dsi_17533

five_prime_UTR [3l_16534765_16534786_+]; CDS [3l_16534787_16534882_+]; exon [3l_16534765_16534882_+]; intron [3l_16533139_16534764_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGACGTAAAAACTTCTAAGCTATCTTATCGCGTTTACAGCAGCCGAGGGTCAGGAGTTCGGTGTTTAGGGGGTGGCACTGGCACTATCTTTTACGTGGCTTGTTTGTCAACAAAGCCGCCATCGATTAATCAGTTGGAAGTGATATAATAGTTGGCTGATAAGATCTCCACTAAGATTGTCTCTTGCCTCTTTCTTTCAGTTCTATTTTGTAAAGCTACAAAATGCATAGAGCCCACACAGCCTTCAGCC ************************************************................((((((.((((..((((..(((((....((((....(((((((........((((...((((((((........)))).))))...)))))))))))....)))).)))))))))...)))).)))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M053 female body	M023 head	M025 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries
........................................AGGCGAGGGTCGGGAGTTC...............................................................................................................................................................................................	19	2	1	2.00	2	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TATTTTGTAAAGCTACAAAAT..........................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................AGACTGTCTCTTGCCT.............................................................	16	1	1	1.00	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................ATAATAGTTGGCTGATAAGATCTCC.................................................................................	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................AAAGCTACAAAATGCATAGA...................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................GATCTCCACTAAGATTGTCTCTTG................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................AAAATGCATAGAGCCC...............	16	0	1	1.00	1	0	0	0	0	1	0	0	0	0
.......................................AAGGCGAGGGTCGGGAGTTC...............................................................................................................................................................................................	20	3	7	0.71	5	5	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGAGACTGTCTCTTGCCT.............................................................	18	2	2	0.50	1	1	0	0	0	0	0	0	0	0
..........................................CCGAGGGTCATCAGTTCG..............................................................................................................................................................................................	18	2	2	0.50	1	0	0	1	0	0	0	0	0	0
............................................GAGGGTCGGGAGTTC...............................................................................................................................................................................................	15	1	6	0.50	3	3	0	0	0	0	0	0	0	0
.........................................GGCGAGGGTCGGGAGTTC...............................................................................................................................................................................................	18	2	3	0.33	1	1	0	0	0	0	0	0	0	0
..............................................................................TGGCACTCTGTTTTACGTGGA.......................................................................................................................................................	21	3	4	0.25	1	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................GTTCTATCGTGTAAAGCCA................................	19	3	6	0.17	1	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................TGAGACTGTCTCTTGCC..............................................................	17	2	6	0.17	1	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................AATCGGCTGATAAGATCTCAA................................................................................	21	3	6	0.17	1	1	0	0	0	0	0	0	0	0
.........................................GCGGAGGGTCAAGAGTTCGA.............................................................................................................................................................................................	20	3	8	0.13	1	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GTTCTATCGGGTAAAGCTA................................	19	3	12	0.08	1	0	0	0	0	0	0	0	1	0
..............................................GGGTCAGGAGTTCGA.............................................................................................................................................................................................	15	1	12	0.08	1	0	0	0	0	0	1	0	0	0
.............................................AGGGTCAGGGGTTCG..............................................................................................................................................................................................	15	1	14	0.07	1	1	0	0	0	0	0	0	0	0
................................................................................................................................ACCAGTTGGAAGTGA...........................................................................................................	15	1	15	0.07	1	0	0	0	0	0	0	0	0	1

