ID:

dsi_17488

 Coordinate:

x:1736428-1736708 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-77.0 -77.0 -77.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGCGAGGACAAGGCCACCGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTACCCGCTAGGCATTAGGTCAGCTTTCCACTTCAAAGCATTTCTAAATCTTGGACGTGGTAAGCAAGATAAGCCTAAGCTCCGCCAACCTATTGATACTTGGAGCACATGCTGCCAGTTTGCCTCGCATGGCTAATAATCTTGAAATTCTTCCGCCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGAGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTAGTTAGTCCCCTG
**************************************************.....(((((((((((..(((((...(((((.......)))))...)))))..))))).)).))))..((((((.(((....((((((................)))))).(((((.((......))...))))))))....))))))....(((.((((((((((...(((((........((..((((.....)))).))))))).)))))).)))).)))(((((..(((..((((((....((.....))....)))))).))).))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
................................................................................................................................................................................................................................TCTTCAAGCGGACGGTGCAGAACC..................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................CGAGTCTACACCTGCGTGGCGGAC........................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................AGAATTTCTACATCTTGGAC............................................................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................TACGGCATCATCACCTGCGAGT............................................................................................................................................................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................AGCGCAACCCTTGTCATT................................................................ 18 2 3 1.00 3 0 2 1 0 0 0 0 0 0 0
..................................................................................................................TAAGAAAGATAAGCATAGGCT...................................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................GAATTTCTACATCTTGGAC............................................................................................................................................................................................................................................................................... 19 2 2 1.00 2 0 0 0 2 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................TTGTCGATTTAAGAAGTGC............................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................GCGCAACCCTTGTCATTAGT............................................................. 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................GAGCGCAACCCTTGTCATT................................................................ 19 3 12 0.25 3 0 3 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................GCGCAACCCTTGTCATTA............................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 0 1 0
........................................CCTGCGAGGGGTAGCTA.................................................................................................................................................................................................................................................................................................................................... 17 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................AGATTACCAAAGCAC.................................................................................. 15 1 13 0.15 2 0 0 0 0 0 0 0 2 0 0
............................................................................................AATTTCTACATCTTGGAC............................................................................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0
..................................................GTAGGTCCCCGCCAGGCAT........................................................................................................................................................................................................................................................................................................................ 19 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................GCGCAACCCTTGTCATT................................................................ 17 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................GAGCGCAACCCTTGTCA.................................................................. 17 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ACCGTTGCTAGTATTGT........................................................... 17 2 12 0.08 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................CGCAACCCTTGTCATTA............................................................... 17 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................GGTTGTCAGTATTGAGGAT....................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 1
....................................................................................................AATCCTGGATGTTGTAAGC...................................................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0
