ID:

dsi_17470

 Coordinate:

node_3006:9238-9534 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.5 -39.5 -39.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Gypsy-21_DYa-I-intLTRGypsy-
Gypsy-21_DYa-I-intLTRGypsy-
Gypsy-21_DYa-I-intLTRGypsy-
mature
  1. 3l:23328218-23328233 +
  2. 3l:23505858-23505873 -
  3. node_70634:118-133 -
  4. node_9272:42-57 +
  5. node_53000:72-87 +
  6. dsi_17470  node_3006:9336-9351 -
star

Sense Strand Reads

AGCAAGCCTTGGCATTAATGAAAACATGTATAAAATGGTTAAAATATCTGGTAAAAGAATCAAAAACTAGCAACTGACGTAGTAGCCAATTGCGATTCCCAGTGAAACTGTTATAGAATATGAGGCAGTTCAGAAAAAACTATTCGACAATTTAACTGTTACAGAAAATAAAACGATTAAGGAAAAGCTAGCAGAATGTGAGACAATTGATGAAAAAATTAAATGAAGTTAATAAGGAAAACGAAGTGGAAAATATAAATTTTAATTTTCGTGAATCCATTAGTGCAATTTAAATTTTTAAGAATGCCTATGGCGTTGTGTTTATAAGACTAGTCAAGAAGTACCTGCGATTTTTTATCACCAAGAAATGAATTATAGCAGATGACAAGGGTTTTTA
**************************************************...............(((((.....(((((((..(((((((((((.......((((.(((((.((.....)).)))))))))...........))).))))....((((((...........................)))))).........((.(((((......))))).))..........(((..((((((...(((((....)))))...))))))...)))..(((.(((.(((((....)))))..)))))))))).))))))).......))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.........................................................................................................................................................................................................................................AAGGAAAACGAAGTGG.................................................................................................................................................... 16 0 6 2.00 12 8 3 0 1 0
.........................................................................................................................................................................ATAACGATTAAGGAAAAGCTA............................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................................AAGGAAAACGAAGTG..................................................................................................................................................... 15 0 7 1.00 7 7 0 0 0 0
.........................................................................................................................................................................................................GACAATGGATGAAAAAA................................................................................................................................................................................... 17 1 3 0.33 1 0 0 0 1 0
................................................................................................................................................................................................................................................................AAATTTTAGTTGTCGTGA........................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0
...........................................................................................................................................................................................................................................GGAAAACGAAGTGGGAA................................................................................................................................................. 17 1 4 0.25 1 1 0 0 0 0
............................................................................................................................................................................................................................................GAAAACGAAGTGGGAA................................................................................................................................................. 16 1 9 0.22 2 0 1 0 0 1
............................................................................................................................................................................................................................................GAAAACGAAGTGGGA.................................................................................................................................................. 15 1 20 0.20 4 0 1 2 0 1
................................................................................................................................................................................................................................................................AAATTTTAGTTGTCGTGAAG......................................................................................................................... 20 3 5 0.20 1 0 0 1 0 0
.................................................................................................................................................................................................................................................................AATTTTAGTTGTCGTGAA.......................................................................................................................... 18 2 6 0.17 1 0 0 1 0 0
.........................................................................................................................................................................................................................................AAGGAAAACGAAGTGGTA.................................................................................................................................................. 18 1 7 0.14 1 0 1 0 0 0
.........................................................................................................................................................................................................................................AAGGAAAACGAAGTGGC................................................................................................................................................... 17 1 7 0.14 1 1 0 0 0 0
.........................................................................................................................................................................................................................................AAGGAAAACGAAGTGATAA................................................................................................................................................. 19 2 10 0.10 1 0 1 0 0 0
........TTGGGATTAATGAAA...................................................................................................................................................................................................................................................................................................................................................................................... 15 1 20 0.10 2 0 0 0 2 0
.........................................................................................................................................................................................................................................AAGGAATACGAAGTGG.................................................................................................................................................... 16 1 11 0.09 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................ATTTTTATTTTCGTGA........................................................................................................................... 16 1 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

TCGTTCGGAACCGTAATTACTTTTGTACATATTTTACCAATTTTATAGACCATTTTCTTAGTTTTTGATCGTTGACTGCATCATCGGTTAACGCTAAGGGTCACTTTGACAATATCTTATACTCCGTCAAGTCTTTTTTGATAAGCTGTTAAATTGACAATGTCTTTTATTTTGCTAATTCCTTTTCGATCGTCTTACACTCTGTTAACTACTTTTTTAATTTACTTCAATTATTCCTTTTGCTTCACCTTTTATATTTAAAATTAAAAGCACTTAGGTAATCACGTTAAATTTAAAAATTCTTACGGATACCGCAACACAAATATTCTGATCAGTTCTTCATGGACGCTAAAAAATAGTGGTTCTTTACTTAATATCGTCTACTGTTCCCAAAAAT