ACTGCATTTTTGAAGATTCGATAGAATAGCGCAAATGTCGTCGGCTCCCAGTCCTCAAGCCACAAATCCCCCACCGTGACCGTGATAGAAAATGCACCGAACAAACAGTTGTTTCGGCGGTAGCTAATTAGTCAACCTTCACTATATTATCAACCGACTATTCTAGAGGTGATTCTAACAGAGAACGGAGAAAGAAAGTCAAGATAAAACATTTCGATGTTTTACGTATCTCGGGTGTGTCGGAAGTCGG ************************************************................((((((.((((..((((..(((((....((((....(((((((........((((...((((((((........)))).))))...)))))))))))....)))).)))))))))...)))).)))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M024 male body
...........................AGCGCAGATGTCGTGGGTT............................................................................................................................................................................................................	19	3	10	0.10	1	1	0
.................................................................................................................CCGGCGGTAGCTTCTTAGT......................................................................................................................	19	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:16534565-16534814 +	dsi_17533	TGACGTA--------AA----AACTTCTAAG---------------C--TATCTTATCGCG-TTTA--CAGCAGCCGA--GGGTCAGGAGTTCGGTGTT---T--A--GGGGGTGGCACTGGCACTATCTTTTACGTG---GCTTGTTTGTCAACAAAG----------CCGC---CATCGATTAATCA-GTTGG----AAGTGATAT-AATAGTT---------GGCTGATAAGATCTCC------ACTA-----AGATTGTCTCT--------T--GCCTC---TTT-CTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC
droSec2	scaffold_0:9013407-9013656 +		TGACGTA--------AA----AACTTCTAAG---------------C--TATCTTATCTCG-TTTA--CAGCAGCCGA--GGGTCAGGAGTTCGGTGTT---T--A--GGGGGTGGCACTGGCACTATCTTTTACGTG---GCTTGTTTGTCAACAAAG----------CCGC---CATCGATTAATCA-GTTGG----AAGTGATAT-AATAGTT---------GGCTGATAAGGTCTCC------ACTA-----AGATTGTCTAT--------T--GCCTC---TTT-CTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC
dm3	chr3L:16952006-16952248 +		TGACGTA--------AA----AACTTCTAGG---------------C--TATCTTATCGCG-TTTA--CAGCAGCCGA--GGGTCAGGAGTTCGGTGTT---T--A--GGGGGTGGCACTGGCACTATCTTTTACGTG---GCTTGTTTGTCAACAAAG----------CCGC---CATCGATTAATCA-GTTGG----AAGTGATAT-AATAGTG---------GGCTGATAAGATCTTC------ACTA-----AGATTGTCT-----------------C---TTT-CTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC
droEre2	scaffold_4784:16890525-16890768 -		TGACGTA--------AA----AGCTGTGAAG---------------C--TATCTTATCGCG-TTTA--CAGCAGCCGA--GGGTCAGGAGTTCGGTGTT---T--A--GGGGGTG------GTACTATCTCTTACGTG---CCTTGTTTGTCAACAAAG----------CCGC---CATTGATTAATCA-GTTTG----AAGTGGTAT-AATAGTT---------GGCTGATAAGATCCGC------ACTA-----AGATTGTCTCT--------T--GCCCA---TTT-CTTTCAGTTATATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC
droYak3	3L:17123180-17123420 -		TGACGTA--------AA----AACTTCTAAG---------------C--TATCTTATCGCG-TTTA--CAGCAGCCGA--GGGTCAGGAGTTGGGTGTT---G--A--GGGGGTG------GCATTATCTCTTACGTG---GCTTGTTTGTCAACAAAG----------CCGC---CATCGATTAATCA-GTTGC----AAGTGATAC-AATAGTT------------TGATAAGATCCCC------ACTA-----AGATTTTCTCT--------T--GTCTA---TTT-CTTTCAGTTATATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC
droEug1	scf7180000409711:386644-386891 -		TGACGTA--------AA----AACTTCTGGG---------------CTATATCTTATCGCACTTTA--CAGCAGCCGA--GGGTCAGGAGTTCGGTGTT---T--A--GCGGGGGGG----TTGCTATCTTCTACGTG---GCTTGTTTGTCAACAAAG----------GAGC---GATCGATTAATCA-GTCGC----GAGTGATAT-AATAGTC---------CAGTGATAAGATCCCA------ACTA----AAGATTGTCTCT--------T-----CA---TTTCGTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCACACACAGCCTTCAGCC
droBia1	scf7180000302428:3160393-3160634 -		TGACGTA--------AA----AACTTCTAGG---------------C--TATCTTATCGCT-CTTA--CAGCAGCCGA--GGGTCAGGGGTGCGGTGTT---C--AGAGGGGGTG------TTGCTACCAGCC--------ACTTGTTTGTCAACAAAA----------GCGC---CATCGATTAATCA-GTCGC----AAGTGATAT-AATGCTC---------CCCCGATAAGATCCTC------ACTA----AAGATTGTCT----------T--CCCTC--GTTCCGTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCACACACAGCCTTCAGCC
droTak1	scf7180000415352:410025-410258 -		TGACGTA--------AA----AACTTCTAGG---------------C--TATCTTATCGCT-CTTA--CAGCAGCCGA--GGGTCAGGGGTTCGGTGTT---T--A--GGGGGTG------G--------------TG---ACTTGTTTGTCAACAAAA----------GCAC---CATCGATTAATCA-GTCGC----AAGTGATAT-AATAGTC---------CGCTGATAAGATCCCC------ACTA----AAGATTGTCTGTCTCTCC-------TCC---T-TCGTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC
droEle1	scf7180000491255:3387252-3387506 +		TGACGTA--------AA----AACTTCTAGG---------------C--TATCTAATCGCA-CTTACACAGCAGCCGC--GGGTCAGGGGATCGGTGTT---T--A--GTGGGTG------GTGCTATCTTCTACGTG---GCTTGTTTGTCAACAAAG----------GCGC---CGTCGATTAATCA-GTAGC----TAGTGATAT-AATAGTC---------CGCTGATAAGATCGCC------ACTA----AAGATTGTCTCT----CCGTTTTGTTTC--GTTTCATTTTAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCACACACAGCCTTCAGTC
droRho1	scf7180000779902:119443-119685 -		TGACGTA--------AA----AACTTCTAGG---------------C--TATCTTATCGCA-TTTA--CAGCAGCCCG--GGGTCAGGGGTTCGGTGTT---T--A--GGGGGTG------GTGCTATCTTCTACGTG---GCTTGTTTGTCAACAAAA----------GCGC---CATCGATTAATCA-GTCGC----AAGTGATAT-AATAGTT---------CGCTGATAAGATCCCC------ACTA----AAGATTGTCTCT--------C-----CA---TTCCGTTTCAGTTATATTTTGTAAAGCT--ACAAAATGCATAGAGCACACACAGCCTTTAGTC
droFic1	scf7180000454113:3657223-3657478 -		TGACGTA--------AA----GGTTTCTGGG---------------C--TATCTTATCGCC-CTTA--CAGCAGCCGA--GGGTCAGGGGTTCGTTGTT---TTTCGAGGGGGCG------GTGCTATCTTCTGCGTTTCTACTTGTTTGTCAACAAAA----------GCCC---CATCGATTAATCA-GTCGC----GAGTGATAT-AATAGTT---------CGCTGATTAGATCTCC------ACTA----AAGATTGTCTCT--------TTCGCTTC--GTTTTGTTTCAGTTATATTTTGTAAAGCT--ACAAAATGCATAGAGCACACACAGCCTTCAGCC
droKik1	scf7180000302486:789607-789834 +		TGACGTA--------AA----GACTTCTGGG--------------TCT-AATCTAATCGGT-TTTA--CAGCAGCCGAGAGGGTCAGG------TTGT----T--A--GGGGGCGGGT---GTGCTATCTCCTACGTG---GCTTGTTTGTCAACAAAG-----------CGC---CATCGATTAATCA-CTA------------------------------------GATAAGATCCCCAAACCCACTAACTGAAG----TCCCT----CT--T----CCT---TTG-CTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC
droAna3	scaffold_13337:13670147-13670390 -		TGACGTA--------CATGGCAACTTCTGGG-ACGGCG---GTGGTC--TATCTAATCGCA-TTTA--CAGCAGCCGT--GGGTCAGG-------------------------------------------------------TTGTTTGTCAACAAACAGCTCTCCTCCCCC---CATCAATTAATCA-GAACCGAG-TAGTGATAT-AATAGAGCACTGATAACGCTGATAAGATGTCG------TCTAATTAA---TAGTTCCT----CCT-T-----CT---CTA-TTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTTAGCC
droBip1	scf7180000395832:611426-611658 -		TGACGTA--------AA----GACTTCCAAG-ACGACGACGACGCTC--TATCTAATCTCG-TTTA--CAGCAGCCGT--GGGTCAGGGG------GTT---T-CCGAGGG-GCG------T--------------CT---GGTTGTTTGTCAACAAAG----------C-ACCCTCATCAATTAATCGAAAACCGACCGAGTGATAT-AATAGTG---------CACTGATAAGATGCC-------AC--------------CT----------T----CTC---CTT-ATTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTTAGCC
dp5	XR_group8:4773908-4774172 +		TGACGTACTCGTACAAA----AACTACTCTGCGGGGCAACCTAAC-CT-TATCTTATCAGA-CTTA--CAGCAGCCA-----GACAGAGGCTGATTGCTGATA--C--GGGGGTGGG-C---TG----CTTCTACGTG---CCTTGTTTGTCAACAAATAAAGGCAACAAGGC---AATCGATTAATCA-GTTGG----GAA--ATATCTGTATTT------------TTAT---------------ATTA----ATGATTCCCT----------TCTACTCACT-CCA-TTTTCAGTTATATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGTC
droPer2	scaffold_29:1016770-1016776 +		TGACGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004511:1290438-1290501 +		TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---CAT-TTTCCAGTTCAATTTTGTAAAGCC--TCAAAATGCATAGAGCACATACAGCCTTCAGTT
droVir3	scaffold_13049:10212322-10212388 -		TTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC---GCT-TTTGCAGTTATATTTTGTAAAGCT--ACAAAATGCATAGAGCACACACGGCCTTTAGTC
droMoj3	scaffold_6680:10585083-10585140 +		T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCAGTTATATTTTGTAAAGCC--ACAAAATGCATAGAGCACACACGGCCTTTAGTC
droGri2	scaffold_15110:9030192-9030257 +		C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC---TCA-CTTTCAGTTCTATTTTGTAAAGTAAAACAAAATGCATAGAGCACACACGGCCTTTAGTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGACGTA--------AA----AACTTCTAAG---------------C--TATCTTATCGCG-TTTA--CAGCAGCCGA--GGGTCAGGAGTTCGGTGTT---T--A--GGGGGTGGCACTGGCACTATCTTTTACGTG---GCTTGTTTGTCAACAAAG----------CCGC---CATCGATTAATCA-GTTGG----AAGTGATAT-AATAGTT---------GGCTGATAAGATCTCC------ACTA-----AGATTGTCTCT--------T--GCCTC---TTT-CTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................................................TATTTTGTAAAGCT--ACAAAAT..........................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AT-AATAGTT---------GGCTGATAAGATCTCC------......................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAAGCT--ACAAAATGCATAGA...................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................GATCTCC------ACTA-----AGATTGTCTCT--------T--G......................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AAAATGCATAGAGCCC...............	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................GGGTCAGGAGTTCGA..............................................................................................................................................................................................................................................................	15	12	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