....................................................AAGTGCCCGCTAGGCT......................................................................................................................................................................................................................................................................................................................... 16 2 19 0.05 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................CGCAACCCTTGTCATTAGT............................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........................................CCTGCGAGGGGTAGCT..................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACGCTCCTGTTCCGGTGGCCGGACGTGATGCCGTAGTAGTGGACGCTCCCCATTCATGGGCGATCCGTAATCCAGTCGAAAGGTGAAGTTTCGTAAAGATTTAGAACCTGCACCATTCGTTCTATTCGGATTCGAGGCGGTTGGATAACTATGAACCTCGTGTACGACGGTCAAACGGAGCGTACCGATTATTAGAACTTTAAGAAGGCGGTCCACGTTCCCGAAGAAGTTCGCCTGCCACGTCTTGGCTGCTCAGATGTGGACGCACCGCCTGCCGTGGACGCTCTATTGGTTTCGTGTCGCGTTGGCAACAGTCATAACAGCTAAATTCTTCACGTAGCTCGTCCCGTACCACGACGTTCCACTCATCAATCAGGGGAC
**************************************************.....(((((((((((..(((((...(((((.......)))))...)))))..))))).)).))))..((((((.(((....((((((................)))))).(((((.((......))...))))))))....))))))....(((.((((((((((...(((((........((..((((.....)))).))))))).)))))).)))).)))(((((..(((..((((((....((.....))....)))))).))).))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR1275485
Male prepupae		 SRR553488
RT_0-2 hours eggs
 M023
head
 M025
embryo
 O001
Testis
.......................................................................................................................................................................................................................................................................................GACGATCTATTGGTTTCG.................................................................................... 18 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................TTAATTCTTCACGTAGCTCAACC.................................. 23 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GTCTTGGCTGCTCAGATGTGG....................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................TCGTAAAGATTTAGAACCTGCACCAT......................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................CTCTATTTGTTTCGGGTCGCG............................................................................. 21 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0
......................AGGTGATGCAGTAGTAGTGT................................................................................................................................................................................................................................................................................................................................................... 20 3 10 0.70 7 0 1 1 5 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................CTCTATTTGTTTCGTG.................................................................................. 16 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................CTCTATTGGTTTCGGGTCACG............................................................................. 21 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..........TCCTGTGGCGGGACGTGA................................................................................................................................................................................................................................................................................................................................................................. 18 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CGATCTATTGGTTTCG.................................................................................... 16 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................AAGTTTCGTAAAGAGTT....................................................................................................................................................................................................................................................................................... 17 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0
..................CCGGATGTGATGCCTTTG......................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.15 3 0 0 0 2 0 0 0 0 1 0
.......................................................................CCAGTCGAAGTGTGCAGT.................................................................................................................................................................................................................................................................................................... 18 3 20 0.15 3 0 0 0 0 0 0 3 0 0 0
........................................................................................................................................................................................................................................................................................ACTCTCTATTTGTTTCGGGTC................................................................................ 21 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................ACCACGAGGTTCCAC................ 15 1 18 0.11 2 0 0 0 2 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................ACAGTCGTAAGAGATAAATT................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................GCACGTCTTGGGTGCT................................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGCGCCTGCATCGTCTTGG..................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................AGTGATAACAGTGAAATTC.................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................CGTACAACGGCGTTCCGCT............... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
