dsi_17459

intron [x_17108693_17110716_-]; CDS [x_17108657_17108671_-]; five_prime_UTR [x_17108672_17108692_-]; exon [x_17108657_17108692_-]; intron [x_17108007_17108656_-]

--------------####################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCTCTTACTTTCAGTAACCAAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATCGCTAACGGCACCCTTCCTACCGCCTTTGACAAACGGTTGATTAACCTTTGACCCTCTTCTACAGTTAAATATTTTGGGGCATTAATCGCAAGCACTGTTATGGAAATTGGAAGTGATTTGGACGGGATTACCACTGACTGGATGTGGATTTAGGTAAGCAGAGTTCCCGAACAATCCAGAAGCTTC ************************************************....(((((...(((((((...(((..((((.....((..(((((....(((((((((....((.((((....................)))))))))))))...))..))))).)).....)))))))..)))).)))..)))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	M024 male body	M023 head	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries
.....................AAACACAAATCAAAATGGCTG................................................................................................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0	0
.............................ATCAAAATGGCTGATGATGAGG.......................................................................................................................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0
.......................ACACAAATCAAAATGGCTGAC..............................................................................................................................................................................................................	21	1	1	1.00	1	0	0	1	0	0	0	0
......................AACACAAATCAAAATGGCTGAT..............................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
.............................ATCAAAATGGCTGATTATGAG........................................................................................................................................................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0
......................AACACAAATCAAAATGGCTG................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................GGACGGGACTAACACTGAC................................................	19	2	1	1.00	1	0	0	0	1	0	0	0
.........................ACAAATCAAAATGGCTGATGATGAGG.......................................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0
...............................CAAAATAGCTGGTGATGAGG.......................................................................................................................................................................................................	20	2	2	0.50	1	0	0	0	0	0	1	0
......................................................................................................................................................................GAAATTGGCAGTGAATTCGAC...............................................................	21	3	2	0.50	1	0	0	0	0	1	0	0
......................................................................................................................................................................................AGGACGGGACTAACACTGAC................................................	20	3	3	0.33	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................ACCGGATTGTCACTGACTG..............................................	19	3	9	0.11	1	0	0	1	0	0	0	0
........................................................................................................................................................CAAGTACAGTTATGGAAA................................................................................	18	2	16	0.06	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................GTTAACACTGACTGGA............................................	16	2	20	0.05	1	0	0	0	0	0	0	1

AGAGAATGAAAGTCATTGGTTTTTGTGTTTAGTTTTACCGACTACTACTCCACTCCACTCATAGCGATTGCCGTGGGAAGGATGGCGGAAACTGTTTGCCAACTAATTGGAAACTGGGAGAAGATGTCAATTTATAAAACCCCGTAATTAGCGTTCGTGACAATACCTTTAACCTTCACTAAACCTGCCCTAATGGTGACTGACCTACACCTAAATCCATTCGTCTCAAGGGCTTGTTAGGTCTTCGAAG ************************************************....(((((...(((((((...(((..((((.....((..(((((....(((((((((....((.((((....................)))))))))))))...))..))))).)).....)))))))..)))).)))..)))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.........AAGTCATTGGTTTTTGTGTTTAGTTTTA.....................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0
............................................................................GAAGGATGGCGGGAA...............................................................................................................................................................	15	1	10	0.20	2	0	0	2
.......................................................................................................................................................................................CCTGCCCTAATAGTG....................................................	15	1	6	0.17	1	0	1	0
...........................................................................GGAAGGATGGCGGGAAT..............................................................................................................................................................	17	2	13	0.08	1	0	1	0