**************************************************...............(((((.....(((((((..(((((((((((.......((((.(((((.((.....)).)))))))))...........))).))))....((((((...........................)))))).........((.(((((......))))).))..........(((..((((((...(((((....)))))...))))))...)))..(((.(((.(((((....)))))..)))))))))).))))))).......))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
.................................................................................................................................AGTCTTTTCTGATAAG............................................................................................................................................................................................................................................................ 16 1 3 4.67 14 0 0 7 7 0 0 0 0 0
..............................................................................................................................................AAGCTGTTAAATTGACAATGTCTTTTAT................................................................................................................................................................................................................................... 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.................................................................................CATCGGTTAACGCTAAGGGTCACTT................................................................................................................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 1 1 0 0
..................................................................................................................................................................................................................................TCAATTATTCCTTTTGCTTCACCTTTT................................................................................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................................................................ATATCTTATACTCCGTCAAGTCTTTT.................................................................................................................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.....CGGAACCGTAATTACTTTTGTACAT............................................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................CGGTTAACGCTAAGGGTCACTTTGACA.............................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................AACGCTAAGGGTCACTTTGACAATAT.......................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................AGACCATTTTCTTAGTTTTTGATCGT..................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................ATATCTTATACTCCGTCAAGTCTTTTT................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................TTTGATAAGCTGTTAAATTGACAA............................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................CTTATACTCCGTCAAGTCTTTTTT.................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................TGACAATGTCTTTTATTTTGCTAATT......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTTCGATCGTCTTACACTCTGTTAACTACT........................................................................................................................................................................................ 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................AAGCTGTTAAATTGACAATGTCTTTT..................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................AGACAATTTTCTTAGTTTTTGATCGT..................................................................................................................................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............AATTACTTTTGTACATATTTTACCAATT................................................................................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................................................TCATATACTCCGTCAAG.......................................................................................................................................................................................................................................................................... 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................AACGCTAAGGGTCACTTTGACAATATCT........................................................................................................................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................AGGGTCACTTTGACAATATCTTATACT.................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................AGTCTTTTCTGATAAGTT.......................................................................................................................................................................................................................................................... 18 2 13 0.77 10 0 0 6 0 0 0 0 4 0
...............................................................................................................................................AGCCGTTAAATTGACA.............................................................................................................................................................................................................................................. 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................AGTCTTTTCTGATAAGT........................................................................................................................................................................................................................................................... 17 2 19 0.21 4 0 0 1 1 0 0 0 2 0
.....................................................................................................................................TATTTTGATAAGCTGTT....................................................................................................................................................................................................................................................... 17 1 6 0.17 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................TTTTTTGTTAAGCTG......................................................................................................................................................................................................................................................... 15 1 20 0.15 3 0 3 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................GCACTTAAGAAGTCACGTTAA........................................................................................................... 21 3 9 0.11 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................TTTTTAGATAAGCTGTTAACTT.................................................................................................................................................................................................................................................. 22 2 9 0.11 1 1 0 0 0 0 0 0 0 0
.........GTCGTAATTACTTTTGTA.................................................................................................................................................................................................................................................................................................................................................................................. 18 2 18 0.11 2 0 0 0 0 0 0 0 0 2
...........................................................................................................................................................................................................................................................................GAGCACTTAAGTTATCACG............................................................................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0