......AGGTACCGGTGGCCGGACG.................................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:1736378-1736758 + dsi_17488 TGCGAGGACAAGGCCACCGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTA----------------------------------------CCCGCTAGGCATTAGGTCAGCTTTCCACTTCAAAG----CAT-----------------------------TTCTAAAT------CTTGGACGTGGTAA--GCA-AGATAAGCCTAAGCTCCGCCAACCTATTGATACTTG-----------------------GAGCACATGCTGCCAGTTTGCCTCGCATGGCTAAT------AATCTTGA-A--------------------------------------------------------------ATTCTT------------------------------------------------CCG-CCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGAGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTA-----------------GTTA-------------G--TCCCCT---------G
droSec2 scaffold_10:1679978-1680358 + TGCGAGGACAAGGCCACCGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTA----------------------------------------CCCGCTAGGCATTAGGTCAGCTTTCCACTTCTAAG----CAT-----------------------------TTCTAAAT------CTTGGACGTGGTAA--GCA-AGATAAGCCTAAGCTCCGCCAACCTATTGATACTTG-----------------------GAGCACATGCTGCCAGTTTGCCTCGCATGGCTAAT------AATCTTGA-A--------------------------------------------------------------ATTCTT------------------------------------------------CCG-CCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGAGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTA-----------------CTTA-------------G--TCCCCT---------G
dm3 chrX:1894389-1894754 + TGCGAGGACAAGGCCACCGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTA----------------------------------------CGTGCTAGGCATTAAGTCAGCTTTCCACTTCTAAG----CGT-----------------------------TTCTAAAT------CTTGGACATGGTAA--GCA-AGATAAGCCAAAGCTCCGTCAACATC--------------------------------------AATGCTACCACTTTGCCCCGCATGGCTAAT------AATCTTGG-A--------------------------------------------------------------ATTCTC------------------------------------------------CCG-ACAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGAGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTA-----------------CTTA-------------G--TCCCCT---------G
droEre2 scaffold_4644:1864905-1865280 + TGCGAGGACAAGGCCACCGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTA----------------------------------------CCCGCTGGCCACCGAGTCAGTTTTCCACTTCCAAG----CGT---------------------------------------------TGGACATGGTAAGAGCC-AGATCAGCTTGAGC-CCGTGCACCCATTGCCACCCA-----------------------CAG----------CAGTCTGCCTCGCATGGCTAAT------GATCTTGC-A--------------------------------------------------------------ATTCTC---------------------------CAATTCTCCAAT-TC------TCG-CCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGAGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTA-----------------CTTG-------------G--TCCACT---------G
droYak3 3L:15308215-15308368 + T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGGGCTTCTTCAAGCGCACCGTGCAGAACAAGAAGGTCTACACCTGCGTGGCGGAGCGGTCGTGCCACATCGACAAGACGCAGCGCAAGCGGTGTCCCTACTGCCGATTCCAGAAGTGCCTTGAAGTGGGCATGAAGCTAGAGGGTGAGT------------------------------------------------------
droEug1 scf7180000409182:437739-438037 + TGCGAGGACAAGGCCACCGGCCTGCACTACGGCATCATCACGTGCGAGGGGTAAGTAAAAAGCTTCCTGAGTC-------------------------------------------------------------------------------------------------CTAAAT------C----------------CA-AA--------------------------------CT-----------------------GAGTACTAA----------------------T-CTAATCCGAATCCTTGAA--------------------------------------------------------------ATTTT-------------AC-----------------------------CT---CCG-TCAGGTGCAAGGGCTTCTTTAAGCGGACGGTGCAGAACCGACGCGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGGAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTA-----------------CTTGAC-----------G--TCTCCT----------
droBia1 scf7180000301760:4499045-4499225 + TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG-CCAGGTGCAAGGGCTTCTTCAAGCGAACGGTGCAGAACCGACGCGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAGGGTGAGTACC----GCCGACAGCCGCTT--------------------------------G
droTak1 scf7180000415211:47286-47456 - T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCA-CCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGCGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGTATGGTGCTGCAAGGTGAGTG-----------------ATTA-------------T--T--------------A
droEle1 scf7180000491001:1405952-1406140 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCTAG-A--------------------------------------------------------------ACTCTC------------TC--------CGAAT---------------GCT---CCG-TTAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGGGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGGGTA-----------------------------------------------------
droRho1 scf7180000777610:24110-24300 - TGAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--------------------------------C-----------ATCTA-ATC---CCCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGGGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTG------GG---------CGGA-------------A--TCTCCT---------C
droFic1 scf7180000454072:3007055-3007236 + TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG-CCAGATGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGCGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTG-----------------TT------------------CCTCCTCCTCCTCCTA