TGACGTA--------AA----AACTTCTAAG---------------C--TATCTTATCTCG-TTTA--CAGCAGCCGA--GGGTCAGGAGTTCGGTGTT---T--A--GGGGGTGGCACTGGCACTATCTTTTACGTG---GCTTGTTTGTCAACAAAG----------CCGC---CATCGATTAATCA-GTTGG----AAGTGATAT-AATAGTT---------GGCTGATAAGGTCTCC------ACTA-----AGATTGTCTAT--------T--GCCTC---TTT-CTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACACAGC........	21	1	2.00	2	0	1	1	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGC........	20	1	2.00	2	0	0	2	0
...................................................................................................................................................TTGTCAACAAAG----------CCGC---CATCGATT.....................................................................................................................................................................	24	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................................AAAGCT--ACAAAATGCATAGAGC.................	22	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................................AGCT--ACAAAATGCATAGAGCCCA..............	23	1	1.00	1	0	1	0	0
............................................................................................CGGTGTT---T--A--GGGGGTGGCA.......................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................................GTTCTATTTTGTAAAGCT--AC...............................	20	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................ATTTTGTAAAGCT--ACAAA............................	18	1	1.00	1	0	0	1	0
...........................................................................CGA--GGGTCAGGAGTTCGGT.............................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................ATAGAGCCCACACAGCCTTCAGC.	23	1	1.00	1	0	1	0	0
......................................................................................................T--A--GGGGGTGGCACTGGCACTA..............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACACAGCC.......	22	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................................................CT--ACAAAATGCATAGAGCCCACACAGC........	27	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................TTCTATTTTGTAAAGCT--ACA..............................	20	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACAC...........	18	1	1.00	1	0	0	1	0
..................................................................................GTCAGGAGTTCGGTGTT---T--A--GGG..............................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACACAGCCT......	24	1	1.00	1	1	0	0	0
...............................................................TTA--CAGCAGCCGA--GGGTCAGGA....................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCCCACACAGC........	19	1	1.00	1	0	0	1	0
.............................................................................................................................................................AG----------CCGC---CATCGATTAATCA-GTTG...........................................................................................................................................................	23	1	1.00	1	0	0	1	0