................................................................................................................................CAGTCTTTTCTGATAAG............................................................................................................................................................................................................................................................ 17 2 13 0.08 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TCCTTTTGCTTCACC.................................................................................................................................................... 15 0 15 0.07 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................AGTCTTTTCTGATAA............................................................................................................................................................................................................................................................. 15 1 16 0.06 1 0 0 0 0 0 0 0 1 0
........................................................................TGACTGCTTCATCGGTC.................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................................................................................................AGTGGTTCTTTAGTT......................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_3006:9188-9584 - dsi_17470 AGCAAGCCTTGGCATTAATGAAAAC-------ATGTATAAAATGGTTAA-AA------TATCTG-----------------------------------------------------------------GTAAAA-----GAATCAAAAACTAGCAACTGACGTAGTAGCCAATTGCGATTCCCAGTGAA--------------------------------ACTGTTATAGAATATGAGGCAGTTCAGAA-AAAACT---ATTCG-----ACAATTTAACTGTT--------------------------------------------------A--------CAGAA------------AATAAAACGATTAAGGAAAAGCTAG-----------------------------------------------------------------------------------------------------------------------------------CAGAATGTGAGACAATTGATGAAAAAA------TTAAATGAAGTTAATAAGGAAAACGAAGTGGAAAATATAAATTTTAATTTTCGTGAATCCATTAGTGCAATTTAAATTTTTAAGAATGCCTATGGCGTT----------------GTGTTTATAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAGT----CAAGAAGTACCTGCGATTTTTTATCACCAAGA--AATGAATTATAGCAGATGACAAGGGTTTTTA
droSec2 scaffold_65:158755-159151 + AGCAAGCCTTGGCATTAATGAAAAC-------ATGTATAATATGGTTAA-AA------TATCTG-----------------------------------------------------------------GTAAAA-----GAATCAAAAACTAGCAACTGCCGTTGTAGCCAATTGCGATTCCCAGTGAA--------------------------------ACTGTTATAGAATATGAGGAAGTTCAGAA-AAAAAT---ATTCG-----ACAATTTAACTGTT--------------------------------------------------C--------CAGAA------------AATAAAACGATTAAGGAAAAGCTAG-----------------------------------------------------------------------------------------------------------------------------------CAGAATGTGAGACAATTGATGAAAAAA------TTAAATGAAGTTAATAAGGAAAACGAAGTGGAAAATATAAATTTTAATTTTTGTGAATCCATTAGTGCAATTAAAATTTTTAAGAATGCCTATGGCATT----------------GTGTTTATAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAGT----CAAGAAGTACCTGCGATTTTTTATCACTAAGA--AATGAATTATAGCAGATAACAAGGGTTTTTA
dm3 chrU:147077-147223 + CTTAATAAAT-------------ATACTAA--A---------TAATTAA-A--------------------------GGAAGTAAAATATAAATTATTATAACTACTGTAATTTAAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATTTTTCAAAAAGAAGACAT-----------------------------------------------------------------------------------------------------------------------------------TACATTGAGAAATAAATATTTCATAA----------------------AAATAAGACGAAGTAGAAAATATAAATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4670:91045-91246 - AATTGAGACGAGCA-AATTAATTAA-------A---------GAATTAA-A--------------------------GAAATTTAAAAAAAATTAAAGAAA--------AATTAAAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATTAGGAAAGAAAAAAAAATAA-------------ATTTAAT----TAAAGTTAGAAACCGAAACCTTA------------------------------AATGGAATTA-ATATATTGAATGGTTTAAA-------------------------------------------------------------------AATTAAAGAAACCAAATGGAAAAAATAAACTGTAGTTAACGTAATTACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2L:10875442-10875906 + ACTGATCGTAGGATTTAGTGAAACA-------ACGTCCAAA----------------------------------------------------------TCAGACGTCCAATACAAAGGAGTCGACGTTGGAGGCGTCGGAAATCAACAACTAGCAACTGCCGTAGTGTACAATTGA--A-TCCAGTGAA--------------------------------AA-GTTGCGGAACATGAGACTGTTAAGAA-AAAACT---TTTAG-----AAAACGCAACTGTT--------------------------------------------------A--------CGGAA------------TATGAG----------------------------------------------ACTGTTAGAAAGTTCCACTGTTACGAAATATGTGAATGAGGAAAATTT---------------TTT-------------------TTAGAAAATTAAACTGTTACAGAAAATGAAACAATTGATAAAAAAAATGTTATTAAATGAAGTTACTAAGGAA-ACGACAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCTCAAAGAAAATTCATACTAAACTTATGTTAAACGAA--AAGTTCACCATAAAAAATGAAGAAATTGTTACATCATAAATGTTTAGC----TCATAAGAAACCAGGATC-CTTATCGTCAGGATAGCCGAATTGTAGTAGGTTGGTAGAG------
droEug1 scf7180000409171:58036-58419 + AGACACCCTTGACACTATTAAGAAT-------AGTGATCATAGTATTTACAAAAAG-----AACTCCGTCT---------------------------GTCACACCTGCAACTTGAACCTGTTGTGTGGGACGGA-----GGGGCAACGACATGCAATGGCTGAGTTGTC-AGATGC--T-TTTTGTACGGATTGCCT---------AACTAAAAATAAGAC--------------------TGTTAAGAA-ACAATT---GTCAG-----AAAAAGAGACTGTT-----------------------------------------------A-----------GAAAAAAACTTTTAGGAAAAGAGATTATTAAGGAGC--------------------------------AACTGTTAGGAAATGAAATTGTTAAGGAGCAACTGGTAGGAGAAGAGACTGTTAA-GAGCCGA-CTG-------------------TTAGGAAATGAAATTGTTA------------------AGGAGCAAC-TGGTAGGAGAAGAGACTGTTAAGAACCG----------------------------------ACTGTTAG--GAAATAAAACTTTTGAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000299951:3090-3384 + AGACACCCTTGACACTATTGAGAAT-------AGTGTTTGTAGTATTTACAAAAAG-----AACTCCGTCT---------------------------GTCACACCTGCAACTTGAACCTGTTGTGTGGGACGAA-----GGCGCAACGACATGCAATGGCTGAGTTCTC-AGATGC--T-TTTTGTACGGATTTCAC---------AACTAAAAATAAGAC--------------------TGTTAA-----CAATT---GGTAG-----AA----------------------------------------------------------------------------------------GAAAAGATTATTAAGGAGA--------------------------------AACTGTTAGGAAATGAGATTGTT------------------------------AA-GGAGTAA-CTATT-----------AGGAAATTTGGAAATGAGATTGTTA------------------AGGAGCAAC-TGTTAGGAAATGAGATTGTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414255:13720-14103 + AGACACCCTTGACCCTATTAAGGAT-------AGAAATGGTAGTATTAACAAAAAG-----AACACCGTCT---------------------------CTGACACCTGCAACTTGAACCTGCTGTGTGGGACGAA-----GGGTCAACGACATGCAATGGCTGAGTTATC-AGATGA--T-TTTTGTACGGATTGCCA---------GACTAAGAACGAGAC--------------------TGTTAAGGA-TAAACT---TTTAG-----GAAACGAGACTGTT-----------------------------------------------A-----------AGGAACAATTGGTAGAAGAAGAGACTGTTAAGGAGC--------------------------------AACTGTTAGGAAATGAGACTGCTAAGAAACAATTGGAAGAGGATGAGACTGTTAA-GAAGCAA-CTG-------------------TCAGGAAATAAGACTGTTA------------------AGGAGCAAC-TGGTAGGAGAAGAGACCGTTAAGAACCG----------------------------------ACTGTTAG--GAATTGAAACTTTTAGGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000487038:1087-1421 - CGACACTCTTGAAACTTATGGAAAT-------ATTAATGACTTATTAAA-AA------TAGATG----------------------------------------CCCATGGCTCAAACCTAACACCTGGGAAAAA-----GGATCAACAACTAGCAATTACCGCAGAAGCCAACTGCGAT-TCCAACGAGAATT------------------TTAACGAGAC--------------------CGTTAGGGA-AAAATC---TTTAG-----AAAATGAAACGACT-----------------------------------------------GGCGAAAAAGTT-----------TGTAAA------------AATGAAA--------------------------------AACTGTTAGGAAAGGCAACTGTTAATGAAAAACTGTTAGGAAAGGAAACTGTTAA-TCAAAAA-TTG-------------------TTAGGAAATACAACTGATA------------------ATGCAAAGT-TTTTAGAAAATGAATTCATTAATGGA----------------------------------------------------AAATGGTTAAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000780062:263700-264091 + AGACACCCTTGACACTATTAAGGAT-------AGTAGTTGTAATATTAACAAA-AT-----AACTCACTGT---------------------------CTCACACTTGCAACTTGAACCTTTATTGTGGAACGAA-----GGATCAACGACATAGAATGGCTGATTTATC-TGAAGA--T-GTTTGTACGGATTGTCTAGGACATTTAACTGGAAATGAAAC--------------------TTTTAAGGA-GCAACT---GTTAG-----GAAATGAAACTGTT-----------------------------------------------A-----------AGGAGCAACTGTTAGGAAATGAAACTGTTAAGGAGC--------------------------------AACTGTTAGGAAATGAAACTGTTAAAGAGCAACTGTTAGGAAATAAGACTGTTAG-GGAACAA-TTA-------------------ATGGAAGGAGATACTGTTG------------------AGAAGCAAC-TCGTAGGAGAAGAGACTGTTAAGAACCA----------------------------------ACTATTAG--AAAATAAAACTTTTAAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453573:1695-2062 + AGTGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAATATGGAATGTGAAAATGTAG----------------------------------------------------------------------------------------------------AA------------AACAAATTGATTGACAAACCGTTAG--CAGAAAATTATTTGTTAGATAGGAAATTATTAGATAAT-AGATTGTTAGACAG-------------------------------------------------------------------------------------------TAGATTG--------------------------------------TTGGAATAAATACACTTC---GTTTGTGACGCCATTGGGTCAATATAAATTTCTAAAAATGCCCATGGGGCTTAAAACTGCTCCTCAAGTATTTCAAAGATTTGTTAATACTATATTTGCAGACATGATTAGAGAAAATGAGGTTATAGTTTATATGGATGATATAATATAAAGGTCGCAAGCAAAGATATAGATGAACA------------------------------------------------------------------------------------------------------------TTTTGCAATTTTGCAAT-CTAAAG--GTAGTATTCGAGCTGATGATAAGGGCTTAGA
