCT--C--TG-GCAA--TCGGGAATCTCAA----CA--CC.............................................................................................................3211.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................TTTAGGCCAATTGAAACGCAAGCCGTCCA................................2911.00100000001000000000
..............................................................................................................................................................................................................................................................................CTG-TATT-TTACTC--TTGACCTTTTTGT........................................................................2611.00100000001000000000
................................................................................................................................................................................................................................................................................G-TATT-TTACTC--TTGACCTTTTTGTTGGT-...................................................................2811.00100000001000000000
................................................................................................................................................................................................................................................TCGGGAATCTCAA----CA--CCT--AATGCTG-T.................................................................................................2611.00100000000001000000
.........................................................................................................................................................................................................................................................TCAA----CA--CCT--AATGCTG-TATT-TTACTC--T....................................................................................2711.00100000000010000000
............................................................................................................................................................................................................................................................................TGCTG-TATT-TTACTC--TTGACCTTTTTGT........................................................................2811.00100000000100000000
............................................................................................................................................................................................................................AAACCT--C--TG-GCAA--TCGGGAATCTCAA----CA--C..............................................................................................................2911.00100000000000001000
.............................................................................................................................................................................................................................................A--TCGGGAATCTCAA----CA--C..............................................................................................................1711.00100000000001000000
............................................................................................................................................................................................................................................................................................................................GCCAATTGAAACGCAAGCCGTCCAAT..............................2611.00100000001000000000
..............................................................................................................................................T---CAA-CTG--------TCCACTCTCTCCGATGTT.................................................................................................................................................................................................2511.00100000010000000000
.......................................................................................................................................................................................................................................TG-GCAA--TCGGGAATCTCAA----CA--CCT--AA........................................................................................................2611.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................AATTATGCAGCTCGAATAT------G.......2011.00101000000000000000
.......................................................................................................................................................................................................................................................TCTCAA----CA--CCT--AATGCTG-TATT-T............................................................................................2311.00100010000000000000
..........................................................................................................................................................................................................................TCAAACCT--C--TG-GCAA--TCGGGAATCTCAA----CA--C..............................................................................................................3111.00100000001000000000
..........................................................................................................................................................................................................................TCAAACCT--C--TG-GCAA--TCGGGAATCTCAA----...................................................................................................................2811.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................TGAAACGCAAGCCGTCCAATTATGCAGC......................2811.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................CGTCCAATTATGCAGCTCGAATAT------GTG.....2711.00100000001000000000
.....................................................................................................................................................................................................................................................................CCT--AATGCTG-TATT-TTACTC--TTGAC................................................................................2511.00100000001000000000
.................................................................................................................................................................................................................................T--C--TG-GCAA--TCGGGAATCTCAA----C..................................................................................................................2211.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................CAATTATGCAGCTCGAATAT------GTG.....2311.00100000001000000000
...................................................................................................................................................................................................................................................................................ATT-TTACTC--TTGACCTTTTTGTTGGT-...................................................................2611.00100000000100000000
.............................................................................................................................................................................................ATATAACT----CTTCCAA----GTCA............................................................................................................................................................1911.00100001000000000000