Species	Coordinate	ID	Alignment
droSim2	x:17108457-17108706 -	dsi_17459	TCTCT--------TAC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCT---AACGGCACCCTT-------------------CCT------------ACCGCCTTTGACAAACGG-TT-GATTAAC------------CTTTGACC--CTCTTCTACAGTTAAATA---TTT-----T-------------GGGGCA-TTAATC-----GCA---------------------------AGCACTGTT-A------TGGAAATT----GGA-------------------------AGTGATTTGGACGGGATTACCAC-TG--ACTGGAT--GTGG--ATT-----TAGGTAAGCAGAG--TTCCCGAACAATC-----CAG-AAGC-TTC
droSec2	scaffold_8:313804-314053 -		TCTCT--------TAC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATA-GCT---AACGGCACCCTT-------------------CCT------------ACCGCCTATGACAAACGG-TT-GATTAAC------------CTTTGACC--CTCTTCTGCAGTTAACTA---TTT-----A-------------GGGGCA-TTAATC-----GCA---------------------------AGCACTGTT-T------TGGAAAAT----GGA-------------------------AGTGATTTGGACGGGATTACCAC-TG--ACTGGAT--GTGG--ATT-----TAGGTAAGCAGAG--TTCCCGAACAATC-----CAG-AAGC-TTC
dm3	chrX:18008444-18008693 -		TCTCT--------TAC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-TCC---AACGGCCCCCTT-------------------TCT------------ACCGCCTTTGAGAAACGG-TT-GATTAAC------------CTTTGACC--CTCTTCTTCAGTTAACTA---TTT-----T-------------GGGGCA-TTAATC-----GCA---------------------------AGCACTGTT-T------TGGAAATT----GGA-------------------------AGTGATTTGGACGGGATTAAACC-TG--ACTGGAT--GTGG--ATT-----TAGGTAAGCAAAG--CTCCCGAACAATC-----CAG-AAGC-TTC
droEre2	scaffold_4690:8336453-8336702 -		TCTCT--------TAC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCT---AACAGCCCCCTT-------------------CCC------------ACCGCCTTTTACATACGG-TT-GATTAAC------------CTTTGACC--CTCTTCCGCAGTTAACTA---TTT-----T-------------CGGGCA-TTTATC-----GCA---------------------------AGCACTGTG-T------TGGAAAAT----GGA-------------------------AGTGATTTGGACGGGGCTACCCC-TG--ACTGGAT--GTGG--ACC-----AAGGTAAGCAGAG--TTCCCGAAAGATC-----CAG-AAGC-TTC
droYak3	X:16632684-16632933 -		TCTCT--------TAC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCT---AACGGCCCCCCT-------------------CCT------------GCCGCCTTTGACATACGG-TT-GATTAAC------------CTTTGACC--CTCTTCTGCAGTTAACTA---TTT-----T-------------CGGGCA-TTTATC-----GCA---------------------------AGCACTGTG-T------TGGCAAAT----GGA-------------------------GATGATTTCGACGGGATTACCCC-TG--ACTGGAT--GTGT--ATT-----GAGGTAAGCAGAG--CTCCCGAAAGATC-----CAG-AAGC-ATC
droEug1	scf7180000408176:675067-675323 +		TCTCT--------TAC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCT---AATGGCCCACTT-------------------CAAAG----------A-CCCCACTAAGATATGG-AGTAATTAAC------------CTTTG-CC--CTCTTCTGCAGTTAACTTAAATTG-----T-------------TGGACA-TTTATG-----GCA---------------------------AGCACTGTG-A------CTGGATAT----GGA-------------------------ACTGATTTGGACGGGATTACTCTTTG--ACTGGAT--GTGG--CTAG----AAGGTAAGCAGAG--CACTTAAGAAATC-----CAAATAGC-TTT
droBia1	scf7180000301760:596646-596915 +		TCTTT--------TCC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCC---TTTGGCCCCTCC-------------------CCCT----TAACCCAACCCCCTTTGACCCATGC-GG-GATTAAC------------CTTTGGCCTCCTCCTTTGCAGTTAACTA---TTT-----T-------------TGGTGA-TATATC-----GA--ACA-----------------------ACTGCTGGT-ACCGGAAATGGAAAT----GGA-------------------------GGAGATGTGGACGGGACTAACCT-GG--ACCGGAT--CCGG--ATG-----AAGGTAAGGAGAGAGTTCCCAGCACATC-----CTT-AAGC-TTC
droTak1	scf7180000415843:469502-469751 +		TCCTT--------TCC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCT---AACCGCCACTTAACCC--------------T---T--------------------A-C---TCT-TG-GATTAAC------------CTTTGTTC--CTCCTCCGCAGTTATTTA---TTT-----T-------------CGGGATTTTGATCGAACTGTT---------------------------TGCACTGTTTA------CTGGAAAT----GGA-------------------------AGTGATTTGGACGGTACTACCCTATG--CGAGGAT--CTAG--TTG-----AAGGTAAGCCGAGTGTTCTTTGCAGATC-----CCG-AAGC-TTC