dm3

TGACGTA--------AA----AACTTCTAGG---------------C--TATCTTATCGCG-TTTA--CAGCAGCCGA--GGGTCAGGAGTTCGGTGTT---T--A--GGGGGTGGCACTGGCACTATCTTTTACGTG---GCTTGTTTGTCAACAAAG----------CCGC---CATCGATTAATCA-GTTGG----AAGTGATAT-AATAGTG---------GGCTGATAAGATCTTC------ACTA-----AGATTGTCT-----------------C---TTT-CTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................AGCCCACACAGCCTTCAGCC	20	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACACA..........	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GTTGG----AAGTGATAT-AATAGTG---------............................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACAC...........	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................ACAAAATGCATAGAGCCCACAC...........	22	1	4.00	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGCC.......	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................................................................................................CAAAATGCATAGAGCCCACACAGC........	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................GTG---------GGCTGATAAGATCTTA------......................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACACAGCCT......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TTT-CTTTCAGTTCTATTTTGT.........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCCCACACAGCCTTC....	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................T--ACAAAATGCATAGAGCC................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................A--GGGGGTGGCACTGGCAC................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TGACGTA--------AA----AGCTGTGAAG---------------C--TATCTTATCGCG-TTTA--CAGCAGCCGA--GGGTCAGGAGTTCGGTGTT---T--A--GGGGGTG------GTACTATCTCTTACGTG---CCTTGTTTGTCAACAAAG----------CCGC---CATTGATTAATCA-GTTTG----AAGTGGTAT-AATAGTT---------GGCTGATAAGATCCGC------ACTA-----AGATTGTCTCT--------T--GCCCA---TTT-CTTTCAGTTATATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGC........	20	1	2.00	2	0	0	0	0	2	0	0
....................................................................................................................................................................................................................................................................................................................AAAGCT--ACAAAATGCATAGAGCCCACAC...........	28	1	2.00	2	0	0	0	0	2	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACAC...........	19	1	2.00	2	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACACAGCC.......	23	1	2.00	2	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACACAGCCTTCA...	26	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATAGAGCCCACACAGCCTTCAGCC	24	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAGCCCACACAGCCTTCAGCC	23	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGCCTTCAGC.	27	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GCATAGAGCCCACACAGCCT......	20	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................TATATTTTGTAAAGCT--ACA..............................	19	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TTTGTAAAGCT--ACAAAATGCATA.....................	23	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATAGAGCCCACACAGCCTTCAG..	22	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACACA..........	20	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................GTAAAGCT--ACAAAATGCATAGAGC.................	24	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGCC.......	21	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGCCTTC....	24	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CATAGAGCCCACACAGCCTTCAGC.	24	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CT--ACAAAATGCATAGAGCCCACAC...........	24	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGCCTTCA...	25	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCCCACACAGCCTTCA...	24	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATAGAGCCCACACAGCCTTCA...	21	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAAAATGCATAGAGCCCACA............	20	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TGTAAAGCT--ACAAAATGCATAGA...................	23	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACACAGC........	21	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................CT--ACAAAATGCATAGAGCCCACA............	23	1	1.00	1	0	0	0	0	1	0	0