....................................................................................................................................................................................................................................................................................TT-TTACTC--TTGACCTTTTTGTTGGT-T..................................................................2611.00100000001000000000
............................................................................................................................................................................................................................................................A----CA--CCT--AATGCTG-TATT-TTACTC--TTG..................................................................................2611.00100000010000000000
...............................................................................................................................................................................................................................................................................TG-TATT-TTACTC--TTGACCTTTTTG.........................................................................2411.00100000000100000000
...........................................................................................................................................................................................................................................................................................................................................AGCCGTCCAATTATGCAGC......................1911.00100000000001000000
............................................................................................................................................................................................................................................................................TGCTG-TATT-TTACTC--.....................................................................................1511.00100000010000000000
......................................................................................................................................................................................................................................................................................................TTTTGTTGGT-TTGTTTTTTAGGCCAA...................................................2611.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................TTTTTAGGCCAATTGAAACGCAAGC......................................2511.00100000000001000000
.GCGCATCTGCAACCAGCACA...............................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
......TCTGCAACCAGCACAACGGAGCCT......................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
............................................................................................................................................................................................................................................................................TGCTG-TATT-TTACTC--TTGACCTTTT...........................................................................2511.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................TAGGCCAATTGAAACGCA.........................................1811.00100000010000000000
........TGCAACCAGCACAACGGTA.........................................................................................................................................................................................................................................................................................................................................................1930.33100000010000000000
droSec2
CGCGCATCTGCAACCAGCACAACGGAGCCTCGACTCCAT---CCTTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCT----A---AGCT----AAGCT---CAA-CTG--------TCCACTCTCTCCGATGTTTCCAC---TTATATAACT----CTTCCAA----GTCAGCTCAAACCT--C--TG-GCAA--TCGGGAATCTCAA----CA--CCT--AATGCTG-TATT-TTACTC--TTGACCTTTTTGTTGGT-TTGTTTTTTAGGCCAATTGAAACGCAAGCCGTCCAATTATGCAGCTCGAATAT------GTGTATCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................TAGGCCAATTGAAACGCA.........................................1812.0020002
....................................................................................................................................................................................................................................................................................TT-TTACTC--TTGACCTTTTTGTTGGT-T..................................................................2611.0011000
...............................................................................................................................................................................................................................................................................................................................................GTCCAATTATGCAGCTCGAATAT------GTGT....2711.0010100
......................................................................................................GCT---CCTTCTACTAAGCT----A---AGCT----AA........................................................................................................................................................................................................................................2411.0011000
........................................................................................................................................................................................................................GCTCAAACCT--C--TG-GCAA--TCGGGAATC...........................................................................................................................2611.0011000
..................................................................................................................................................................................................................................................................................................................................TGAAACGCAAGCCGTCCAATTATGCAGC......................2811.0011000
................................................................................................................................................................................................................................................................................................................................ATTGAAACGCAAGCCGTCCA................................2011.0011000
......................................................................................................................................................CTG--------TCCACTCTCTCCGATGT..................................................................................................................................................................................................2011.0010100
.......................................................................................................................................................................................................................................................................................................TTTGTTGGT-TTGTTTTTTAGGCCAA...................................................2511.0010010
.......................................................................................................................................................................................................................................................................................................................................................ATGCAGCTCGAATAT------GTGT....1920.5010100
dm3