droKik1 scf7180000301547:9726-10043 + AGACACCCTCGACATTAATAGAGAT-------ATTAATAATATAATTAA-AG------C----------------------------------------------------------------ATATGGGGAAAA-----GGATAAACAACTACCAACTGCCGTAATAGCCAATGGCGAT-CCCAGCGAA--------------------------------ACTGTGATAGAAAATGAAACGGTTATGAA-AAAACT---GTTGG-----GGAATTCAACTCTT--------------------------------------------------A--------CGAAA------------AATGCAACTGTTAAGGAAA--------------------------------AATCTTTAGAGAATGAAACTGTTAAAGAAAAATTGTTAGAAAATGCAACTGTTAA-GGAAAATTTTT-------------------TTAGAAAATGCAACTTTTA------------------CGGAAAAAT-TTTTAGAAAATGCAACTGTTAAGGAA----------------------------------------------------AAATTTTTAGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_7639:67-126 + GAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAGGTTATACGATTACAGGGA--GTGGAATTAAAGCTGATGAGAAAGGTATAGA
droPer2 scaffold_2686:1268-1351 - TTAATG--AGG------------GAATCAG--A---------T-ATTGA----AAA-----AACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---TTTTTCCATAAATAACGGCAAATATGAATTTCTAAGAATGCCTATGGGATT----------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004949:1498466-1498582 + ATTAGTTCAGAACA-AATTGAGGTT-------AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGGATAAGTGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTTT--------------TTATGTCAAGCATAAAGTACCTGGGCTACAAAATAACGGAGA--ATGGAATT---GCAGATGATAAGGGCTTAGA
droVir3 scaffold_12967:72818-73209 + AGATTA--TAGGAAGCAACAAGCAA-----CTATAAATGAAACAGTT----------------------------------------------------------------------------------------------------------------------------ACTCAAACA-ATTAGTGAACAAT------------------CAAATGAAAC--------------------AGTTAGTAA-ACAATC--------------AAATGAAACAGTT-----------------------------------------------GGTAAAACAGTT-----------AGAGAACAATCAAATAAGAAGAAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTATTTCAATGGTTTGTAAATAAAATATTTGCAGATTTAATTAGAGAGAATCGGGTAATTGTATATATAGATGATATAAT-----GATAGCAACCGAAAACATGGACGAACATTTGGAAACCTTAAAAGAAGTATTTAATAGATTGGTACAAAACAAGTTAGAATTACGGATGGAAATGTGAA-TTTA--------------TGCAGTCAAGTATTAAATATTTAGGCTT-TTAATAGCAAATG--AAGGCATAAGAGCGGATGAAAAGGGAATATA
droMoj3 scaffold_6500:4974769-4975089 + CTTTGGGCT------AAATGAAAGC-------CAGTTAAATGTGATTGG----AAAAACATTTGTTCATATTTTCAAG-------------------------------------------AAGTTTGAGAAAAT-----AAATTT-------------------TTGGTTAATAGTTGTCCCTGATGAA--------------------------------TCT---ATGAGGTCTGAAGTAATTTTAGGGAGAGATTTCATGGAAGCTTGCAATTTA-----TATGTTGACCCAATCGCCTTGAGAATGATTTCAGTGGAAAGAGCAGCTGGCA--------CGTTA------------GAT---------------A--------------------------------AATCGTTAGAAAAT-ACATTGTTAGGAAACAC---------------ATCGTTAG-----------------------------------------------------------------------ATAAAT-CGTTAGAAAAT---------------A----------------------------------CGCCGTTAGGACAGTTTGAGTTCTTGAGAATGCCTATGGGATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCAAGCCTTGGCATTAATGAAAAC-------ATGTATAAAATGGTTAA-AA------TATCTG-----------------------------------------------------------------GTAAAA-----GAATCAAAAACTAGCAACTGACGTAGTAGCCAATTGCGATTCCCAGTGAA--------------------------------ACTGTTATAGAATATGAGGCAGTTCAGAA-AAAACT---ATTCG-----ACAATTTAACTGTT--------------------------------------------------A--------CAGAA------------AATAAAACGATTAAGGAAAAGCTAG-----------------------------------------------------------------------------------------------------------------------------------CAGAATGTGAGACAATTGATGAAAAAA------TTAAATGAAGTTAATAAGGAAAACGAAGTGGAAAATATAAATTTTAATTTTCGTGAATCCATTAGTGCAATTTAAATTTTTAAGAATGCCTATGGCGTT----------------GTGTTTATAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAGT----CAAGAAGTACCTGCGATTTTTTATCACCAAGA--AATGAATTATAGCAGATGACAAGGGTTTTTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAAACGAAGTGG.........................................................................................................................................................................................................................................................................................................................................................................1662.001200000013008000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAAACGAAGTG..........................................................................................................................................................................................................................................................................................................................................................................1571.00700000000007000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAAACGAAGTGGC........................................................................................................................................................................................................................................................................................................................................................................1770.14100000000001000000
droSec2
AGCAAGCCTTGGCATTAATGAAAAC-------ATGTATAATATGGTTAA-AA------TATCTG-----------------------------------------------------------------GTAAAA-----GAATCAAAAACTAGCAACTGCCGTTGTAGCCAATTGCGATTCCCAGTGAA--------------------------------ACTGTTATAGAATATGAGGAAGTTCAGAA-AAAAAT---ATTCG-----ACAATTTAACTGTT--------------------------------------------------C--------CAGAA------------AATAAAACGATTAAGGAAAAGCTAG-----------------------------------------------------------------------------------------------------------------------------------CAGAATGTGAGACAATTGATGAAAAAA------TTAAATGAAGTTAATAAGGAAAACGAAGTGGAAAATATAAATTTTAATTTTTGTGAATCCATTAGTGCAATTAAAATTTTTAAGAATGCCTATGGCATT----------------GTGTTTATAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAGT----CAAGAAGTACCTGCGATTTTTTATCACTAAGA--AATGAATTATAGCAGATAACAAGGGTTTTTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CTTAATAAAT-------------ATACTAA--A---------TAATTAA-A--------------------------GGAAGTAAAATATAAATTATTATAACTACTGTAATTTAAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATTTTTCAAAAAGAAGACAT-----------------------------------------------------------------------------------------------------------------------------------TACATTGAGAAATAAATATTTCATAA----------------------AAATAAGACGAAGTAGAAAATATAAATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
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droEre2
AATTGAGACGAGCA-AATTAATTAA-------A---------GAATTAA-A--------------------------GAAATTTAAAAAAAATTAAAGAAA--------AATTAAAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATTAGGAAAGAAAAAAAAATAA-------------ATTTAAT----TAAAGTTAGAAACCGAAACCTTA------------------------------AATGGAATTA-ATATATTGAATGGTTTAAA-------------------------------------------------------------------AATTAAAGAAACCAAATGGAAAAAATAAACTGTAGTTAACGTAATTACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