droKik1 scf7180000302610:159733-160030 + TGTGAGGATAAGGCCACCGGCCTTCACTATGGCATCATCACGTGCGAAGGGTGAGTGTTGTTATTTTGGATTC-------------------------------------------------------------------------------------------------AAAAAT------C----------------CC-AA--------------------------------TT------------------CCCTGGAGTATGTA----------------------T-ATATTT------T---------------------------------------------------------------CTATATTTTT------------------------------------------------CTGATCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACAGGCGTGTCTACACCTGCGTGGCGGATGGAACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTG-----------------GTTAAG-----------GTTGCTCCC---------T
droAna3 scaffold_12929:1886070-1886348 + TGCGAGGACAAGGCCACCGGTCTCCACTACGGCATCATAACATGCGAGGGGTAAGTCTTCCCA----------C----------------------------------------------------------------------------------------------------C-TTCTTGC----------------CACAA--------------------------------CTGGGTAGAGTATACTAATGTCCT-----------------------------------------G-------------------------GATCCTT-------------------------------------------------------------------------------------------------TGCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGGAGGGTCTACACCTGCGTGGCGGATGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGTTTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAGGGTCAGTA-----------------TT------------------CCTTCT---------A
droBip1 scf7180000396543:346817-347103 + TGCGAGGACAAGGCCACAGGCCTCCACTACGGCATCATAACATGCGAGGGGTAAGTTCCA-----------------------------------------------------------------------C----CACTAGCTTCTCCAGTACTCTGGATCGTAATCG------------------------------------------------------------------------------------------------------------------------------------G-------------------------GATCTAT-------------------------------------------------------------------------------------------------TGCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGAAGGGTCTACACCTGCGTGGCGGATGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGTTTTAAGAAGTGCATTGAGCAGGGTATGGTGCTGCAAGGTCAGTA-----------------TT-GTTGTATTCCATTAT--CCCCCA---------T
dp5 XL_group1a:2564263-2564567 + TGCGAGGACAAGGCCACTGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTGTT------------------------------------------------------------TTC-----CCACG----CCT---------------------------------------------ATGAGATGGCAGCAG---------------------------------CACCCA-----------------------CAC----------CAGA-----------GACTA-----------------------------------------------ATCC--TCCCCCCATCGCCCCCACCCTCCCCATA--------------------------------C-----------TTTTC-ATC---CACAGCTGCAAGGGCTTCTTCAAGCGCACGGTGCAGAACCGACGCGTCTACACCTGCGTGGCGGACGGCACCTGCGAAATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAATGCATTGAGCAGGGCATGGTGCTGCAGGGTGAGTA-----------------------------------------------------
droPer2 scaffold_28:1001201-1001505 + TGCGAGGACAAGGCAACTGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTTTT------------------------------------------------------------TGC-----CCACG----CCT---------------------------------------------TGGAGATGGCAGCAG---------------------------------CACCCA-----------------------CAC----------CAGA-----------GACTA-----------------------------------------------ATCC--TCCCCCCATCGCCCCCACCCTCCCCATA--------------------------------C-----------TTTTC-ATC---CACAGCTGCAAGGGCTTCTTCAAGCGCACGGTGCAGAACCGACGCGTCTACACCTGCGTGGCGGACGGCACCTGCGAAATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAATGCATTGAGCAGGGCATGGTGCTGCAGGGTGAGTA-----------------------------------------------------
droWil2 scf2_1100000004909:7007339-7007654 - TGTGAGGATAAGGCCACCGGATTACACTATGGCATCATTACATGCGAGGGGTGAGTAATA--------------------------CACACAGAGAACTGGCCTGGCATTAGTTCC-------ATTCGT---TTGCAAC----------------------------------------------------------------------------------------------------------------------------------------TGC-----------AACTC-----------------------------------------------TTTTTTTCCTTCTCTCTCTCTCTCTC---------TCTC------------------------------------------------TCG-TTAGCTGCAAGGGATTCTTCAAGCGCACGGTACAGAATCGTCGGGTTTATACCTGCGTGGCGGATGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAATGCATTGAGCAGGGCATGGTGCTGCAAGGTAAGTCCAGAACAACGAA-----------------------------------------
droVir3 scaffold_12932:1651335-1651617 + TGCGAGGACAAGGCCACCGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTGTCGCCA----------CAAATCTCCAATTTAAGCAAAAAACTA-------------------------------------AC-----------------------------TGCTAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTC-ACC---TGCAGCTGCAAGGGCTTCTTCAAGCGCACGGTGCAGAACCGCAGGGTCTACACCTGCGTCGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTCAGTA------GACGAAGCCAACTT--------------------------------G
droMoj3 scaffold_6473:2957941-2958282 - TGCGAGGACAAGGCCACCGGACTGCACTACGGCATCATCACCTGCGAGGGGTAAGTTGAA-----------------------------------------------------------------------G----CAC-----------------------------GGCTAAAC------CT---------------CA-AG--------------------------------TG-----------------------GAGCACTTGA--------------------------------------CAAAGTTGATCTAACATTGATCTATCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC---------TCTCTCTCTCCATCTC-CCTCTGTGA-----------------TCCTC-TCC---TGCAGATGCAAGGGCTTCTTCAAGCGCACCGTGCAGAACAGAAGGGTCTACACGTGCGTTGCCGATGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAATGCATTGAGCAGGGCATGGTGCTGCAAGGTCAGTA-----------------------------------------------------
