ID:

dsi_1748

Coordinate:

3r:10596795-10596944 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-20.5	-20.2	-20.2

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

TAACCCTGAACATGGTGTAATGGAAAATCAAATTTACATTTATTTCATGTCGTGAGTCTTTTGTCAGTGAATTGTTTAAGTTAATTTATAAGATCTACAAATAAAGATCTTTAGAAATAAATATTATTAAGAATATAATATTCAGTAAGCACCTAACTAAACATTCCATTAATGAATGAAATTCTATTGTCTTCTTACAGAATGAAGGCTTCGAACCTGCAACGCATGGCATCAGCAAAACGGACGGAAG ************************************************.(((((((.(((((.((((...((((((.((((.((((.(((((((........)))))))))))....((((((((.......))))))))...........))))))))))...)))).))))).))..............)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M053 female body	M025 embryo	O001 Testis	O002 Head	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	M023 head
...................................................................................................................................................................................................................CGAACCTGCAACGCATGGCATCAGC..............	25	0	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................ATGAAGGCTTCGAACCTGCAACGCATGGC....................	29	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AAGGCTTCGAACCTGCAACGCATGGCA...................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................AATATTATTAAGAATATA.................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGCAACGCATGGCATCAGCA.............	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................CGCATGGCATCAGCAAAACGGACGGA..	26	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................CTTCGAACCTGCAACGCATGGCATCA................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................ACGCATGGCATCAGCAAAACGGAC.....	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................TCTACCAGTAAAGATCTTTATA.......................................................................................................................................	22	3	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.........CCATGGTGTAATGGAA.................................................................................................................................................................................................................................	16	1	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................AATATTATTAAGAATA...................................................................................................................	16	0	6	0.17	1	0	0	0	0	0	0	0	0	1	0	0
.........................................ATTCCATGTGGTGTGTCTTTT............................................................................................................................................................................................	21	3	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................ATATTATTAAGAATA...................................................................................................................	15	0	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................AATATTATTAAGAATAAA.................................................................................................................	18	1	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CTTTGATCCTGAAACGCATG......................	20	3	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................................TTCGAACCCGCGACGC.........................	16	2	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0
.........................AATCAAATTTACATGGAT...............................................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

Anti-sense strand reads

ATTGGGACTTGTACCACATTACCTTTTAGTTTAAATGTAAATAAAGTACAGCACTCAGAAAACAGTCACTTAACAAATTCAATTAAATATTCTAGATGTTTATTTCTAGAAATCTTTATTTATAATAATTCTTATATTATAAGTCATTCGTGGATTGATTTGTAAGGTAATTACTTACTTTAAGATAACAGAAGAATGTCTTACTTCCGAAGCTTGGACGTTGCGTACCGTAGTCGTTTTGCCTGCCTTC ************************************************.(((((((.(((((.((((...((((((.((((.((((.(((((((........)))))))))))....((((((((.......))))))))...........))))))))))...)))).))))).))..............)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	O002 Head	SRR902009 testis	SRR553488 RT_0-2 hours eggs	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo
.............................................................................................................................................................................................................TCCTAAGCTTGGACGCTG...........................	18	2	7	4.29	30	19	8	0	0	1	0	0	1	0	1	0
.....................................................................................................................................................................................................................................GTAGTCGTTTTGCCTGCCTTC	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................CACTCAGAAAACAGTCAC.....................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................ATAACAGAACAATGGCTAACT.............................................	21	3	4	0.75	3	0	0	0	3	0	0	0	0	0	0	0
............................................................................................................................................................................................................TTCCTAAGCTTGGACGCTGG..........................	20	3	5	0.20	1	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................TCCTAAGCTTGGATGTTG...........................	18	2	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CGTCCCAAGCTTGGACGCTG...........................	20	3	5	0.20	1	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................TCCTAAGCTTGGACGCTGCGG........................	21	3	5	0.20	1	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................TTCCTAAGCTTGGACGCT............................	18	2	6	0.17	1	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................ACGTCCTAAGCTTGGAC...............................	17	2	20	0.15	3	0	0	0	0	0	0	1	0	2	0	0
..........................................................................................................................................................................TTCCTTACTTTAAGAT................................................................	16	1	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................TCCTAAGCTTGGACGCTGGG.........................	20	3	17	0.12	2	0	0	0	0	0	2	0	0	0	0	0
.............................................................................................................................................................................................................TCCCTAGCTTGGACGTT............................	17	2	19	0.11	2	0	0	0	0	1	0	0	1	0	0	0
.........................................................................................................................................................................................................TACTTCCTAAGCTTG..................................	15	1	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0
..................TTACTTTTTAGTTTAAAT......................................................................................................................................................................................................................	18	1	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................ATTATAAGTGATTCATGGAAT..............................................................................................	21	3	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1
....................................................................................AAAAATTCTAGATGT.......................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................CCTAAGCTTGGACGCTGGG.........................	19	3	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0

Generated: 04/24/2015 at 10:46 AM