droEle1	scf7180000491193:214152-214409 -		TCTTT--------TCCCT---TTTTGCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GTT---GATGGACCCCTA-A-----------------CCA------------AACG-CTTCGATCTATGG-TG-GATTAAC------------CTTTGACC--CTCTTCCGCAGTTAACTT---TTT----AT-------------TGGAAA-TTTATC-----GCA---------------------------CGCACTGCT-A------CTGAAAAT----GGA-------------------------TGAGATTTGGACGGGACTACCCT-TG--ACTGGAC--GTGG--CTA-----AAGGTAAGCAGAT--TCCTCAA--AATTAGGATCTT-TTGC-TTC
droRho1	scf7180000779986:509225-509476 +		TTTTT--------CCC-----TTTTGCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GTT---ATTGAAACGCTC-T-----------------CCA------------ATCG-CTTTGACCTATGG-TG-GATTAAC------------CTTTGACC--TTCTTCGGCAGTTAACTA---TTT-----T-------------TGGGTA-TTGATT-----GCA---------------------------CGCACTGGC-A------CTGGAAAT----GGA-------------------------TGAGATTTGGACGGGACTACCCC-TG--ACTGGAT--GTGG--CTA-----AAGGTAAGCAGAG--TTCCCAATAGATC-----CCA-GAGC-TGC
droFic1	scf7180000453872:348888-349135 +		TCTTC--------TCC-------TTTCAGTAACC---AACAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCC---AATGGCCTCCGT-------------------T--------------ATCCCCTTTGACCTATGG-TG-GATTAAC------------CTTTAACC--CCCTTCCGCAGTTAACTG---TTT-----T-------------TGGGAA-CGATTC-----GCA---------------------------TGCACTGTC-A------CCGGAAAT----GGA-------------------------AGCGATTCGGACGGGATGCACCC-CG--ACTGGAT--GTGG--CTA-----AAGGTAAGCCGAG--TTGCCCAGAGTTG-----CAC-CACC-GCC
droKik1	scf7180000302696:1710119-1710375 -		TCCTTCTCTGTTTCAC-------TTGCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCT---CAA----------TTAG-----------------AGATC-------CCCTCCAGTGAAAACCAGTTG-GATTAACACAACATTCCACCTCCC-CCCTTTCTCCTGCAGTAAAGCA---TTA-----TATTCAC-----------------ACT-----GT--ACA-----------------------CGCACCGGC-ATCGGGCTAGGATTCTAATGGA-----------------------------ATTCGGATGGCATT-------T--ACTGGATTTATGG--CTACAATTGAGGTAAGTAGGT--T------------------AG--AG-----
droAna3	scaffold_13335:1620463-1620732 +		CGTTT--------TAT------TTTCCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTAAGTTATCGAAACTCA----------AAACAAAACCAT-------CC-------------------GAAGGCAA---A-AG-GATTAAC------------CTTTGACC--TCTATCCGCAGTAAACTG---TTTTTTTGT-------------TGGA-------TG-----CCATGCAATTTCGAA----TCGG-------AATGCGGTT-C------TTCGGAGT----GGATATGATGAACGGACTG----------------TGACCGGGTCT-CCGTTGGACACTGAAT--GCG---ACA-----ACGGTAAGTTAGG--ACTTC--ATAATC-----CCA-TAGA-TCT
droBip1	scf7180000395454:47421-47696 -		TCTCT--------TCATTTTGTTTTGCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTAAGTAATCGAAACTCA----------AACAGAACCCCC-------CA-------------------GAAGGCAAACAG-AG-GATTAAC------------CTTTAACC--TCTATCCGCAGTAAACTAA--TTTTTTTGT-------------TGGA-------TG-----TCACGCAATTTCGAG----T--------------CGGTT-T------TTCGGAAT----GGATATGATGGACGGACTA----------------TGACCTGGCCT-ACGTTGGATACTGAAT--GAC---AGA-----ACGGTAAGTTTGA--ATATCATAATATC-----ATA-GATATTAT
dp5	XL_group3a:1992106-1992400 +		TCTTTCTG-----TAT------TTTGCAGTAACT---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GTG---GGCGTGCGGTGATCCA--------------G---T--------------------GA----CCC-GT-GACTAAC------------ACTTGGCC--TTCTTCTGCAGTAAACTC---TTG-----TATGAACAACACAAGGGGCA-TTA-----------TGACATCCTGGCTTCATGGCTATGCTCACCCCTGGG-T------GGGGACTT----G-------------GACTGTGGATTGGCACTGGCTTGGACGGGACTGAAAA-CG--CCAGGAT--CTGAGGATA--ACTGTGGTGAGCATTA--ACTTCCACCCACC-----CAA-CCGC-CCT