droGri2 scaffold_15203:5573086-5573244 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTGCAAGGGCTTCTTCAAGCGGACCGTGCAGAACCGACGCGTCTACACGTGCGTGGCGGATGGAACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAATGCATTGAGCAGGGCATGGTGCTGCAAGGTCAGTA-----------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGCGAGGACAAGGCCACCGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTA----------------------------------------CCCGCTAGGCATTAGGTCAGCTTTCCACTTCAAAG----CAT-----------------------------TTCTAAAT------CTTGGACGTGGTAA--GCA-AGATAAGCCTAAGCTCCGCCAACCTATTGATACTTG-----------------------GAGCACATGCTGCCAGTTTGCCTCGCATGGCTAAT------AATCTTGA-A--------------------------------------------------------------ATTCTT------------------------------------------------CCG-CCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGAGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTA-----------------GTTA-------------G--TCCCCT---------GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCAAGCGGACGGTGCAGAACC..............................................................................................................................................................................2412.00200200000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCTACACCTGCGTGGCGGAC....................................................................................................................................................2411.00100100000000000000
...........................TACGGCATCATCACCTGCGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGATTTAAGAAGTGC.....................................................................................1911.00100000100000000000
droSec2
TGCGAGGACAAGGCCACCGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTA----------------------------------------CCCGCTAGGCATTAGGTCAGCTTTCCACTTCTAAG----CAT-----------------------------TTCTAAAT------CTTGGACGTGGTAA--GCA-AGATAAGCCTAAGCTCCGCCAACCTATTGATACTTG-----------------------GAGCACATGCTGCCAGTTTGCCTCGCATGGCTAAT------AATCTTGA-A--------------------------------------------------------------ATTCTT------------------------------------------------CCG-CCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGAGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTA-----------------CTTA-------------G--TCCCCT---------GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCGAGCAGGGCATGGTGT..................................................................2211.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGCGTGGCGGACGGCACC..............................................................................................................................................2111.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGCATCGAGCAGGGCATGGT....................................................................2411.0011000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCTTCTTCAAGCGGACGGTGC....................................................................................................................................................................................2411.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAAGAAGTGCATCGAGCA.............................................................................2211.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGGCTTCTTCAAG..............................................................................................................................................................................................1830.3310010
dm3
TGCGAGGACAAGGCCACCGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTA----------------------------------------CGTGCTAGGCATTAAGTCAGCTTTCCACTTCTAAG----CGT-----------------------------TTCTAAAT------CTTGGACATGGTAA--GCA-AGATAAGCCAAAGCTCCGTCAACATC--------------------------------------AATGCTACCACTTTGCCCCGCATGGCTAAT------AATCTTGG-A--------------------------------------------------------------ATTCTC------------------------------------------------CCG-ACAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGAGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTA-----------------CTTA-------------G--TCCCCT---------GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCATGGTGCTGCAAG............................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGAGATAACCAAAGCA............................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTACACCTGCGTGGCGG......................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCTTCTTCAAGCGGACGGTGC....................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CGGCCTGCACTACGGCATCATCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTGCGTGGCGGACGGCA................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGAGTCTACACCTGCGTGGCGG......................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCATCGAGCAGGGCATGGTGCTGC...............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................TAAGTCAGCTTTCCACTTCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGAGCAGGGCATGGTGCTGCA..............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACCTGCGAGATAACCAAAGCACA..........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGAACCGACGAGTCTACAC.................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACACCTGCGTGGCGGACG...................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCAAGCGGACGGTGCAGA.................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CTTGG-A--------------------------------------------------------------ATTCTC------------------------------------------------CCG-ACAG.................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGACGGCACCTGCGAGA.......................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATTGTCGATTTAAGAAG........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCGAGCAGGGCATGGTGCT.................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGTATTGTCGATTTAAG...........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGTTGTCAGTATTGTCGATTTAA............................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCACAGCGCAACCGTTGTC............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................A--------------------------------------------------------------ATTCTC------------------------------------------------CCG-ACAGGTAA.............................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACACCTGCGTGGCG.......................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droEre2
TGCGAGGACAAGGCCACCGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTA----------------------------------------CCCGCTGGCCACCGAGTCAGTTTTCCACTTCCAAG----CGT---------------------------------------------TGGACATGGTAAGAGCC-AGATCAGCTTGAGC-CCGTGCACCCATTGCCACCCA-----------------------CAG----------CAGTCTGCCTCGCATGGCTAAT------GATCTTGC-A--------------------------------------------------------------ATTCTC---------------------------CAATTCTCCAAT-TC------TCG-CCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGAGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTA-----------------CTTG-------------G--TCCACT---------GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAACCGTTGTCAGTATTGTCGAT................................................................................................2611.0011000000
...............................................................................................................................................................................................................................ACCCATTGCCACCCA-----------------------CAG----------CAGTC..............................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACCTGCGTGGCGGA.....................................................................................................................................................1820.5010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACACCTGCGTGGCGGA.....................................................................................................................................................2020.5010001000
droYak3
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGGGCTTCTTCAAGCGCACCGTGCAGAACAAGAAGGTCTACACCTGCGTGGCGGAGCGGTCGTGCCACATCGACAAGACGCAGCGCAAGCGGTGTCCCTACTGCCGATTCCAGAAGTGCCTTGAAGTGGGCATGAAGCTAGAGGGTGAGT------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAGAAGGTCTACACCTGCGTGGC........................................................................................................................................................2711.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGTGCAGAACAAGAAGGC.......................................................................................................................................................................2111.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCAAGCGCACCGTGCAGAACAAGA...........................................................................................................................................................................2811.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGACGCAGCGCAAGCG.................................................................................................................2011.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCTTCAAGCGCACCGTGC....................................................................................................................................................................................2211.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAGGTCTACACCTGCGTGGCGGAGC...................................................................................................................................................2911.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAGAAGGTCTACACCTG..............................................................................................................................................................2111.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACATCGACAAGACGCAGC........................................................................................................................2211.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGCACCGTGCAGAACAAG............................................................................................................................................................................2211.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGCGGTCGTGCCACATCGA...................................................................................................................................2311.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTCTACACCTGCGTGGC........................................................................................................................................................2011.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACCTGCGTGGCGGAGCGGTCGT.............................................................................................................................................2611.00100000010000