CGCGCATCTGCAACCAGCACAACGGAGCATCGACTCCAT---CTTTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCT----A---AGCT----AAGCT---CAA-CTG--------TCCACTCTCTCCGATGTTTCCAT---TTATATAACT----CTTCCAA----GTCAGCTCAAACCT--T--TG-GCAA--TCGGGAATCTCAA----CA--CCT--AATGCTG-TATT-TTGCTC--TTGACCTTTTTGTTGGT-TTGTTTTTTAGGCCAATTGAAACGCAAGCCGTCCAATTATGCAGCTCGAATAT------GTGTAT--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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............................................................................................................................................GCT---CAA-CTG--------TCCACTCTC..........................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AGGCCAATTGAAACGCAAGCCGTCC.................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TTGTTGGT-TTGTTTTTTAGG.......................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TTATGCAGCTCGAATAT------G.......1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TGCAGCTCGAATAT------GTGT....1822.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................................TGACCTTTTTGTTGGT-TTGT...............................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CTG--------TCCACTCTCTCCGATGTTT................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................CCAT---TTATATAACT----CTTCCAA----GTCAGC..........................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CCAATTGAAACGCAAGCCGTCCAATTA............................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GCT---CAA-CTG--------TCCACTCTCTCCGATGTT.................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TATGCAGCTCGAATAT------GTG.....1912.0020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TGCAACCAGCACAACGGAGCATCGAC..................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..........................................................................................................................................................................................................................................................................................CTC--TTGACCTTTTTGTTGGT-TTGTTT.............................................................2612.0020000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TCCAT---TTATATAACT----CTTCCAA----GTCA............................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TAGGCCAATTGAAACGCAAGCCGTCCA................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................GCT----AAGCT---CAA-CTG--------TCCACTCTCTC........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TGCAGCTCGAATAT------GTGTA...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AGCACAACGGAGCATCGACTCT...............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TGAAACGCAAGCCGTCCAA...............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................GACCTTTTTGTTGGT-TTGTTTT............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................................................................................................................................................................................................................................ACGCAAGCCGTCCAATTATGCAGCTCGA..................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................TG-GCAA--TCGGGAATCTCAA----CA--CCT--AATGC.....................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CT--T--TG-GCAA--TCGGGAATCTC.........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................CTCTCCGATGTTTCCAT---TTATATAACT----C..........................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTAGGCCAATTGAAACGCAAGCCGT...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................TGACCTTTTTGTTGGT-TTGTTTTTT..........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................CA--CCT--AATGCTG-TATT-TTGCTC--TTGA.................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TTATGCAGCTCGAATAT------GTGTA...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................A-CTG--------TCCACTCTCTCCGATGTTTCCAT---.........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TTCCAT---TTATATAACT----CTTCCAA----GTCAG...........................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................T----CTTCCAA----GTCAGCTCAAAC....................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CTGCAACCAGCACAACGGAGCATCGACTC................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................GTCAGCTCAAACCT--T--TG-GCAA--TCGGGAAA............................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AACCT--T--TG-GCAA--TCGGGAATCTCA........................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..................................TCCAT---CTTTGGCCAGCGTA---AGCGCC...................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TTGAAACGCAAGCCGTCCAATTATGC.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................GT-TTGTTTTTTAGGCCAATTGAAAC............................................2511.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TATGCAGCTCGAATAT------GT......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CAATTGAAACGCAAGCCGTCCAAT..............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................CCAATTATGCAGCTCGAATAT------GTGT....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................TCCAA----GTCAGCTCAAACCT--T--TG-GCA.......................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................G-GCAA--TCGGGAATCTCAA----CA--CCT--AT........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TTTTTAGGCCAATTGAAACGC..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................T-TTGTTTTTTAGGCCAATTGAAACGCAAGC......................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................G--------TCCACTCTCTCCGATGTTTCCAT---TT.......................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CATCTGCAACCAGCACAACGGAGCATC.....................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................AGCTCAAACCT--T--TG-GCAA--TCGGGAATC...........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CAGCTCAAACCT--T--TG-GCAA--TCGG................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TCCAATTATGCAGCTCGAATAT------GTGTAA--2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TTTTTGTTGGT-TTGTTTTTTAGGCC.....................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TTTTAGGCCAATTGAAACGCAAGCCG....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...GCATCTGCAACCAGCACAACGGAG.........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AGGCCAATTGAAACGCAAGC......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TCTACTAAGCT----A---AGCT----AAGCT---CAA-CTG--------T..................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGCGCATCTGCAACCAGCACAACGGAGCAT......................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TAACT----CTTCCAA----GTCAGCTC........................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TG-GCAA--TCGGGAATCTCAA----CA--CCT--A.........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................GTTTTTTAGGCCAATTGAAACGCAAGCCG....................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TG-GCAA--TCGGGAATCTCAA----CA--CCT--AATG......................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................TGAAACGCAAGCCGTCCAATTATG..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CTCCCTGCTGGGTCTTTGGT.......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AACCT--T--TG-GCAA--TCGGGAATCTCAA----CA--C..............................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................T-TTGTTTTTTAGGCCAATTGAAACGCA.........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TATATAACT----CTTCCAA----GTCAG...........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TG--------TCCACTCTCTCCGATGT..................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................GTCCAATTATGCAGCTCG...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CATCTGCAACCAGCACAACGGAG.........................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TTAGCTCCCTGCTGGGTCTTTGGTTTA---T................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TCTGCAACCAGCACAACGGAGCATCGA...................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................T--TG-GCAA--TCGGGAATCTCAA----CA--CCT--AAT.......................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CGCAAGCCGTCCAATTATGC.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