ACTGATCGTAGGATTTAGTGAAACA-------ACGTCCAAA----------------------------------------------------------TCAGACGTCCAATACAAAGGAGTCGACGTTGGAGGCGTCGGAAATCAACAACTAGCAACTGCCGTAGTGTACAATTGA--A-TCCAGTGAA--------------------------------AA-GTTGCGGAACATGAGACTGTTAAGAA-AAAACT---TTTAG-----AAAACGCAACTGTT--------------------------------------------------A--------CGGAA------------TATGAG----------------------------------------------ACTGTTAGAAAGTTCCACTGTTACGAAATATGTGAATGAGGAAAATTT---------------TTT-------------------TTAGAAAATTAAACTGTTACAGAAAATGAAACAATTGATAAAAAAAATGTTATTAAATGAAGTTACTAAGGAA-ACGACAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCTCAAAGAAAATTCATACTAAACTTATGTTAAACGAA--AAGTTCACCATAAAAAATGAAGAAATTGTTACATCATAAATGTTTAGC----TCATAAGAAACCAGGATC-CTTATCGTCAGGATAGCCGAATTGTAGTAGGTTGGTAGAG------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGTTACTAAGGAA-ACG...............................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEug1
AGACACCCTTGACACTATTAAGAAT-------AGTGATCATAGTATTTACAAAAAG-----AACTCCGTCT---------------------------GTCACACCTGCAACTTGAACCTGTTGTGTGGGACGGA-----GGGGCAACGACATGCAATGGCTGAGTTGTC-AGATGC--T-TTTTGTACGGATTGCCT---------AACTAAAAATAAGAC--------------------TGTTAAGAA-ACAATT---GTCAG-----AAAAAGAGACTGTT-----------------------------------------------A-----------GAAAAAAACTTTTAGGAAAAGAGATTATTAAGGAGC--------------------------------AACTGTTAGGAAATGAAATTGTTAAGGAGCAACTGGTAGGAGAAGAGACTGTTAA-GAGCCGA-CTG-------------------TTAGGAAATGAAATTGTTA------------------AGGAGCAAC-TGGTAGGAGAAGAGACTGTTAAGAACCG----------------------------------ACTGTTAG--GAAATAAAACTTTTGAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGACACCCTTGACACTATTGAGAAT-------AGTGTTTGTAGTATTTACAAAAAG-----AACTCCGTCT---------------------------GTCACACCTGCAACTTGAACCTGTTGTGTGGGACGAA-----GGCGCAACGACATGCAATGGCTGAGTTCTC-AGATGC--T-TTTTGTACGGATTTCAC---------AACTAAAAATAAGAC--------------------TGTTAA-----CAATT---GGTAG-----AA----------------------------------------------------------------------------------------GAAAAGATTATTAAGGAGA--------------------------------AACTGTTAGGAAATGAGATTGTT------------------------------AA-GGAGTAA-CTATT-----------AGGAAATTTGGAAATGAGATTGTTA------------------AGGAGCAAC-TGTTAGGAAATGAGATTGTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGACACCCTTGACCCTATTAAGGAT-------AGAAATGGTAGTATTAACAAAAAG-----AACACCGTCT---------------------------CTGACACCTGCAACTTGAACCTGCTGTGTGGGACGAA-----GGGTCAACGACATGCAATGGCTGAGTTATC-AGATGA--T-TTTTGTACGGATTGCCA---------GACTAAGAACGAGAC--------------------TGTTAAGGA-TAAACT---TTTAG-----GAAACGAGACTGTT-----------------------------------------------A-----------AGGAACAATTGGTAGAAGAAGAGACTGTTAAGGAGC--------------------------------AACTGTTAGGAAATGAGACTGCTAAGAAACAATTGGAAGAGGATGAGACTGTTAA-GAAGCAA-CTG-------------------TCAGGAAATAAGACTGTTA------------------AGGAGCAAC-TGGTAGGAGAAGAGACCGTTAAGAACCG----------------------------------ACTGTTAG--GAATTGAAACTTTTAGGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGACACTCTTGAAACTTATGGAAAT-------ATTAATGACTTATTAAA-AA------TAGATG----------------------------------------CCCATGGCTCAAACCTAACACCTGGGAAAAA-----GGATCAACAACTAGCAATTACCGCAGAAGCCAACTGCGAT-TCCAACGAGAATT------------------TTAACGAGAC--------------------CGTTAGGGA-AAAATC---TTTAG-----AAAATGAAACGACT-----------------------------------------------GGCGAAAAAGTT-----------TGTAAA------------AATGAAA--------------------------------AACTGTTAGGAAAGGCAACTGTTAATGAAAAACTGTTAGGAAAGGAAACTGTTAA-TCAAAAA-TTG-------------------TTAGGAAATACAACTGATA------------------ATGCAAAGT-TTTTAGAAAATGAATTCATTAATGGA----------------------------------------------------AAATGGTTAAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGACACCCTTGACACTATTAAGGAT-------AGTAGTTGTAATATTAACAAA-AT-----AACTCACTGT---------------------------CTCACACTTGCAACTTGAACCTTTATTGTGGAACGAA-----GGATCAACGACATAGAATGGCTGATTTATC-TGAAGA--T-GTTTGTACGGATTGTCTAGGACATTTAACTGGAAATGAAAC--------------------TTTTAAGGA-GCAACT---GTTAG-----GAAATGAAACTGTT-----------------------------------------------A-----------AGGAGCAACTGTTAGGAAATGAAACTGTTAAGGAGC--------------------------------AACTGTTAGGAAATGAAACTGTTAAAGAGCAACTGTTAGGAAATAAGACTGTTAG-GGAACAA-TTA-------------------ATGGAAGGAGATACTGTTG------------------AGAAGCAAC-TCGTAGGAGAAGAGACTGTTAAGAACCA----------------------------------ACTATTAG--AAAATAAAACTTTTAAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGTGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAATATGGAATGTGAAAATGTAG----------------------------------------------------------------------------------------------------AA------------AACAAATTGATTGACAAACCGTTAG--CAGAAAATTATTTGTTAGATAGGAAATTATTAGATAAT-AGATTGTTAGACAG-------------------------------------------------------------------------------------------TAGATTG--------------------------------------TTGGAATAAATACACTTC---GTTTGTGACGCCATTGGGTCAATATAAATTTCTAAAAATGCCCATGGGGCTTAAAACTGCTCCTCAAGTATTTCAAAGATTTGTTAATACTATATTTGCAGACATGATTAGAGAAAATGAGGTTATAGTTTATATGGATGATATAATATAAAGGTCGCAAGCAAAGATATAGATGAACA------------------------------------------------------------------------------------------------------------TTTTGCAATTTTGCAAT-CTAAAG--GTAGTATTCGAGCTGATGATAAGGGCTTAGASizeHit CountTotal NormTotal
No Reads
droKik1
AGACACCCTCGACATTAATAGAGAT-------ATTAATAATATAATTAA-AG------C----------------------------------------------------------------ATATGGGGAAAA-----GGATAAACAACTACCAACTGCCGTAATAGCCAATGGCGAT-CCCAGCGAA--------------------------------ACTGTGATAGAAAATGAAACGGTTATGAA-AAAACT---GTTGG-----GGAATTCAACTCTT--------------------------------------------------A--------CGAAA------------AATGCAACTGTTAAGGAAA--------------------------------AATCTTTAGAGAATGAAACTGTTAAAGAAAAATTGTTAGAAAATGCAACTGTTAA-GGAAAATTTTT-------------------TTAGAAAATGCAACTTTTA------------------CGGAAAAAT-TTTTAGAAAATGCAACTGTTAAGGAA----------------------------------------------------AAATTTTTAGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAGGTTATACGATTACAGGGA--GTGGAATTAAAGCTGATGAGAAAGGTATAGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTACAGGGA--GTGGAATTAAAGC..................27150.132200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTTATACGATTACAGGGA--G..............................22150.071100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGATTACAGGGA--GTGGAAT........................22150.071100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATACGATTACAGGGA--GTGGA..........................24150.071100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGATTACAGGGA--GTGGAATTAA.....................26150.071100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGGTTATACGATTACAGGGA--GT.............................25150.071010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATACGATTACAGGGA--GTGG...........................23150.071100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACGATTACAGGGA--GTGGAAT........................25150.071100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGATTACAGGGA--GTGGAATT.......................24150.071100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGGTTATACGATTACAGGG..................................23150.071100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTACAGGGA--GTGGAATTAAAGCT.................28150.071100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGATTACAGGGA--GTGGAATTTG.....................26150.071100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTTATACGATTACAGGGA--GTGGA..........................26150.071100000
droPer2
TTAATG--AGG------------GAATCAG--A---------T-ATTGA----AAA-----AACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---TTTTTCCATAAATAACGGCAAATATGAATTTCTAAGAATGCCTATGGGATT----------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGGCAAATATGAATTTCTAAGAA..................................................................................................................................................................................................................................................................................................................26200.051100000
droWil2