droEug1
TGCGAGGACAAGGCCACCGGCCTGCACTACGGCATCATCACGTGCGAGGGGTAAGTAAAAAGCTTCCTGAGTC-------------------------------------------------------------------------------------------------CTAAAT------C----------------CA-AA--------------------------------CT-----------------------GAGTACTAA----------------------T-CTAATCCGAATCCTTGAA--------------------------------------------------------------ATTTT-------------AC-----------------------------CT---CCG-TCAGGTGCAAGGGCTTCTTTAAGCGGACGGTGCAGAACCGACGCGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGGAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTA-----------------CTTGAC-----------G--TCTCCT----------SizeHit CountTotal NormTotal
No Reads
droBia1
TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG-CCAGGTGCAAGGGCTTCTTCAAGCGAACGGTGCAGAACCGACGCGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAGGGTGAGTACC----GCCGACAGCCGCTT--------------------------------GSizeHit CountTotal NormTotal
No Reads
droTak1
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCA-CCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGCGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGTATGGTGCTGCAAGGTGAGTG-----------------ATTA-------------T--T--------------ASizeHit CountTotal NormTotal
No Reads
droEle1
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCTAG-A--------------------------------------------------------------ACTCTC------------TC--------CGAAT---------------GCT---CCG-TTAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGGGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGGGTA-----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--------------------------------C-----------ATCTA-ATC---CCCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGGGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTG------GG---------CGGA-------------A--TCTCCT---------CSizeHit CountTotal NormTotal
No Reads
droFic1
TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG-CCAGATGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGACGCGTCTACACCTGCGTGGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTG-----------------TT------------------CCTCCTCCTCCTCCTASizeHit CountTotal NormTotal
No Reads
droKik1
TGTGAGGATAAGGCCACCGGCCTTCACTATGGCATCATCACGTGCGAAGGGTGAGTGTTGTTATTTTGGATTC-------------------------------------------------------------------------------------------------AAAAAT------C----------------CC-AA--------------------------------TT------------------CCCTGGAGTATGTA----------------------T-ATATTT------T---------------------------------------------------------------CTATATTTTT------------------------------------------------CTGATCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACAGGCGTGTCTACACCTGCGTGGCGGATGGAACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTGAGTG-----------------GTTAAG-----------GTTGCTCCC---------TSizeHit CountTotal NormTotal
No Reads
droAna3
TGCGAGGACAAGGCCACCGGTCTCCACTACGGCATCATAACATGCGAGGGGTAAGTCTTCCCA----------C----------------------------------------------------------------------------------------------------C-TTCTTGC----------------CACAA--------------------------------CTGGGTAGAGTATACTAATGTCCT-----------------------------------------G-------------------------GATCCTT-------------------------------------------------------------------------------------------------TGCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGGAGGGTCTACACCTGCGTGGCGGATGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGTTTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAGGGTCAGTA-----------------TT------------------CCTTCT---------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGCGAGGACAAGGCCACAGGCCTCCACTACGGCATCATAACATGCGAGGGGTAAGTTCCA-----------------------------------------------------------------------C----CACTAGCTTCTCCAGTACTCTGGATCGTAATCG------------------------------------------------------------------------------------------------------------------------------------G-------------------------GATCTAT-------------------------------------------------------------------------------------------------TGCAGGTGCAAGGGCTTCTTCAAGCGGACGGTGCAGAACCGAAGGGTCTACACCTGCGTGGCGGATGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGTTTTAAGAAGTGCATTGAGCAGGGTATGGTGCTGCAAGGTCAGTA-----------------TT-GTTGTATTCCATTAT--CCCCCA---------TSizeHit CountTotal NormTotal
No Reads
dp5
TGCGAGGACAAGGCCACTGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTGTT------------------------------------------------------------TTC-----CCACG----CCT---------------------------------------------ATGAGATGGCAGCAG---------------------------------CACCCA-----------------------CAC----------CAGA-----------GACTA-----------------------------------------------ATCC--TCCCCCCATCGCCCCCACCCTCCCCATA--------------------------------C-----------TTTTC-ATC---CACAGCTGCAAGGGCTTCTTCAAGCGCACGGTGCAGAACCGACGCGTCTACACCTGCGTGGCGGACGGCACCTGCGAAATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAATGCATTGAGCAGGGCATGGTGCTGCAGGGTGAGTA-----------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCGTCTACACCTGCGTGGCGGACG...................................................................................................................................................2711.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCTTCAAGCGCACGGTGC....................................................................................................................................................................................2220.5010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAAGGGCTTCTTCAAG..............................................................................................................................................................................................1930.3310000100000