droYak3

TGACGTA--------AA----AACTTCTAAG---------------C--TATCTTATCGCG-TTTA--CAGCAGCCGA--GGGTCAGGAGTTGGGTGTT---G--A--GGGGGTG------GCATTATCTCTTACGTG---GCTTGTTTGTCAACAAAG----------CCGC---CATCGATTAATCA-GTTGC----AAGTGATAC-AATAGTT------------TGATAAGATCCCC------ACTA-----AGATTTTCTCT--------T--GTCTA---TTT-CTTTCAGTTATATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................AAAGCT--ACAAAATGCATAGAGC.................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACACAGC........	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GATTTTCTCT--------T--GTCTA---TTT-CTTTCAG....................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................ACAAAATGCATAGAGCCCAC.............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACACAGCCTTC....	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGCCTTCAGC.	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAGCCCACACAGCCTTCA...	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAAGCT--ACAAAATGCATAGAGCCC...............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAAGCT--ACAAAATGCATAGAGCCCACAC...........	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AAAATGCATAGAGCCCACACAGCCTTCAG..	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TGTAAAGCT--ACAAAATGCATAGAGCC................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACACA..........	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGC........	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TTGTAAAGCT--ACAAAATGC........................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAAGCT--ACAAAATGCATAGAGCCCAC.............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACACAGC........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACACA..........	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GCATAGAGCCCACACAGCCTTCAGCC	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AAAATGCATAGAGCCCACACAGC........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................T--ACAAAATGCATAGAGCCCACA............	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................GTGATAC-AATAGTT------------TGATAA...................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................AGGAGTTGGGTGTT---G--A--GGGGGT...........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................TATTTTGTAAAGCT--ACAAA............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGCCTTCAGCC	28	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCCCACACAGCC.......	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TGACGTA--------AA----AACTTCTGGG---------------CTATATCTTATCGCACTTTA--CAGCAGCCGA--GGGTCAGGAGTTCGGTGTT---T--A--GCGGGGGGG----TTGCTATCTTCTACGTG---GCTTGTTTGTCAACAAAG----------GAGC---GATCGATTAATCA-GTCGC----GAGTGATAT-AATAGTC---------CAGTGATAAGATCCCA------ACTA----AAGATTGTCTCT--------T-----CA---TTTCGTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCACACACAGCCTTCAGCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGACGTA--------AA----AACTTCTAGG---------------C--TATCTTATCGCT-CTTA--CAGCAGCCGA--GGGTCAGGGGTGCGGTGTT---C--AGAGGGGGTG------TTGCTACCAGCC--------ACTTGTTTGTCAACAAAA----------GCGC---CATCGATTAATCA-GTCGC----AAGTGATAT-AATGCTC---------CCCCGATAAGATCCTC------ACTA----AAGATTGTCT----------T--CCCTC--GTTCCGTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCACACACAGCCTTCAGCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGACGTA--------AA----AACTTCTAGG---------------C--TATCTTATCGCT-CTTA--CAGCAGCCGA--GGGTCAGGGGTTCGGTGTT---T--A--GGGGGTG------G--------------TG---ACTTGTTTGTCAACAAAA----------GCAC---CATCGATTAATCA-GTCGC----AAGTGATAT-AATAGTC---------CGCTGATAAGATCCCC------ACTA----AAGATTGTCTGTCTCTCC-------TCC---T-TCGTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGACGTA--------AA----AACTTCTAGG---------------C--TATCTAATCGCA-CTTACACAGCAGCCGC--GGGTCAGGGGATCGGTGTT---T--A--GTGGGTG------GTGCTATCTTCTACGTG---GCTTGTTTGTCAACAAAG----------GCGC---CGTCGATTAATCA-GTAGC----TAGTGATAT-AATAGTC---------CGCTGATAAGATCGCC------ACTA----AAGATTGTCTCT----CCGTTTTGTTTC--GTTTCATTTTAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCACACACAGCCTTCAGTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGACGTA--------AA----AACTTCTAGG---------------C--TATCTTATCGCA-TTTA--CAGCAGCCCG--GGGTCAGGGGTTCGGTGTT---T--A--GGGGGTG------GTGCTATCTTCTACGTG---GCTTGTTTGTCAACAAAA----------GCGC---CATCGATTAATCA-GTCGC----AAGTGATAT-AATAGTT---------CGCTGATAAGATCCCC------ACTA----AAGATTGTCTCT--------C-----CA---TTCCGTTTCAGTTATATTTTGTAAAGCT--ACAAAATGCATAGAGCACACACAGCCTTTAGTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGACGTA--------AA----GGTTTCTGGG---------------C--TATCTTATCGCC-CTTA--CAGCAGCCGA--GGGTCAGGGGTTCGTTGTT---TTTCGAGGGGGCG------GTGCTATCTTCTGCGTTTCTACTTGTTTGTCAACAAAA----------GCCC---CATCGATTAATCA-GTCGC----GAGTGATAT-AATAGTT---------CGCTGATTAGATCTCC------ACTA----AAGATTGTCTCT--------TTCGCTTC--GTTTTGTTTCAGTTATATTTTGTAAAGCT--ACAAAATGCATAGAGCACACACAGCCTTCAGCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGACGTA--------AA----GACTTCTGGG--------------TCT-AATCTAATCGGT-TTTA--CAGCAGCCGAGAGGGTCAGG------TTGT----T--A--GGGGGCGGGT---GTGCTATCTCCTACGTG---GCTTGTTTGTCAACAAAG-----------CGC---CATCGATTAATCA-CTA------------------------------------GATAAGATCCCCAAACCCACTAACTGAAG----TCCCT----CT--T----CCT---TTG-CTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGCC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGACGTA--------CATGGCAACTTCTGGG-ACGGCG---GTGGTC--TATCTAATCGCA-TTTA--CAGCAGCCGT--GGGTCAGG-------------------------------------------------------TTGTTTGTCAACAAACAGCTCTCCTCCCCC---CATCAATTAATCA-GAACCGAG-TAGTGATAT-AATAGAGCACTGATAACGCTGATAAGATGTCG------TCTAATTAA---TAGTTCCT----CCT-T-----CT---CTA-TTTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTTAGCC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................................GCATAGAGCCCACACAGCCT......	20	1	4.00	4	2	0	0	0	0	2
............................................................................................................................................................................................................................................................................................................................ACAAAATGCATAGAGCCCACACAGCC.......	26	1	3.00	3	3	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGC........	20	1	2.00	2	0	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................TGTAAAGCT--ACAAAATGCATAGAGCC................	26	1	2.00	2	0	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACACAGCCTTTAGC.	29	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCCCACACAGCCT......	21	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACACAGC........	22	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................AAAATGCATAGAGCCCACAC...........	20	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACACA..........	19	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................ACAAAATGCATAGAGCCCACC............	21	1	1.00	1	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................GCATAGAGCCCACACAGCC.......	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AAAATGCATAGAGCCCACACAGC........	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAAAATGCATAGAGCCCACA............	20	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCCCACACAGCC.......	20	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................ATAGAGCCCACACAGCCTTT....	20	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................CT--ACAAAATGCATAGAGCCCA..............	21	1	1.00	1	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................ACAAAATGCATAGAGCCCACAC...........	22	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACACAGCCTTTA...	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGCCTTTA...	25	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................GTAAAGCT--ACAAAATGCATAGAGC.................	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CT--ACAAAATGCATAGAGCCCACACAGC........	27	1	1.00	1	0	0	0	0	0	1