ATTAGTTCAGAACA-AATTGAGGTT-------AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGGATAAGTGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTTT--------------TTATGTCAAGCATAAAGTACCTGGGCTACAAAATAACGGAGA--ATGGAATT---GCAGATGATAAGGGCTTAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................T-------AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGGATAAGTGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTTT--------------...........................................................................2450.40202000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ATGGAATT---GCAGATGATAAGGGCTT...2630.33100010
.................................C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGGATAAGTGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTTT--------------TTATGT.....................................................................2850.20100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAAAGTACCTGGGCTACA.............................................21100.20202000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAAAGTACCTGGGCTACAAAAT.........................................25100.10101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGCATAAAGTACCTGGGCT................................................23100.10101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCAAGCATAAAGTACCTGGG..................................................23100.10101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCATAAAGTACCTGGGCTACAAAAT.........................................28100.10101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCATAAAGTACCTGGG..................................................19100.10101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTACCTGGGCTACAAAAT.........................................20110.09101000
droVir3
AGATTA--TAGGAAGCAACAAGCAA-----CTATAAATGAAACAGTT----------------------------------------------------------------------------------------------------------------------------ACTCAAACA-ATTAGTGAACAAT------------------CAAATGAAAC--------------------AGTTAGTAA-ACAATC--------------AAATGAAACAGTT-----------------------------------------------GGTAAAACAGTT-----------AGAGAACAATCAAATAAGAAGAAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTATTTCAATGGTTTGTAAATAAAATATTTGCAGATTTAATTAGAGAGAATCGGGTAATTGTATATATAGATGATATAAT-----GATAGCAACCGAAAACATGGACGAACATTTGGAAACCTTAAAAGAAGTATTTAATAGATTGGTACAAAACAAGTTAGAATTACGGATGGAAATGTGAA-TTTA--------------TGCAGTCAAGTATTAAATATTTAGGCTT-TTAATAGCAAATG--AAGGCATAAGAGCGGATGAAAAGGGAATATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAA-TTTA--------------TGCAGTCAAG.................................................................2120.501000010000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-----GATAGCAACCGAAAACATGGAC..........................................................................................................................................................................2520.501100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGAAGTATTTAATAGAT.....................................................................................................................................2120.501000000000000000000000000000000000000010000000000000000000000000
droMoj3
CTTTGGGCT------AAATGAAAGC-------CAGTTAAATGTGATTGG----AAAAACATTTGTTCATATTTTCAAG-------------------------------------------AAGTTTGAGAAAAT-----AAATTT-------------------TTGGTTAATAGTTGTCCCTGATGAA--------------------------------TCT---ATGAGGTCTGAAGTAATTTTAGGGAGAGATTTCATGGAAGCTTGCAATTTA-----TATGTTGACCCAATCGCCTTGAGAATGATTTCAGTGGAAAGAGCAGCTGGCA--------CGTTA------------GAT---------------A--------------------------------AATCGTTAGAAAAT-ACATTGTTAGGAAACAC---------------ATCGTTAG-----------------------------------------------------------------------ATAAAT-CGTTAGAAAAT---------------A----------------------------------CGCCGTTAGGACAGTTTGAGTTCTTGAGAATGCCTATGGGATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTTGAGAATGCCTATGGG........................................................................................................................................................................................................................................................................................................23201.60323010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTTGAGAATGCCTATGGGA.......................................................................................................................................................................................................................................................................................................24200.90181200042
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTTGAGAATGCCTATGG.........................................................................................................................................................................................................................................................................................................22200.459800010
..............................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTAGAAAAT-ACATTGTTAGGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.306600000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGTTTGAGTTCTTGAGAATGCC..............................................................................................................................................................................................................................................................................................................25200.255300020
..............................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTAGAAAAT-ACATTGTTAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.204400000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTTGAGAATGCCTATG..........................................................................................................................................................................................................................................................................................................21200.204400000
........................................................................................................................................................................................GATGAA--------------------------------TCT---ATGAGGTCTGAAGTAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.204100003
...................................................................................................................................................................................................................................................................................................................AATGATTTCAGTGGAAAGAGCAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.193100020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTTGAGAATGCCTATGGGATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------26200.153300000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGTTTGAGTTCTTGAGAATGCCT.............................................................................................................................................................................................................................................................................................................26200.153100020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTTGAGAATGCCTATGGGAT......................................................................................................................................................................................................................................................................................................25200.153200010
........................................................................................................................................................................................................................................................................GAAGCTTGCAATTTA-----TATGTTGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153200010