droPer2
TGCGAGGACAAGGCAACTGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTTTT------------------------------------------------------------TGC-----CCACG----CCT---------------------------------------------TGGAGATGGCAGCAG---------------------------------CACCCA-----------------------CAC----------CAGA-----------GACTA-----------------------------------------------ATCC--TCCCCCCATCGCCCCCACCCTCCCCATA--------------------------------C-----------TTTTC-ATC---CACAGCTGCAAGGGCTTCTTCAAGCGCACGGTGCAGAACCGACGCGTCTACACCTGCGTGGCGGACGGCACCTGCGAAATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAATGCATTGAGCAGGGCATGGTGCTGCAGGGTGAGTA-----------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGTGAGGATAAGGCCACCGGATTACACTATGGCATCATTACATGCGAGGGGTGAGTAATA--------------------------CACACAGAGAACTGGCCTGGCATTAGTTCC-------ATTCGT---TTGCAAC----------------------------------------------------------------------------------------------------------------------------------------TGC-----------AACTC-----------------------------------------------TTTTTTTCCTTCTCTCTCTCTCTCTC---------TCTC------------------------------------------------TCG-TTAGCTGCAAGGGATTCTTCAAGCGCACGGTACAGAATCGTCGGGTTTATACCTGCGTGGCGGATGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAATGCATTGAGCAGGGCATGGTGCTGCAAGGTAAGTCCAGAACAACGAA-----------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGCGGATGGCACCTG............................................................................................................................................1911.00100010
..............CACCGGATTACACTATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGTTGTCAGTATTGTC...................................................................................................1911.00100010
droVir3
TGCGAGGACAAGGCCACCGGCCTGCACTACGGCATCATCACCTGCGAGGGGTAAGTGTCGCCA----------CAAATCTCCAATTTAAGCAAAAAACTA-------------------------------------AC-----------------------------TGCTAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTC-ACC---TGCAGCTGCAAGGGCTTCTTCAAGCGCACGGTGCAGAACCGCAGGGTCTACACCTGCGTCGCGGACGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAGTGCATCGAGCAGGGCATGGTGCTGCAAGGTCAGTA------GACGAAGCCAACTT--------------------------------GSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGAGCAGGGCATGGTGCT.................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
........................CACTACGGCATCATCACCTGCGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCATCGAGCAGGGCATGGT....................................................................2311.001000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAAGGGCTTCTTCAAG..............................................................................................................................................................................................1940.251000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGCTTCTTCAAGCG............................................................................................................................................................................................1950.201000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGGCTTCTTCAAGC.............................................................................................................................................................................................1950.201000000000000000100000000000000000000000000000000000000000000000
droMoj3
TGCGAGGACAAGGCCACCGGACTGCACTACGGCATCATCACCTGCGAGGGGTAAGTTGAA-----------------------------------------------------------------------G----CAC-----------------------------GGCTAAAC------CT---------------CA-AG--------------------------------TG-----------------------GAGCACTTGA--------------------------------------CAAAGTTGATCTAACATTGATCTATCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC---------TCTCTCTCTCCATCTC-CCTCTGTGA-----------------TCCTC-TCC---TGCAGATGCAAGGGCTTCTTCAAGCGCACCGTGCAGAACAGAAGGGTCTACACGTGCGTTGCCGATGGCACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAATGCATTGAGCAGGGCATGGTGCTGCAAGGTCAGTA-----------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGCTTCTTCAAGCGCACC........................................................................................................................................................................................2320.501000010
droGri2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTGCAAGGGCTTCTTCAAGCGGACCGTGCAGAACCGACGCGTCTACACGTGCGTGGCGGATGGAACCTGCGAGATAACCAAAGCACAGCGCAACCGTTGTCAGTATTGTCGATTTAAGAAATGCATTGAGCAGGGCATGGTGCTGCAAGGTCAGTA-----------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGCGTGGCGGATGGAA................................................................................................................................................1911.00110
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCTTCTTCAAGCGGA..........................................................................................................................................................................................1911.00110

Generated: 05/18/2015 at 10:08 AM