droEre2
CGCGCATCTGCAACCAGCACAATGGAGCCTCGACTCCAT---CCTTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCT----A---AGCT----AAGCT---CAA-CTG--------TCCACTCTCTCCGACGTTTCCGC---TTATGTAACT----CTTCCAA----GTCAGCTCTGAACT--C--TG-GCAA--TCGGGAATCTCAA----CA--CTT--AATGCTG-TATT-TTACTC--TCGAACTTCTTGTTGGT-TTGTT-TTTAGGCCAATTGAAACGCAAGCCGTCCAATTATGCAGCTCGAATAT------GTGTATCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................AGCT---CAA-CTG--------TCCACTCTCTCCGACGT..................................................................................................................................................................................................27119.001900000019
........................................................................................................................................................................................................................................................................................................TTGTTGGT-TTGTT-TTTAGGCCAATT.................................................25114.001400000014
............................................................................................................................................................................................................................................................................................................................................GCCGTCCAATTATGCAGCTCGAATAT------GTG.....29113.001300000013
......................TGGAGCCTCGACTCCAT---CCTTGGCC..................................................................................................................................................................................................................................................................................................................................25110.001000000010
................................................................................................................................................................................................................................................................................G-TATT-TTACTC--TCGAACTTCTTGTT.......................................................................2512.0022000000
...........................................................................................................................................................................................................................................................................................................................................AGCCGTCCAATTATGCAGCTCGAATA...............2611.0011000000
.........................AGCCTCGACTCCAT---CCTTGGCCA.................................................................................................................................................................................................................................................................................................................................2311.0011000000
.....................................................................................................................................................................................................................................................AATCTCAA----CA--CTT--AATGCT....................................................................................................1911.0011000000
....................................................................................................................................................................................................................................................................................................................................................ATTATGCAGCTCGAATAT------GTGTAT..2411.0010001000
................................................................................................................................................................................................................................................................................................................................................TCCAATTATGCAGCTCGAATAT------GTGT....2611.0011000000
.........................AGCCTCGACTCCAT---CCTTGGCCAG................................................................................................................................................................................................................................................................................................................................2411.0011000000
.................................................................ATCCTTAGCTCCCTGCTGGGTCTTTGGT.......................................................................................................................................................................................................................................................................................2811.0011000000
.........................................................................................................................T----A---AGCT----AAGCT---CAA-CTG--------TCCACTCT...........................................................................................................................................................................................................2511.0011000000
..........................................................................................................................................................................TCCGACGTTTCCGC---TTATGTAACT----C..........................................................................................................................................................................2511.0011000000
....................................................................................................................................................................................................................................................................................................CTTCTTGTTGGT-TTGTT-TTT..........................................................2011.0011000000
..............................................................................................................TTCTACTAAGCT----A---AGCT----AAGCT---CAA-CTG--------...................................................................................................................................................................................................................2811.0011000000
.......................................................................................................................................................................................................................AGCTCTGAACT--C--TG-GCAA--TCGGGAATCT..........................................................................................................................2811.0011000000
................................................................................................................................................................................................................................................................................G-TATT-TTACTC--TCGAACTTCTTGTTG......................................................................2611.0011000000