........................................................................................................................................................................................GATGAA--------------------------------TCT---ATGAGGTCTGAAGTAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102200000
........................................................................................................................................................................................GATGAA--------------------------------TCT---ATGAGGTCTGAAGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTAGAAAAT-ACATTGTTAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000020
........................................................................................................................................................................................GATGAA--------------------------------TCT---ATGAGGTCTGAAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102200000
..............................................................................................................................................................................................................................................................................................................TTGAGAATGATTTCAGTGGAAAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102000011
...........................................................................................................................................................................................GAA--------------------------------TCT---ATGAGGTCTGAAGTAATTTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27150.071100000
.........................................................................................................................................................................................................................................GTCTGAAGTAATTTTAGGGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.071000001
......................................................................................................................................................................................................................................GAGGTCTGAAGTAATTTTAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.071100000
.........................................................................................................................................................................................................................................GTCTGAAGTAATTTTAGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.071100000
.....................................................................................................................................................................................................................................................................................................................TGATTTCAGTGGAAAGAGCAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23160.061000001
...................................................................................................................................................................................................................................................................................................................AATGATTTCAGTGGAAAGAGCAGCTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28160.061100000
.................................................................................................................................................................................................................................................................................................................................AAAGAGCAGCTGGCA--------CGTTA------------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.061000100
.....................................................................................................................................................................................................................................................TTTAGGGAGAGATTTCATGGAAGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26170.061100000
.........................................................................................................................................................................................................................................................................................................................TTCAGTGGAAAGAGCAGCTGGCA--------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.061100000
..........................................................................................................................................................................................................................................................................................................................................CTGGCA--------CGTTA------------GAT---------------A--------------------------------AATCGTTAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26170.061000001
.....................................................................................................................................................................TTGGTTAATAGTTGTCCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.061100000
..............................................................................................................................................................................AGTTGTCCCTGATGAA--------------------------------TCT---ATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24180.061100000
...............................................................................................................................................TTT-------------------TTGGTTAATAGTTGTCCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22180.061000010
.................................................................................................................................................................................TGTCCCTGATGAA--------------------------------TCT---ATGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20190.051100000
.........................................................................................................................................................................................................................................................................................................................................................GTTA------------GAT---------------A--------------------------------AATCGTTAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGTTTGAGTTCTTGAGAATGC...............................................................................................................................................................................................................................................................................................................24200.051000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTTGAGAATGCCTATGGGAT......................................................................................................................................................................................................................................................................................................24200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTAGAAAAT-ACATTGTTAGGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000010
........................................................................................................................................................................................GATGAA--------------------------------TCT---ATGAGGTCTGAAGTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTTAGGAAACAC---------------AT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
..............................................TGG----AAAAACATTTGTTCATATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