droBip1

TGACGTA--------AA----GACTTCCAAG-ACGACGACGACGCTC--TATCTAATCTCG-TTTA--CAGCAGCCGT--GGGTCAGGGG------GTT---T-CCGAGGG-GCG------T--------------CT---GGTTGTTTGTCAACAAAG----------C-ACCCTCATCAATTAATCGAAAACCGACCGAGTGATAT-AATAGTG---------CACTGATAAGATGCC-------AC--------------CT----------T----CTC---CTT-ATTTCAGTTCTATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTTAGCC	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGACGTACTCGTACAAA----AACTACTCTGCGGGGCAACCTAAC-CT-TATCTTATCAGA-CTTA--CAGCAGCCA-----GACAGAGGCTGATTGCTGATA--C--GGGGGTGGG-C---TG----CTTCTACGTG---CCTTGTTTGTCAACAAATAAAGGCAACAAGGC---AATCGATTAATCA-GTTGG----GAA--ATATCTGTATTT------------TTAT---------------ATTA----ATGATTCCCT----------TCTACTCACT-CCA-TTTTCAGTTATATTTTGTAAAGCT--ACAAAATGCATAGAGCCCACACAGCCTTCAGTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGC........	20	1	3.00	3	0	2	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACACAGCCTTCA...	26	1	2.00	2	0	1	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACACAGCCTTC....	25	1	2.00	2	0	1	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GAGCCCACACAGCCTTCAGTC	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACACAGC........	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATAGAGCCCACACAGCCTTCA...	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAGCCCACACAGCCTTCAG..	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................AAAGCT--ACAAAATGCATAGAGCC................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................GTAAAGCT--ACAAAATGCATAGAGC.................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CATAGAGCCCACACAGCCT......	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................T--ACAAAATGCATAGAGCCCACACAGC........	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................GTAAAGCT--ACAAAATGCATAGAGCCC...............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCCCACACAGCCTTC....	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CT--ACAAAATGCATAGAGCCCACAC...........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GCATAGAGCCCACACAGCC.......	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................T--ACAAAATGCATAGAGCCCAC.............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGCC.......	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................ACAAAATGCATAGAGCCCACACAGCCTT.....	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGAGCCCACACAGCCTTCA...	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACAC...........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACACAGCCT......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCCCACACAGCCTT.....	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCCCACACAGCCTT.....	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCCCACACAGCCTTCAG..	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAGCCCACACAGCCTTC....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAGCCCACACAGCCTTCA...	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCCCACACAGCCT......	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

TGACGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---CAT-TTTCCAGTTCAATTTTGTAAAGCC--TCAAAATGCATAGAGCACATACAGCCTTCAGTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................................................................CAAAATGCATAGAGCACATACAGC........	24	1	2.00	2	0	0	1	1	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCACATACAGCCTTCA...	25	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................GCC--TCAAAATGCATAGAGCACA..............	22	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................AAGCC--TCAAAATGCATAGAGCA................	22	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................CC--TCAAAATGCATAGAGCA................	19	1	1.00	1	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................TTTTGTAAAGCC--TCAAAATGCATAGAGCAC...............	30	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCACATACAGC........	22	1	1.00	1	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................TCAAAATGCATAGAGCACATACAGC........	25	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATAGAGCACATACAGCCTTCAGT.	23	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCACATACAGC........	20	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................GCC--TCAAAATGCATAGAGCA................	20	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCACATACAGCCT......	21	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................GCATAGAGCACATACAGC........	18	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................TTTGTAAAGCC--TCAAAATGCATAGAG..................	26	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................TTGTAAAGCC--TCAAAATGCATAGAGCAC...............	28	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................C--TCAAAATGCATAGAGCACATACAGC........	26	1	1.00	1	0	0	0	1	0

droVir3

TTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC---GCT-TTTGCAGTTATATTTTGTAAAGCT--ACAAAATGCATAGAGCACACACGGCCTTTAGTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCACACACGGCCT......	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................AAAGCT--ACAAAATGCATAGAGC.................	22	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCACACACGGCC.......	20	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................AAAGCT--ACAAAATGCATAGAGCA................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCACACACGGC........	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCACACACGGC........	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCACACACGGCCTT.....	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCACACACGGCCT......	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAAAATGCATAGAGCACACA............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TGTAAAGCT--ACAAAATGCATAGAGC.................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AGCT--ACAAAATGCATAGAGCA................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TGTAAAGCT--ACAAAATGCATAGAGCA................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GCATAGAGCACACACGGCCTTTAGTC	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCACACACGGCCTTTAGT.	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TGTAAAGCT--ACAAAATGCA.......................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCACACACGG.........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCACACACGGC........	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGAGCACACACGGCCTTT....	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GCT--ACAAAATGCATAGAGCA................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAGAGCACACACGGCCTTT....	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAAGCT--ACAAAATGCATAGA...................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAAGCT--ACAAAATGCATAGAGCACA..............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAAAATGCATAGAGCACA..............	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCACACACG..........	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCACACACGGCCTTTA...	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TATATTTTGTAAAGCT--ACA..............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CT--ACAAAATGCATAGAGCACACACG..........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................ACAAAATGCATAGAGCACACACGGCC.......	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCACACACGGCCTTTAG..	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TTTGTAAAGCT--ACAAAATGCATA.....................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCACACACGGCCTTTA...	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................GTAAAGCT--ACAAAATGCATAGAGCAC...............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATAGAGCACACACGGCCTTTA...	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AAAATGCATAGAGCACACACGGCCTTT....	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCACACACGGCCTTTAGTC	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AAAATGCATAGAGCACACACGGCCTTTA...	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................ATTTTGTAAAGCT--ACAAAATGCATAGAG..................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCACACACGGCCTTT....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AAAATGCATAGAGCACACACGGCCTT.....	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AGCACACACGGCCTTTAGT.	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................T--ACAAAATGCATAGAGCACACACGGCC.......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CT--ACAAAATGCATAGAGCACACACGGC........	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATATTTTGTAAAGCT--ACAA.............................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAAGCT--ACAAAATGCATAGAGCACACAC...........	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................CAAAATGCATAGAGCACACACGGC........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AAAATGCATAGAGCACACAC...........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCACACACGGCCTTTA...	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCAGTTATATTTTGTAAAGCC--ACAAAATGCATAGAGCACACACGGCCTTTAGTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCACACACGGCCTTT....	23	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCACACAC...........	18	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................ACAAAATGCATAGAGCACACACGGCC.......	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TGTAAAGCC--ACAAAATGCATAGAG..................	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AAATGCATAGAGCACACACG..........	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCACACACGGCCTTTAG..	27	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TGCATAGAGCACACACGGCCT......	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GCC--ACAAAATGCATAGAGCACACA............	24	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................CC--ACAAAATGCATAGAGCACACACGGC........	27	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................AGCC--ACAAAATGCATAGAGC.................	20	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCACACACGGCC.......	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGCATAGAGCACACACGGCCTTTA...	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TTGTAAAGCC--ACAAAATGCATAGAGCACA..............	29	1	1.00	1	0	0	0	0	0	1

droGri2

C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC---TCA-CTTTCAGTTCTATTTTGTAAAGTAAAACAAAATGCATAGAGCACACACGGCCTTTAGTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................................................................................................................................................................................................................AATGCATAGAGCACACACG..........	19	1	1.00	1	1	0

dsi_17533

3l:16534615-16534764 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-34.0	-34.0	-33.8