.........................................................................................................................................................................................................................................................................................ACTC--TCGAACTTCTTGTTG......................................................................1911.0011000000
......................................................................................................................................................................................................................................................................................................................................................TATGCAGCTCGAATAT------GTG.....1911.0011000000
.......................................................................................................................................................................................................................................................................................................................TTTAGGCCAATTGAAACGCAAGCC.....................................2411.0010100000
...........................................................................................................................................................................................TTATGTAACT----CTTCCAA----GTCAGCTC........................................................................................................................................................2511.0011000000
...................................................................................................................................................................................................................................................................................ATT-TTACTC--TCGAACTTCTTGTTG......................................................................2411.0011000000
...........................................................................................................................................AGCT---CAA-CTG--------TCCACTCTCTC........................................................................................................................................................................................................2111.0010000001
.........................AGCCTCGACTCCAT---CCTTGGCC..................................................................................................................................................................................................................................................................................................................................2211.0011000000
..............................................................................................................................................................................................................................................................................................................GT-TTGTT-TTTAGGCCAATTGAAACGC..........................................2611.0010000010
........................................................................................................................................................G--------TCCACTCTCTCCGACGTTTCCGC---TT.......................................................................................................................................................................................2611.0011000000
...............................................................................................................................................................................................................................................................................................................................................GTCCAATTATGCAGCTCGAATAT------G.......2411.0010000100
.....................................................................................................................................................................................................................TCAGCTCTGAACT--C--TG-GC........................................................................................................................................1820.5010000010
droYak3
CGCGCATCTGCAACCAGCACAATGGAGCCTCGACTCCAT---CCTTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCT----A---AGCT----AAGCT---CAA-CTG--------TCCACTCTCTCCGATGTTTCCGC---TTATATAACT----CTTCCAG----C-CAGCTCAGAACT--C--TG-GCCA--TCGGGAATCTCAA----CA--CTT--AATGCTG-TATT-TTACCC--TTGAACTTCTTGTTGGT-TTGTT-TTTAGGCCAATTGAAACGCAAGCCGTCCAATTATGCAGCTCGAATAT------GTGTATCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................TG-GCCA--TCGGGAATCTCAA----CA--CC.............................................................................................................2312.00200200000000
..........................................................................................GGTTTA---TCCGCT---CCTTCTACTA..............................................................................................................................................................................................................................................................2212.00220000000000
......................................................................................................................................................................................................................................................................................................TCTTGTTGGT-TTGTT-TTTAGGCC.....................................................2311.00100100000000
......................................................................................................................................................................................................................................................ATCTCAA----CA--CTT--AATGCTG-T.................................................................................................2011.00100000100000
................................................................................................................................................................................................................................................................................G-TATT-TTACCC--TTGAACTT.............................................................................1911.00101000000000
......TCTGCAACCAGCACAATGG...........................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...................................................................................................................................................................................................................................................................................................................................GAAACGCAAGCCGTCCAATTATGCA........................2511.00101000000000
.......................................................................................................................................................................................................................AGCTCAGAACT--C--TG-GCCA--TCGGGAATCTC.........................................................................................................................2911.00100000010000
........................................................................................................................................................................................................................GCTCAGAACT--C--TG-GCCA--TCGGGA..............................................................................................................................2311.00101000000000