droPer2	scaffold_11:2685871-2686165 -		TCTTTCTG-----TAT------TTTGCAGTAACT---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GTG---GGCGTGCGGTGATCCA--------------G---T--------------------G----ACCG-GT-GACTAAC------------ACTTGGCC--TTCTTCTGCAGTAAACTC---TTG-----TATGAACAACACAAGGGGCA-TTA-----------TGACATCCTGGCTTCATGGCTATGCTCACCCCTGGG-T------GGGGACTT----G-------------GACTGTGGATTGGCACTGGCTTGGACGGGACTGAAAA-CG--CCAGGAT--CTGAGGATA--ACTGTGGTGAGCATTA--ACTTCCACCCACC-----CAA-CCGC-CCT
droWil2	scf2_1100000004909:12016401-12016507 -		TCGTT--------TGC------TTTGCAGTAACA---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTAAGTATCTGAAAATAA----------GGGGGAAACCACCCCCCT-CC--------------ACGCCTTTAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12928:1282346-1282411 +		TT--C--------TAC-------TTGCAGTAACTAAAAAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6473:13710735-13710800 -		T---T--------TAC-------TTGCAGTAACTCAAAAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15203:8433948-8434019 -		CTTTC--------TAC-------TTGCAGTAACTCAAAAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GGC---AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TCTCT--------TAC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCT---AACGGCACCCTT-------------------CCT------------ACCGCCTTTGACAAACGG-TT-GATTAAC------------CTTTGACC--CTCTTCTACAGTTAAATA---TTT-----T-------------GGGGCA-TTAATC-----GCA---------------------------AGCACTGTT-A------TGGAAATT----GGA-------------------------AGTGATTTGGACGGGATTACCAC-TG--ACTGGAT--GTGG--ATT-----TAGGTAAGCAGAG--TTCCCGAACAATC-----CAG-AAGC-TTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................AAACACAAATCAAAATGGCTG..................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ATCAAAATGGCTGATGATGAGG.........................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................ACACAAATCAAAATGGCTGAC................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AACACAAATCAAAATGGCTGAT................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AACACAAATCAAAATGGCTG..................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ACAAATCAAAATGGCTGATGATGAGG.........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TCTCT--------TAC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATA-GCT---AACGGCACCCTT-------------------CCT------------ACCGCCTATGACAAACGG-TT-GATTAAC------------CTTTGACC--CTCTTCTGCAGTTAACTA---TTT-----A-------------GGGGCA-TTAATC-----GCA---------------------------AGCACTGTT-T------TGGAAAAT----GGA-------------------------AGTGATTTGGACGGGATTACCAC-TG--ACTGGAT--GTGG--ATT-----TAGGTAAGCAGAG--TTCCCGAACAATC-----CAG-AAGC-TTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................AAATGGCTGATGATGAGGCT.......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................T------TGGAAAAT----GGA-------------------------AGTGATTT........................................................................................	20	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................CTGGAT--GTGG--ATT-----TAGGTA.......................................	19	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................G--ACTGGAT--GTGG--ATT-----TAG..........................................	18	1	1.00	1	1	0	0	0
.................................................CAAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................GGATTACCAC-TG--ACTGGAT--GTGG--ATT-----.............................................	26	1	1.00	1	0	0	0	1
......................................AAAACACAAATCAAAATGGCTGATGA..............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
....................................................AATGGCTGATGATGAGGCT.......................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	1	0