..............................................TGG----AAAAACATTTGTTCATATTTTCAAG-------------------------------------------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051100000
........................................................................................................................................................................................................................................................................GAAGCTTGCAATTTA-----TATGTTGACCCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051100000
...................................................................................................................................................................................................................................................................................................................AATGATTTCAGTGGAAAGAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTAG-----------------------------------------------------------------------ATAAAT-CGTTAGAAA....................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
.............................................................................................................................................................................................................................................................GAGATTTCATGGAAGCTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
....................................................................................................................................................................................................................................................................................................................ATGATTTCAGTGGAAAGAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.........................................................ACATTTGTTCATATTTTCAAG-------------------------------------------AAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTGAGTTCTTGAGAATGC...............................................................................................................................................................................................................................................................................................................21200.051100000
........................................................................................................................................................................................................................................................................GAAGCTTGCAATTTA-----TATGTTGACCCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTCTTGAGAATGCCTATGGG........................................................................................................................................................................................................................................................................................................25200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTTGAGAATGCCTATGGG........................................................................................................................................................................................................................................................................................................22200.051100000
...............AAATGAAAGC-------CAGTTAAATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
........................................................................................................................................................................................................................................................................GAAGCTTGCAATTTA-----TATGTTGACCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
....................................................................................................................................................................................................................................................................CATGGAAGCTTGCAATTTA-----TATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
............................................................................................................................TTTGAGAAAAT-----AAATTT-------------------TTGGTTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTTGAGAATGCCTATGGGA.......................................................................................................................................................................................................................................................................................................23200.051100000
.........................................................................................................................................................................................ATGAA--------------------------------TCT---ATGAGGTCTGAAGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
........................................TGTGATTGG----AAAAACATTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
........................................TGTGATTGG----AAAAACATTTGTTCATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000001
.............................................................................................................................................................................................................................................................GAGATTTCATGGAAGCTTGCAATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000001
..................................GTTAAATGTGATTGG----AAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000100
..............................................TGG----AAAAACATTTGTTCATATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
...............................................................................................................................................................................................................................................................................GCAATTTA-----TATGTTGACCCAATCGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAACAC---------------ATCGTTAG-----------------------------------------------------------------------ATAAAT-.............................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
...................................................................................................................................................................................................................................................................TCATGGAAGCTTGCAATTTA-----TATGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000001
..........................................................CATTTGTTCATATTTTCAAG-------------------------------------------AAGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
........................................................................................................................................................................................GATGAA--------------------------------TCT---ATGAGGTCTGAAGTAATTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------A----------------------------------CGCCGTTAGGACAGTTTGAGTTC.........................................................................................................................................................................................................................................................................................................................25200.051000001
..................................................................................................................................................................................................................................................................................................................GAATGATTTCAGTGGAAAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000

Generated: 05/19/2015 at 05:39 AM