.......................................................................................................................................................................................................................AGCTCAGAACT--C--TG-GCCA--TCGGGA..............................................................................................................................2411.00110000000000
..............CAGCACAATGGAGCCTCGACT.................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.........................................................................................................................................................................................................................................................................................................TGTTGGT-TTGTT-TTTAGGCC.....................................................2011.00100100000000
droEug1
CTCGCATCTGCAACCAGCACAATGGAGCCAACACTCCTT---CCTTGGCCAGCGTA---AGCGCCATCCTTAGCTCCTTGATCGGTCTTTGGTTTA---TCCGCT---TCTTCTACTAAGCT----A---AGCT----AAGCTTAACAA-CTG--------TCCACTGTCTTCGATTTCTCCAC-------ATAACT----CTTCCAA----CTCAGCTCAGACCT--C--TG-GCAA--TCGGGAATCTCAA----CA--CTT--TATGCTA-TGTT-TTACTC--TTGAATTTTTTATTGGTTTTGTT-TTTAGGCCAATTGAAACGCAAGCCGTCCAATTATCCAGCTCGATTAT------GTGTATCASizeHit CountTotal NormTotal
No Reads
droBia1
CCCGCATCTGCAACGCGCACAACGGAGCCTCCACCCCTT---CCCTGGCCAGCGTA---AGCGCCGTCCTTAGCTCCCTGCTGGGTCTTTGGTTTC---TCCGCC---TCCTCTGCTAGGCT----A---GGCT----GGGCT---CTA-TCC--------TCAACTGTCTCTGGCTTTTCCAA----CACCAAACT----CTTCCAA----CTCAGCTCAGACCT--C--TG-GCAAATTCGGGAATCTCAATCTCCA--CTTTAAATTCTA-TGCC-TTACTC--TCGA--TTTTTGTTGGT-TTGTT-TTTAGGCCAACTGAAACCCAAGCCGTCCAATTGTCCAGCTCG-ATAT------GTGTATCASizeHit CountTotal NormTotal
No Reads
droTak1
CCCGCATTTGCAACCAGCACAACGGAGCCTCCACTCCTT---CCTTGGCCAGCGTA---AGCGCCGTCCTTAGCTCCCTGCTGGGTCTTTGGTTTC---TACGCT---CCTTCTGCTAAGCC----A---ATCTCCACAATCT---CCA-CTC--------TTCACTGTCTCTT-----------------ACAACT----CTTCCAA----CTCAGCTCAGACCT--C--TG-GCCAATTCGGGAATCTCAT----CA--CTT--AATGCTT-TGAT-TTACTC--TTGAATTCATTGTTGGT-TTGT--TTTAGGCCAATTGAAACGCAAGCCGTCCAATTATCCAGCTCGAATAT------GTGTATCASizeHit CountTotal NormTotal
No Reads
droEle1
CCCGCATCTGCAACCAGCACAACGGAGCCTCCACATCTT---CCTTGGCCAGCGTA---AGCGCCATCCTTGGCTCCCTGCTCGGTCTTTGGTTTA---TCCGCT---CCTTCCACTAAGCTG---------------------------------------------TCTCTGATTTTCCCAC-------AAAACT----CTTTCAA----CTAAACACACACCT--C--TG-GCGA--TCGTGAATCTCAA----GA--TCT--TGTGCAT-TGTT-TTACTC--TTGAACTTTTTATTGGT-ATGTT-TTTAGGCCAATTGAAACGCAAGTCGTCCAATTATCCAGCTAGAATAT------GTGTATCASizeHit CountTotal NormTotal
No Reads
droRho1
CCCGCATCTGCAACCAGCACAATGGAGCC---ACTTCAT---CCTTGGCCAGCGTA---AGCGCCGTCCTTGGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCG---CCTTCTACTAAGCTG---------------------------------------------TCTCTGATTTTCCCAC-------AAAACT----CTTCCAA----CTATTCTCACAACT--C--TG-GCAA--TCGCGAATCTCAA----GA--TCT--TGTGCAT-TGTT-TTATTC--CTTAACTTTTTATTGGT-ATGCT-TTTAGGCCAATTGAAACTCAAGCCGTCCG------CAGCTAGAATAT------GTGTATCASizeHit CountTotal NormTotal
No Reads
droFic1
CCCGCATCTGCAACCAGCACAACGGAGCCACCACTGCGT---CTTTGGCCAGCGTA---AGCGCGATCCTTAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCT----A---AG------------------CTG--------CCAACTGTCTCTGAACTTTCCAC---A---AAAACT----CTTTCAA----CTCAGCTCAGAACT--C--TG-GCAA--TCGGGAATCTCAT----CA--CTT--AACGCAT-TGTT-TTACTC--TTGATTTTTTTGTTGGT-TTC-T-TTTAGGCCAATTGAAAGGCAAGCCGTCCAATTATCCAGCTAGAATAT------GTGTATCASizeHit CountTotal NormTotal
No Reads
droKik1
CGCACATCTGCACTGCCCACAACGGTGCCGCCGCTCCTT---CGATCACCAGCGTA---AGCGCCATCCTTGGCTCCCTGCTGGGTCTTTGGTCTATCATCCGCC---TCTTCCACTAAGCTG---------C-------------CAA-CTG--------TCAGCCGCCTTTGCTATCTCCCACACCAACCCAACTTCAACTTCCAA----CTCAGC-CAGACCTTTC--TGTGCAA--TCGGGAATCTCAA----CC--GTT--AATGCCT-TGTT-TTACCT--TACCACCTTTTGTTGGT-TTGTT-TTTAGGCCAATTGAAAGCCAAGCCGTCCA--------GATAGAATATGAATCACAATATCASizeHit CountTotal NormTotal
No Reads
droAna3
CAAGGATCTGCACTGCCCACAATGGAGCCTCTACCTCCTTTGGCCTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTGATGGGTCTTTGGGCTC---TCCGCT---ACCTCTTCTAAGCTG-------------------T---CAA-CTG--------TCAACCATACCTGCTATCTCCCA-------CAAACT----CCTCCAT----CTCAGCCCAGTTCG--C--TGTGCAT--TCGGGAACCTTAA----AA--GTT--TATTCCCTTTTT-TTACTC--TTGAACTTTTTGTTGGT-TTGCT-TTTAGGCCAATTAAAACACAATTTGTCCATCCAACCAGCCCTTAAAA------GTGTATTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................CT---ACCTCTTCTAAGCTG-------------------T---CAA-CT............................................................................................................................................................................................................................2312.002000002
.......................................................................................TTTGGGCTC---TCCGCT---ACCTCTTCTAAG............................................................................................................................................................................................................................................................2711.001000001
....................................................................................................................................................................................................................CTCAGCCCAGTTCG--C--TGTGC........................................................................................................................................2011.001010000
.....................................................................................................................AAGCTG-------------------T---CAA-CTG--------TCAACCATACC........................................................................................................................................................................................................2411.001100000
droBip1
CAAGGATCTGCACTGCCCACAATGGAGCCTCAACCTCCTTTGGCCTGGCCAGCGTA---AGCGCCATCCTTAGCTCCCTAATGGGTCTTTGGGCTC---TCCGCT---CCCTCTTCTAAGCTG-------------------T---CAA-CTG--------TCAACCATACCTGCTATCGCCCA-------CAAACT----CTTCCAC----CTCAGCCCAATTCG--C--TGTGCAT--TCGGGAACCTCAA----CA--GTT--TATTCGTTTTTA-ATACTT--TTGAACTTTTTGTTGGT-TTGCT-TTTAGGCCAATTAAAACACAATTCGTCCATCCATCCAGCTCTTAAAA------GTGCATTASizeHit CountTotal NormTotal
No Reads
dp5
CCAGAATCTGCGCTCAGCACAACGCCGCCGCCACCCCTA---GCCTGGCCAGCGTA---AGCGCCATCTTAAGCTCCCTGCTGGGTCTTTGGTTTA---TCCGCT---CCTTCTACTAAGCTG---------T-------------CAAGT-T-------TCCAACTGAATCTGAATCTG------------AA-TCTCAATCTTCAATTGCTTCCGCCCCAACTT--C--CGTGCAA--TGGGGAATCTCAA----TG--CCT--TATGATT-TGTT-TTTCTCTTTTGTTCTGTTTACTGGT-TTGCT-TCCAGGCCAATTGAAACCCAAGCCGTCCAATCGTCCAGCTCCAATATACAT--ATATATCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................T--C--CGTGCAA--TGGGGAATCTCAA----TG--CC.............................................................................................................2611.0010100000000
................................................................................................................................................................................................................................................................................................TGTTCTGTTTACTGGT-TTGCT-TCCA.........................................................2521.0020200000000
................................................................................................................................................................................................................................................................................................................................................TCCAATCGTCCAGCTCCAATATACAT--A.......2711.0010000000100