dm3

TCTCT--------TAC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-TCC---AACGGCCCCCTT-------------------TCT------------ACCGCCTTTGAGAAACGG-TT-GATTAAC------------CTTTGACC--CTCTTCTTCAGTTAACTA---TTT-----T-------------GGGGCA-TTAATC-----GCA---------------------------AGCACTGTT-T------TGGAAATT----GGA-------------------------AGTGATTTGGACGGGATTAAACC-TG--ACTGGAT--GTGG--ATT-----TAGGTAAGCAAAG--CTCCCGAACAATC-----CAG-AAGC-TTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................AATCAAAATGGCTGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AATCAAAATGGCTGATGATGAGAA........................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................AAATCAAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTAACC---AAAAACACAAATCA...........................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AACACAAATCAAAATGGCT...................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................AAAACACAAATCAAAATGGCT...................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................GCTGATGATGAGGTGAG.....................................................................................................................................................................................................................................................................................................................................................................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ACAAATCAAAATGGCTGATGATG............................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CAAATCAAAATGGCTGATG...............................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AATCAAAATGGCTGATGAT.............................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................AAATGGCTGATGATGAGA.........................................................................................................................................................................................................................................................................................................................................................................	18	3	1.67	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ATCAAAATGGCTGATGATGAGAA........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................................................................................................................................................................................................................................GATTTGGACGGGATTAAACC-TG--ACTGG...............................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................AATCAAAATGGCTGATGATG............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GATTAAACC-TG--ACTGGAT--GTGG--AT...................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................CA---------------------------AGCACTGTT-T------TGGAAATT----GGA-------------------------AGTG............................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GTATC-TCC---AACGGCCCCCTT-------------------TCT------------ACCGCCTT...............................................................................................................................................................................................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AACC---AAAAACACAAATCAAAAT.......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AATCAAAATGGCTGATGATGATC.........................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AACC---AAAAACACAAATCA...........................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAAATGGCTGATGATGAGAA........................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AACC-TG--ACTGGAT--GTGT--G....................................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TCTCT--------TAC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCT---AACAGCCCCCTT-------------------CCC------------ACCGCCTTTTACATACGG-TT-GATTAAC------------CTTTGACC--CTCTTCCGCAGTTAACTA---TTT-----T-------------CGGGCA-TTTATC-----GCA---------------------------AGCACTGTG-T------TGGAAAAT----GGA-------------------------AGTGATTTGGACGGGGCTACCCC-TG--ACTGGAT--GTGG--ACC-----AAGGTAAGCAGAG--TTCCCGAAAGATC-----CAG-AAGC-TTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................AAAACACAAATCAAAATGGC....................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0
..................................................AAAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CCCC-TG--ACTGGAT--GTGG--ACC-----AAG..........................................	23	1	1.00	1	0	0	0	1	0	0	0
...........................AGTAACC---AAAAACACAAATCAAAATGGCT...................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
.......................................AAACACAAATCAAAATGGCTGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................G--ACTGGAT--GTGG--ACC-----AAGT.........................................	19	1	1.00	1	0	0	0	0	1	0	0
........................................................GCTGATGATGAGGTGAGG....................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
...................................................AAATGGCTGATGATGAGA.........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.......................................AAACACAAATCAAAATGGCTGATG...............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
..............................AACC---AAAAACACAAATCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
..................................................AAAATGGCTGATGATGAGG.........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GCTACCCC-TG--ACTGGAT--GTGG--ACC-----.............................................	24	1	1.00	1	0	1	0	0	0	0	0

