ID:

dsi_17502

 Coordinate:

3r:4337105-4337156 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.0 -4.3 -4.1 -4.0

Flybase annnotation

exon [3r_4336643_4337104_-]; CDS [3r_4336643_4337104_-]; CDS [3r_4337157_4337361_-]; exon [3r_4337157_4337651_-]; intron [3r_4337105_4337156_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------##################################################
CTTGGCCCTTGTTTGGGTGCAGTGCCTCTGCAACTATGTGTTTGCCAAGGGTAAGTATTACGTGGACTTGCAACGAATCAATTCTGAACTGTGGTTTTCTAGTGCTGCTGACCATTAGGCCGCAAAAGGAGGACACCACCAACGCGGGCTCA
**************************************************.......((....((((.((((.....(((....)))..))))))))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
.......CTTGTTTGGGTGCAGTGCCTCTGC......................................................................................................................... 24 0 1 4.00 4 4 0 0 0 0 0 0
...............................................................................AATTCTGAACTGTGGTTTTCTAG.................................................. 23 0 1 3.00 3 3 0 0 0 0 0 0
......................................................................................AACTGTGGTATTCTAGAGCT.............................................. 20 2 1 2.00 2 0 0 1 1 0 0 0
............................................................................................................TGACCATTAGGCCGCAAAAGGAGGACA................. 27 0 1 1.00 1 0 0 0 1 0 0 0
.................................................................................................................................AGGACACCACCAACGCG...... 17 0 1 1.00 1 0 1 0 0 0 0 0
.........TGTTTAGGTGCAGTGCCTCTGC......................................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................................................................CCACCAACGCGGGCTC. 16 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................ACTGTGGTATTCTAGAGCT.............................................. 19 2 1 1.00 1 0 0 1 0 0 0 0
......................................................................................AACTGTGGTATTCTAGAG................................................ 18 2 2 0.50 1 1 0 0 0 0 0 0
......................TTCTTCTGCAACTCTGTGTTTG............................................................................................................ 22 3 2 0.50 1 0 0 0 0 0 1 0
......................................................................................AACTGTGGTAATCTAGAGCT.............................................. 20 3 5 0.40 2 0 1 1 0 0 0 0
........................................................................................CTGTGGTATTCTAGAGCT.............................................. 18 2 3 0.33 1 1 0 0 0 0 0 0
......................................................................................AACTGTGGTAATCTAGAGC............................................... 19 3 14 0.07 1 0 1 0 0 0 0 0
.....................................................................................GAAGTATGGTGTTCTAGTG................................................ 19 3 15 0.07 1 0 0 0 0 0 0 1
..............................................................................CAATTCTGTACGGTGG.......................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

GAACCGGGAACAAACCCACGTCACGGAGACGTTGATACACAAACGGTTCCCATTCATAATGCACCTGAACGTTGCTTAGTTAAGACTTGACACCAAAAGATCACGACGACTGGTAATCCGGCGTTTTCCTCCTGTGGTGGTTGCGCCCGAGT
**************************************************.......((....((((.((((.....(((....)))..))))))))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
.........................................................................................................................................AGGTTGCGCCCGAGT 15 1 10 1.70 17 10 6 0 1 0 0
.........................................................................................................................................AGGATGCGCCCGAGT 15 2 20 0.25 5 0 0 0 4 0 1
.....................................................................................................................................GTGGTGGCTGCGACCGAG. 18 2 4 0.25 1 0 0 1 0 0 0
....CGGGAGCAAACCTACGTC.................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 1 0
..............................................................................................AAAGGATCATGACGACT......................................... 17 2 12 0.17 2 2 0 0 0 0 0
....................................................................................................................................TGTGGTGGCTGCGACCG... 17 2 20 0.10 2 0 0 2 0 0 0
.....................................................................................................................................GTGGTGGCTGCGCCCCAGA 19 3 14 0.07 1 0 0 1 0 0 0
..............................................................................................AAAAGGTCAAGACGAATGGT...................................... 20 3 20 0.05 1 0 0 1 0 0 0
......................................................................................................GCGACTACTGGTAATGCGG............................... 19 3 20 0.05 1 1 0 0 0 0 0

Generated: 04/24/2015 at 01:45 AM