....................................................................................................................................................................................................................................................................................................................................................ATCGTCCAGCTCCAATATA.............1911.0010000010000
...............................................................................................................................................................................................................................................................................TT-TGTT-TTTCTCTTTTGTTCTGT............................................................................2321.0020000000020
..................................................................................................................................................................................................................................................................G--CCT--TATGATT-TGTT-TTTCTCTTT....................................................................................2411.0010000000100
................................................................................................................................................................................................................................................................................................TGTTCTGTTTACTGGT-TTGCT-TCCAGG.......................................................2720.5010100000000
......................................................................................................................................................................................................................................................................................................GTTTACTGGT-TTGCT-TCCAGGCCAATT.................................................2720.5010001000000
droPer2
CCAGAATCTGCGCTCAGCACAACGCCGCCGCCACCCCTA---GCCTGGCCAGCGTA---AGCGCCATCTTAAGCTCCCTGCTGGGTCTTTGGTCTA---TCCGCT---CCTTCTACTAAGCTG---------T-------------CAAGT-T-------TCCAACTGAATCTGAA-------------------TCTCAATCTTCAATTGCTTCCGCCCCAACTT--C--CGTGCAA--TGGGGAATCTCAA----TG--CCT--TATGATT-TGTT-TTTCTCTTTTGTTCTGCTTACTGGT-TTGCT-TCCAGGCCAATTGAAACCCAAGCCGTCCAATCGTCCAGCTCCAATAT------ATATATCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................GCCCCAACTT--C--CGTGCAA--TGGGGAATCT..........................................................................................................................2811.001010000
......................................................................................CTTTGGTCTA---TCCGCT---CCTTCTA.................................................................................................................................................................................................................................................................2311.001010000
.......................................................................................................................................................................................................AATCTTCAATTGCTTCCGCCCCAAC....................................................................................................................................................2511.001001000
..............................................................................................................................................................................................................................................................................................................................CAATTGAAACCCAAGCCGTCCAATCGT...........................2711.001010000
.............................................................................................................................................................................................................................................A--TGGGGAATCTCAA----TG--CC.............................................................................................................1811.001000010
droWil2
CTCGCATCTGTAGCCAGCATAATGCCGCC---GCTCCTG---GCTTGGCCAGCGTA---AGCGCCATCTTAAGCTCTCTATTGGGTCTTTGGTTTA---TCCGCT---ACTTTCTCTAAGCTG---------C---------------T-CTG--------TCCACTG------ATTTTCCC-------------------------------TCCACTCAGAGCTCTCAGAGTGCAA--CTATGAATCTCTT----AATTGTG--TATGTTGTTTGTTTTATT---TTATTCCATTTATTTTT-TTGCC-TTTAGGCTAAATGAAACTCATGCCGTCCGTATATCTACGCCGTATAT------CAGTCTCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....CATCTGTAGCCAGCATAATGCC..........................................................................................................................................................................................................................................................................................................................................................2212.00220000
.....................................................................................................................................................................................................................................................................................................................................................ATATCTACGCCGTATAT------CAGT....2112.00200110
.....................................................................................................................................................................................................................................................................................................................................................ATATCTACGCCGTATAT------CA......1911.00100010
...........................................................................................................................................................................................................................................................................................................................................TGCCGTCCGTATATCTACGCCGTATAT------CA......2911.00100100
................................................................................................................................................................................................................................................................................................................................AATGAAACTCATGCCGTCCGT...............................2111.00100100
.................................................................................................................................................................................................................................................................................................................TTGCC-TTTAGGCTAAATGAAACTC..........................................2411.00110000
.................................................................................................................................................................................................................................................................................................................................ATGAAACTCATGCCGTCCGT...............................2011.00100100
..............................................................................................................TTTCTCTAAGCTG---------C---------------T-CTG--------TCCA...............................................................................................................................................................................................................2211.00100001