droYak3

TCTCT--------TAC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCT---AACGGCCCCCCT-------------------CCT------------GCCGCCTTTGACATACGG-TT-GATTAAC------------CTTTGACC--CTCTTCTGCAGTTAACTA---TTT-----T-------------CGGGCA-TTTATC-----GCA---------------------------AGCACTGTG-T------TGGCAAAT----GGA-------------------------GATGATTTCGACGGGATTACCCC-TG--ACTGGAT--GTGT--ATT-----GAGGTAAGCAGAG--CTCCCGAAAGATC-----CAG-AAGC-ATC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................AAAACACAAATCAAAATGGC....................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.........................................ACACAAATCAAAATGGCTGATGAT.............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................AAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................CACAAATCAAAATGGCTGATGATGAGAA........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................AATCAAAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................ATCAAAATGGCTGATGATGAGGCC.......................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................ACACAAATCAAAATGGCTGAT................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................ACACAAATCAAAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................G-TT-GATTAAC------------CTTTGACC--CTCTTC..............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................AATGGCTGATGATGAGGCT.......................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TCTCT--------TAC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCT---AATGGCCCACTT-------------------CAAAG----------A-CCCCACTAAGATATGG-AGTAATTAAC------------CTTTG-CC--CTCTTCTGCAGTTAACTTAAATTG-----T-------------TGGACA-TTTATG-----GCA---------------------------AGCACTGTG-A------CTGGATAT----GGA-------------------------ACTGATTTGGACGGGATTACTCTTTG--ACTGGAT--GTGG--CTAG----AAGGTAAGCAGAG--CACTTAAGAAATC-----CAAATAGC-TTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCTTT--------TCC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCC---TTTGGCCCCTCC-------------------CCCT----TAACCCAACCCCCTTTGACCCATGC-GG-GATTAAC------------CTTTGGCCTCCTCCTTTGCAGTTAACTA---TTT-----T-------------TGGTGA-TATATC-----GA--ACA-----------------------ACTGCTGGT-ACCGGAAATGGAAAT----GGA-------------------------GGAGATGTGGACGGGACTAACCT-GG--ACCGGAT--CCGG--ATG-----AAGGTAAGGAGAGAGTTCCCAGCACATC-----CTT-AAGC-TTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCCTT--------TCC-------TTTCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCT---AACCGCCACTTAACCC--------------T---T--------------------A-C---TCT-TG-GATTAAC------------CTTTGTTC--CTCCTCCGCAGTTATTTA---TTT-----T-------------CGGGATTTTGATCGAACTGTT---------------------------TGCACTGTTTA------CTGGAAAT----GGA-------------------------AGTGATTTGGACGGTACTACCCTATG--CGAGGAT--CTAG--TTG-----AAGGTAAGCCGAGTGTTCTTTGCAGATC-----CCG-AAGC-TTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCTTT--------TCCCT---TTTTGCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GTT---GATGGACCCCTA-A-----------------CCA------------AACG-CTTCGATCTATGG-TG-GATTAAC------------CTTTGACC--CTCTTCCGCAGTTAACTT---TTT----AT-------------TGGAAA-TTTATC-----GCA---------------------------CGCACTGCT-A------CTGAAAAT----GGA-------------------------TGAGATTTGGACGGGACTACCCT-TG--ACTGGAC--GTGG--CTA-----AAGGTAAGCAGAT--TCCTCAA--AATTAGGATCTT-TTGC-TTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTTT--------CCC-----TTTTGCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GTT---ATTGAAACGCTC-T-----------------CCA------------ATCG-CTTTGACCTATGG-TG-GATTAAC------------CTTTGACC--TTCTTCGGCAGTTAACTA---TTT-----T-------------TGGGTA-TTGATT-----GCA---------------------------CGCACTGGC-A------CTGGAAAT----GGA-------------------------TGAGATTTGGACGGGACTACCCC-TG--ACTGGAT--GTGG--CTA-----AAGGTAAGCAGAG--TTCCCAATAGATC-----CCA-GAGC-TGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCTTC--------TCC-------TTTCAGTAACC---AACAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCC---AATGGCCTCCGT-------------------T--------------ATCCCCTTTGACCTATGG-TG-GATTAAC------------CTTTAACC--CCCTTCCGCAGTTAACTG---TTT-----T-------------TGGGAA-CGATTC-----GCA---------------------------TGCACTGTC-A------CCGGAAAT----GGA-------------------------AGCGATTCGGACGGGATGCACCC-CG--ACTGGAT--GTGG--CTA-----AAGGTAAGCCGAG--TTGCCCAGAGTTG-----CAC-CACC-GCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCCTTCTCTGTTTCAC-------TTGCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GCT---CAA----------TTAG-----------------AGATC-------CCCTCCAGTGAAAACCAGTTG-GATTAACACAACATTCCACCTCCC-CCCTTTCTCCTGCAGTAAAGCA---TTA-----TATTCAC-----------------ACT-----GT--ACA-----------------------CGCACCGGC-ATCGGGCTAGGATTCTAATGGA-----------------------------ATTCGGATGGCATT-------T--ACTGGATTTATGG--CTACAATTGAGGTAAGTAGGT--T------------------AG--AG-----	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGTTT--------TAT------TTTCCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTAAGTTATCGAAACTCA----------AAACAAAACCAT-------CC-------------------GAAGGCAA---A-AG-GATTAAC------------CTTTGACC--TCTATCCGCAGTAAACTG---TTTTTTTGT-------------TGGA-------TG-----CCATGCAATTTCGAA----TCGG-------AATGCGGTT-C------TTCGGAGT----GGATATGATGAACGGACTG----------------TGACCGGGTCT-CCGTTGGACACTGAAT--GCG---ACA-----ACGGTAAGTTAGG--ACTTC--ATAATC-----CCA-TAGA-TCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................AAATGGCTGATGATGAGA.........................................................................................................................................................................................................................................................................................................................................................................	18	1	11.00	11	1	0	0	0	0	10
..............................................AATCAAAATGGCTGATGATG............................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	3
.................................................CAAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	1	0	0	2
........................................AACACAAATCAAAATGGCTGAT................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	3
..................................................AAAATGGCTGATGATGAGG.........................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	3	0	0	0	0
................................................TCAAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	1	0	0	0	0	2
..............................................AATCAAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	1
..................................................AAAATGGCTGATGATGAGA.........................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
............................................CAAATCAAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
.....................................AAAAACACAAATCAAAATGGCTGAT................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
................................................TCAAAATGGCTGATGATGAGA.........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..........................................CACAAATCAAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..............................................AATCAAAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................GT----GGATATGATGAACGGAC...........................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...........................................ACAAATCAAAATGGCTGATGATGAGG.........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...............................................ATCAAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................AAAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............................................AATCAAAATGGCTGATGATGAGAA........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
........................................AACACAAATCAAAATGGCTGATG...............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.............................................AAATCAAAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
........................................AACACAAATCAAAATGGCT...................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..........................................CACAAATCAAAATGGCTGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
......................................AAAACACAAATCAAAATGGCTGATGAT.............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
................................................TCAAAATGGCTGATGATGAGC.........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.................................................CAAAATGGCTGATGATGAGG.........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............................................AATCAAAATGGCTGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................................TCAAAATGGCTGATGATGAGAA........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.........................................ACACAAATCAAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...................................................AAATGGCTGATGATGAGGCT.......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
...............................................ATCAAAATGGCTGATGATG............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
....................................................AATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.................................................CAAAATGGCTGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..............................AACC---AAAAACACAAATCAAAAT.......................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
...................................................AAATGGCTGATGATGAGAA........................................................................................................................................................................................................................................................................................................................................................................	19	6	0.33	2	0	0	0	0	0	2

droBip1

TCTCT--------TCATTTTGTTTTGCAGTAACC---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTAAGTAATCGAAACTCA----------AACAGAACCCCC-------CA-------------------GAAGGCAAACAG-AG-GATTAAC------------CTTTAACC--TCTATCCGCAGTAAACTAA--TTTTTTTGT-------------TGGA-------TG-----TCACGCAATTTCGAG----T--------------CGGTT-T------TTCGGAAT----GGATATGATGGACGGACTA----------------TGACCTGGCCT-ACGTTGGATACTGAAT--GAC---AGA-----ACGGTAAGTTTGA--ATATCATAATATC-----ATA-GATATTAT	Size	Hit Count	Total Norm	Total
No Reads

dp5

TCTTTCTG-----TAT------TTTGCAGTAACT---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GTG---GGCGTGCGGTGATCCA--------------G---T--------------------GA----CCC-GT-GACTAAC------------ACTTGGCC--TTCTTCTGCAGTAAACTC---TTG-----TATGAACAACACAAGGGGCA-TTA-----------TGACATCCTGGCTTCATGGCTATGCTCACCCCTGGG-T------GGGGACTT----G-------------GACTGTGGATTGGCACTGGCTTGGACGGGACTGAAAA-CG--CCAGGAT--CTGAGGATA--ACTGTGGTGAGCATTA--ACTTCCACCCACC-----CAA-CCGC-CCT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................AATCAAAATGGCTGATGATG............................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................CAAATCAAAATGGCTGATGATGAGAA........................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................AATCAAAATGGCTGATGA..............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.............................................AAATCAAAATGGCTGATGAT.............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AAAA-CG--CCAGGAT--CTGAGGATA--ACTGTG..........................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................AAAACACAAATCAAAATGGCTGAT................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................AACACAAATCAAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0
........................................AACACAAATCAAAATGGCTGATG...............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AAAA-CG--CCAGGAT--CTGAGGATA--ACTGC...........................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................CAAATCAAAATGGCTGATGATG............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................ATCAAAATGGCTGATGATGAGAA........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............................................ATCAAAATGGCTGATGATGAGAAA.......................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................ATCAAAATGGCTGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................TGCAGTAACT---AAAAACACAA...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................CACAAATCAAAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0
................................................TCAAAATGGCTGATGATGAGAA........................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	1	0	0	0	0