.................................................................................................................................................................................................................................................TATGAATCTCTT----AATTGTG--TATGT.....................................................................................................2411.00100100
.......................................................................................................................................................................................................................CACTCAGAGCTCTCAGGT...........................................................................................................................................1830.33100010
droVir3
CACGCATCTGTGCCCAGCACAACGGCGCATCGAGT---------CTGGTTGGTGCC---AGCGCCCTTCTGAGCACCCTCTTGGGCATCTGGTTCG---TACGCC---AGCTTTACTAAGTGCC--T---GGCC----AAGCC---TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................AGT---------CTGGTTGGTGCC---AGCGCCCTTC...............................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000002
.......CTGTGCCCAGCACAACGGCGCATC.....................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000100000000000000000000000000000000000000000000000
...............................GAGT---------CTGGTTGGTGCC---AGCGCC...................................................................................................................................................................................................................................................................................................................2211.001000000000010000000000000000000000000000000000000000000000000000
...................CAACGGCGCATCGAGT---------CTGGTTGGT...............................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.........................CGCATCGAGT---------CTGGTTGGTGCC---A........................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000100000000000000000000000
.....................................................................................................................AAGTGCC--T---GGCC----AAGCC---T.................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AAGTGCC--T---GGCC----AAGCC---TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CGCC---AGCTTTACTAAGTGCC--T---..................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
............................ATCGAGT---------CTGGTTGGTGCC---AGC......................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................TTTACTAAGTGCC--T---GGCC----AAGC......................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
...............................................................................CTTGGGCATCTGGTTCG---TACGCC---AGCT....................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.....ATCTGTGCCCAGCACAACGGCGC........................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
.............................TCGAGT---------CTGGTTGGTGCC---.........................................................................................................................................................................................................................................................................................................................1811.001000000000000000000001000000000000000000000000000000000000000000
............................ATCGAGT---------CTGGTTGGTGCC---.........................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
.................................................................CTTCTGAGCACCCTCTTGGGC..............................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
................................................................CCTTCTGAGCACCCTCTTGGG...............................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................TGGGCATCTGGTTCG---TAC..............................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000001000000000000000000000000000
...GCATCTGTGCCCAGCACAACGGCGCATC.....................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000100000000000000000000000000000000000000000000000
.................................................................................TGGGCATCTGGTTCG---TACGCC---........................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
droMoj3
CCCGCATCTGCGCCCAACATAACGGCGCCATGGGT---------CTCGTTGGCACT---GGCTCCCTTCTCAGCGCCATCTTGGGCATCTGGTTCA---TGCGTCAGCTTTTCAACTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................GGGT---------CTCGTTGGCACT---GGCTCCC..................................................................................................................................................................................................................................................................................................................2311.001000010
...............................................................................................A---TGCGTCAGCTTTTCAACTAA.............................................................................................................................................................................................................................................................2111.001000010
..............................TGGGT---------CTCGTTGGCACT---GGC......................................................................................................................................................................................................................................................................................................................2011.001000001
.......................GGCGCCATGGGT---------CTCGTTGGC...............................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
CACGCATCTGTTCCGAGCATAACGGCGCATCGGGTCT---------GGTTGGTGCCGGCAGTGCCCTTTTGGGCTCCCTGCTGGGTCTGTGGTTCC---TGCGCT---ACCTTTACTAAGTGGGCTAAGTGGCT----AAGCCT--TAA-ATGTTACATTT-------------------ATAA---TTGCATTATT----CT-------------------------G--CA-GTCA--CTTTGAATCTCTA----CA--ATT--TGTATAT-TG------CCC--T---------------------T-TCCGATCCATCTGAAACTCAAACCGTCCAAT------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................GGGCTCCCTGCTGGGTCTGTGGT.......................................................................................................................................................................................................................................................................................2311.00110
............................ATCGGGTCT---------GGTTGGTGCC............................................................................................................................................................................................................................................................................................................................1911.00110
................................................................................CTGGGTCTGTGGTTCC---TGCGCT---ACC.....................................................................................................................................................................................................................................................................2511.00110
..........................GCATCGGGTCT---------GGTTGGT...............................................................................................................................................................................................................................................................................................................................1811.00110

Generated: 05/18/2015 at 01:20 PM