droPer2

TCTTTCTG-----TAT------TTTGCAGTAACT---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GTG---GGCGTGCGGTGATCCA--------------G---T--------------------G----ACCG-GT-GACTAAC------------ACTTGGCC--TTCTTCTGCAGTAAACTC---TTG-----TATGAACAACACAAGGGGCA-TTA-----------TGACATCCTGGCTTCATGGCTATGCTCACCCCTGGG-T------GGGGACTT----G-------------GACTGTGGATTGGCACTGGCTTGGACGGGACTGAAAA-CG--CCAGGAT--CTGAGGATA--ACTGTGGTGAGCATTA--ACTTCCACCCACC-----CAA-CCGC-CCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................AAAATGGCTGATGATGAGGTGAGT....................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
.......................................................GGCTGATGATGAGGTGAG.....................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2
......................................................................................................CCA--------------G---T--------------------G----ACCG-GT-GACTAAC------------ACTTGGC.......................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
..................................................AAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.........................................ACACAAATCAAAATGGCTGATGATG............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................................ACACAAATCAAAATGGCTG..................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................ACACAAATCAAAATGGCTGATGAT.............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
................................CT---AAAAACACAAATCAAAATGGCTGAT................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................ACACAAATCAAAATGGCTGAT................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................AACACAAATCAAAATGGCTGAT................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...............................................ATCAAAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
............................................CAAATCAAAATGGCTGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GACTGAAAA-CG--CCAGGAT--CTGAGG.....................................................	24	1	1.00	1	0	0	0	0	1	0
.................................T---AAAAACACAAATCAAAATGGCTG..................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GACTT----G-------------GACTGTGGATTGGCACT.............................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................................................AAATGGCTGATGATGAGA.........................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	1

droWil2

TCGTT--------TGC------TTTGCAGTAACA---AAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTAAGTATCTGAAAATAA----------GGGGGAAACCACCCCCCT-CC--------------ACGCCTTTAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................AAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	1
.................................................CAAAATGGCTGATGATGAGGCT.......................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
..............................AACA---AAAAACACAAATCAAAATGGCTG..................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
...................................................AAATGGCTGATGATGAGG.........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..............................................AATCAAAATGGCTGATGATGAGGTGAG.....................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.................................................CAAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......................................AAAACACAAATCAAAATGGCTGATG...............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
.................................................CAAAATGGCTGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..............................................AATCAAAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...............................................ATCAAAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
...................................................AAATGGCTGATGATGAGA.........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0
...............................................ATCAAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0

droVir3

TT--C--------TAC-------TTGCAGTAACTAAAAAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................AATCAAAATGGCTGATGAT.............................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................................CAAAATGGCTGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..............................................AATCAAAATGGCTGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..............................................AATCAAAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ATCAAAATGGCTGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AATCAAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AATCAAAATGGCTGATGATG............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AATCAAAATGGCTGATGATGAGAAA.......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AACACAAATCAAAATGGCTGATGAT.............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................ACACAAATCAAAATGGCT...................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ACAAATCAAAATGGCTGAT................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AATCAAAATGGCTGATGATGAGG.........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CAAATCAAAATGGCTGATGAT.............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................ACACAAATCAAAATGGCTGAT................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................AAAAAACACAAATCAAAATGGCT...................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CAAATCAAAATGGCTGATG...............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................AAAACACAAATCAAAATGGCTGA.................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................AAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................AAAAAACACAAATCAAAATGGCTGAT................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................AAAAACACAAATCAAAATGGCTGATG...............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................AAAAAAACACAAATCAAAATGGCT...................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AACACAAATCAAAATGGCTGATGATG............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................ACACAAATCAAAATGGCTGATGATG............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AAAAAAAACACAAATCAAAAT.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AAACACAAATCAAAATGGCTGAT................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AAAAAAAACACAAATCAAAATGGCTG..................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................CAAAATGGCTGATGATGAGA.........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................CAAAATGGCTGATGATGAGGC........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAAATGGCTGATGATGAG..........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................AAATGGCTGATGATGAGAA........................................................................................................................................................................................................................................................................................................................................................................	19	8	0.50	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAAATGGCTGATGATGAGAA........................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAAATGGCTGATGATGAGAAA.......................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T---T--------TAC-------TTGCAGTAACTCAAAAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................AATCAAAATGGCTGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
...........................................ACAAATCAAAATGGCTGAT................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.................................................CAAAATGGCTGATGATGA...........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0

droGri2

CTTTC--------TAC-------TTGCAGTAACTCAAAAAAACACAAATCAAAATGGCTGATGATGAGGTGAGGTGAGTATC-GGC---AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................AAATGGCTGATGATGAGG.........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0

dsi_17459

x:17108507-17108656 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads