ID:

dsi_17433

 Coordinate:

2r:4180827-4181123 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-63.5 -63.5 -63.5

Flybase annnotation

exon [2r_4181124_4181345_-]; CDS [2r_4181124_4181345_-]; exon [2r_4180663_4180826_-]; CDS [2r_4180663_4180826_-]; intron [2r_4180827_4181123_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTTGCCTCTGCTCTGAATCATCTGATGAAATCAGCTGCTGATCTCCAAGCACCGCATCGTTTCGACATAAAGTTGGGGTCTCACATTAACCTGTTTCCATGGAATTCTATAAAATTCGCATTTAGTTAAGAATTTGTTGAATGCTCAGCTGTGACCGAAACGCACGGACTGGAAATATTTTGGGTCAGGGGGTTTTTAAATTGACTTTAATAGATCACAATGTTCACAAGATGTATAAAGTTCGCACAGTTCAAGTTTCCCTCGACCACTAAATGATTTTCCCTCCTCCAGGATTGCTATCCAGTTGTCTGCGGTGGACCCAGCGAAACCGCGGAGCTGCT
**************************************************(((.((((((..((.((.((((.((((...))))..))))..)).))....)))).)))))..(((((((.(((..(((((((...(((((.............((((((((......))))).))).............)).)))...))))))))))..)))))))...(((..((((((..((((((((.(((((..(((.(((((((((((.((.(((.............))).)))))))).....))))).)))...)))))))))..))))..))))))..))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
............................................................................TCTGATGAAATTTGCTGCTGTTC.......................................................................................................................................................................................................................................................................................................... 23 3 2 9.50 19 13 6 0 0 0 0 0 0
.....TGCGCCAAGTTCATTGCCGATGTCATTCCAA......................................................................................................................................................................................................................................................................................................................................................................... 31 0 1 1.00 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................................ACCCAGCGAAACCGCGGAGCT... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................AGTTGTCTGCGGTGGACC..................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................AGTTGTCTGCGGTGGACCCAGCGAAACC........... 28 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................ACAAGATGTATAAGGTTCGCA............................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
........GCCAAGTTCATTGCCGATGTCATT............................................................................................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................................................................................TGATTGCTATCCAGTTGTCTGCGGT.......................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................TGAATGCTCAGCTGTGACCG........................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................TCTGATGAAATTTGCTGCTGTTCT......................................................................................................................................................................................................................................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TTAACAGATCAGAATGTTCACA................................................................................................................. 22 2 1 1.00 1 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................................................CACAAGATGTCTAAAGCT................................................................................................... 18 2 4 0.50 2 1 0 1 0 0 0 0 0
....................................................................CTGAAACCTCTGATGAAA....................................................................................................................................................................................................................................................................................................................... 18 2 8 0.38 3 0 0 0 0 3 0 0 0
....................................................................CTGAATCCGCTGATGAAGTC..................................................................................................................................................................................................................................................................................................................... 20 3 17 0.35 6 0 4 0 0 0 0 2 0
...................................................................................................................................................................................................AAGGCTCAGCTGTGA........................................................................................................................................................................................... 15 1 4 0.25 1 1 0 0 0 0 0 0 0
.................................................................................TGAAAACAGCTGTTGGTCTCC....................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0 0
............................................................................TCTGATGAAATTTGCTGCTGTT........................................................................................................................................................................................................................................................................................................... 22 3 4 0.25 1 0 1 0 0 0 0 0 0
........................................................................................AGCAGCTGGTCTCCAAGCA.................................................................................................................................................................................................................................................................................................. 19 2 6 0.17 1 0 0 0 0 0 0 0 1
............................................................................TCTGATGAAATTTGCTGCTGT............................................................................................................................................................................................................................................................................................................ 21 3 7 0.14 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................TCACAAGATGCATAAAGG.................................................................................................... 18 2 10 0.10 1 0 1 0 0 0 0 0 0
.....................................................................TGAAACCTCTGATGAAA....................................................................................................................................................................................................................................................................................................................... 17 2 20 0.10 2 1 1 0 0 0 0 0 0
.................................................................................TGAAAACAGCTGTTGGTCTC........................................................................................................................................................................................................................................................................................................ 20 3 13 0.08 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................................CACAAGATGTCTAAA...................................................................................................... 15 1 15 0.07 1 1 0 0 0 0 0 0 0
............................................................................TCTGATGAAATTTGCTGC............................................................................................................................................................................................................................................................................................................... 18 2 16 0.06 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................TGAAGGCTGAGCTGTGA........................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................TGGGGATTTTTAAATTGATTTT..................................................................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0 0 0
............................................................................................GCTGGTCTCCAAGCA.................................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................CAAAAAGTTCGCATTTAGTT...................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

GGTTGACGCGGTTCAAGTAACGGCTACAGTAAGGTTTTATAAACCTATTACACTCAGAACGGAGACGAGACTTAGTAGACTACTTTAGTCGACGACTAGAGGTTCGTGGCGTAGCAAAGCTGTATTTCAACCCCAGAGTGTAATTGGACAAAGGTACCTTAAGATATTTTAAGCGTAAATCAATTCTTAAACAACTTACGAGTCGACACTGGCTTTGCGTGCCTGACCTTTATAAAACCCAGTCCCCCAAAAATTTAACTGAAATTATCTAGTGTTACAAGTGTTCTACATATTTCAAGCGTGTCAAGTTCAAAGGGAGCTGGTGATTTACTAAAAGGGAGGAGGTCCTAACGATAGGTCAACAGACGCCACCTGGGTCGCTTTGGCGCCTCGACGA
**************************************************(((.((((((..((.((.((((.((((...))))..))))..)).))....)))).)))))..(((((((.(((..(((((((...(((((.............((((((((......))))).))).............)).)))...))))))))))..)))))))...(((..((((((..((((((((.(((((..(((.(((((((((((.((.(((.............))).)))))))).....))))).)))...)))))))))..))))..))))))..))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M024
male body
.......CCGGTTCAAGTAAAGGCTTCAGT............................................................................................................................................................................................................................................................................................................................................................................... 23 3 1 8.00 8 7 0 1 0 0 0 0 0
........CGGTTCAAGTAAAGGCTTCAGT............................................................................................................................................................................................................................................................................................................................................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................GAGGAGGTCCTAACGGTAGGT...................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
..........TTTCAAGTAACGGCTACAG................................................................................................................................................................................................................................................................................................................................................................................ 19 1 1 1.00 1 0 0 0 0 1 0 0 0
..TTGACGCGGTTCAAGTAA......................................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................CGTGTCAAGTTCGAAGGGAGC............................................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TCGAGTTCAAAGGGA............................................................................... 15 1 19 0.32 6 0 0 1 0 0 5 0 0
......................................................................................................TTTGAGGCGTAGCAAAGCAG................................................................................................................................................................................................................................................................................... 20 3 7 0.29 2 0 2 0 0 0 0 0 0
........................................................................................TCGTCGACTATAGGTTCGT.................................................................................................................................................................................................................................................................................................. 19 2 4 0.25 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................ATTTAATTGAAAATAACTAGTGT.......................................................................................................................... 23 3 4 0.25 1 1 0 0 0 0 0 0 0
....................................................................GACTTAGGCGACTACTTCAG..................................................................................................................................................................................................................................................................................................................... 20 3 17 0.24 4 4 0 0 0 0 0 0 0
GGTTTACACGGTTCAAGTCAC........................................................................................................................................................................................................................................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 0 1 0
................................................................ACGAGACTTGGTTGACT............................................................................................................................................................................................................................................................................................................................ 17 2 20 0.15 3 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TCAGGTTCAAAGGGA............................................................................... 15 1 14 0.14 2 0 0 0 0 0 2 0 0
...........................................................................................ACGACCAGAGGTTCGT.................................................................................................................................................................................................................................................................................................. 16 1 8 0.13 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................CAAAGGGAGCTGATG........................................................................ 15 1 9 0.11 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TTTAAAAGGGAGCTGGTAAT...................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................AAAAATTTAACTGAATCTA.................................................................................................................................. 19 2 20 0.10 2 0 0 0 0 0 2 0 0
.................................................................CGGGACTTAGTAAACGACTT........................................................................................................................................................................................................................................................................................................................ 20 3 13 0.08 1 0 0 0 0 0 0 0 1
................................................................................................................................................................................................TACTTACGAGTCCAGACTG.......................................................................................................................................................................................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GTGTTTCAAGTGTTCTCAA........................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0
...................ACGGCGACGGTAAGGTT......................................................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:4180777-4181173 - dsi_17433 --CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTT------------------GCCTCTGCTC---------------------TGAATCATCTGATGAAATCAGCT--GCTGATCTCCAAGCACCGCAT-CGTTTCGACATAAAGTTGGGGTCTCACATTAACCTGTTTCCATGGAATTCTA--------TAAAA-TTC----GCATTTAGTTAA-GAATTTGTTGAATGCTCAGCTGTGACC-GAA--------------------------------ACGCACGGA-----CTG-GAA------------------------------------ATA-----TTTTGGGTCA---GGGGGTTTTT---------------AAATT-GACTTTAATA-GA---------TCACAATGTTCACAAGATGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGTTCGC-----ACAGT-TCAAGTTTCCC---------------TCGACCACTAAATGATTTT-----------------------CCCTC------CTCCAGGATTGCTATCCAGTTGTCTGCGGTGGACCCAGCGAAACCGCGGAGCTGCT
droSec2 scaffold_1:1014776-1015179 - --CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTT------------------GCCTCTGCTCTGTGCTC--------------TGAATCATCTGATGAAATCAGCT--GCTGATCTTCAAGCACCGCAT-CGTTTCGACATAAAGTTGGGGTCTCACATTAACCTGTTTCCATGGAATTCTA--------TAAAA-TTC----GCATTTAGTTAA-GAATTTGTTGAATGCTCAGCTGTGACC-GAA--------------------------------ACGCACGGA-----CTG-GAA------------------------------------ATA-----TTTTGGGTCA---GGGGGTTTTT---------------AAATT-GTCTTTAATA-GA---------TCACAATGTTCACAAGATGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGTTCGC-----ACAGT-TCAAGTTTCCC---------------TCGACCACTGAATGATTTT-----------------------CCCTC------CTCCAGGATTGCTATCCAGTTGTCTGCGGTGGACCCAGCGAAACCGCTGAGCTGCT
dm3 chr2R:3357528-3357948 - --CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTT------------------GCCTCTGCTCTGTGCTCTGTGCTCTGTGGTCTGAATCATCTGATGAAATCAGCT--GCTGATCTTCAAGCACCGCAT-CGTTTTGACATAAAGTAGGGGTCTCACATTAACCTGTTTCCACGGAATTCTA--------TAAAA-TTT----GCATTTAGTTAA-GAATTTGTTGAATGCTCAGCTGTGACC-GAA--------------------------------ACGCACGGA-----CTG-GAA------------------------------------ATA-----TTTTGGGTCAGGAGGGGGTTTAC---------------AAATT-GTTTTGAACA-GA---------TCACAATGTTCACAAGATGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCGTTTGC-----AAAGT-TCAAGTTTCCC---------------TCGGCCACTGAATGATTTT-----------------------CCCTC------CTCCAGGATTGCTATCCAGTTGTCTGCGGTGGACCCAGCGAAACGGCGGAGCTGCT
droEre2 scaffold_4929:19239987-19240395 + --CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTT------------------GCCTC--------------------------TGAACCATCTGATGAAATCAGCTG-----AGCTTCAAGCACCGCAT-CGTTTCGACATAAACT-GGGGTCGCATATTAACCTGTTTCTACGGAATTCTA--------TAAAA-TTC----GCATTTAGCCTA-GAACTTGTAGAAACTTTAGCTGTGACC-GGA--------------------------------ACGCACGGA-----ATG-GAA------------------------------------ATA-----TTTTGGGTCG---GGGGGTTTTA---------------TAATT-GGTTTTAAAA-TA---------T---------CACAAGATGTATTTAGTTTCATTTTAGAATGTGTATGTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------TAGAGTTCGC-----AAAGT-TAAATTATCCA---------------TCGACCACTGCATGATTTT-----------------------CCTTT------CTCCAGGATTGCTATCCAGTTGTCTGCGGTGGACCCAGCGAAACCGCGGAGCTGCT
droYak3 2L:16036185-16036565 - --CTAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTT------------------CCTTC--------------------------TGAATCATCTGATGAAATCAGCTG-----AGCTTCAAGCACCGCAT-CGTTTCGACATAAACT-GCGGTCGCACATTAACCTGTTTCTACGGAATTCTA--------TAATA-TTCGCTCGCTTTTAGTTGA-GAATTTGTAGAAACCCTAGATGTGACC-AAA--------------------------------ATGAATGGA-----ACA-GAA------------------------------------ATA-----TTTTGGGTCG---GGGGCTTTTA----------------AATTTGT-TTTAA----------------ACAA---TCACAAGATGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATGTTAGC--TATATAGTATAAAGTATA---------TATATTC-TTGATCA----------TT-----------------------TCATC------CTCCAGGATTGCTATCCAGTTGTCTGCGGTGGCCCCAGCGAAACCGCGGAGCTGCT
droEug1 scf7180000409672:5371317-5371791 - --CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTATC------------------GCTGC--------------------------CGAATCATCTGATGAAATTAGCTA-----AGCCCCAAGCACCGAAA-CAGCTCGACATAAACT-GAGGTGTCGCATTAACCTGTTTGTACAGAATTCCG--------TAAAA-TAC----GTATTCAGTTTA-GAGTTTG--GAAATGTTAGCTGTGACC-AAATTAACTTTAAAACAGCAGTCT-----------AAGCAAGGGAATTACTGTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATGAGGCGAATGCAATTTGAAAAGTTTTCGAATCCAAGCTTGATTGTTTTTATAACCAATGTCATTTTTAAATTTATCAATTAAGATTTATACATATTTTCATTATGTACTAGCAAACTATATAAAATTGTTGA----------------------------------------------------AAAAGTGAC-------------------------TAAAGCTTAATTACTATACCTCAATT------TTTCAGGACTGCTTTCCAGTTGTCTGCGGTGGACCCAGCGAAACTGCTGAGCTGCT
droBia1 scf7180000302292:2789347-2789775 + --CCAACTGCGCTAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTG------------------GCTGCTAAGCC-----------------------GTCATCTGGTGAAAT-AGCTAAGCTGAGA-TTAAGTAGCGAA---------------------------GCATTAACCTGTTTCTACAAAACTATA--------TAAGA-TTG----ACATGAAGTTTGGGAGTCTC--GAATAGTGATACCCAACCCATTATAAAGTTATAAAAGTAATCCTTTTTTGAAAAACGTAAGAAGATATCTG--TAATT-CTCCATTATTGAAATCAGATTTATTTATAGATATATTTGTTTTTGGGCAA---G--------------------------------------------------------AACATTCTTAAGTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAGATTGC-----ATAGA-TTAAT-CTCCTTAAAAGGTAACGTTTCTGAGTACTAAACCACTTT-----------------------CCTCT------CTCCAGGATTGTTATCCAGTTGTTTGCGGTGGACCCAGCGAAACCGCGGAGCTGCT
droTak1 scf7180000412807:128834-129174 - --CCAACTGCGCCAAGTTTATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTG------------------GCTGC--------------------------TGAATCACCTGATGAAATAAGCTT-----AGCTTTAAGCACCGAAA-CATTTCGACATAAATT-TGGGTTTCGCGTTAACCTGTTTGTTCAGAACAGTA--------AAAAA-TGC----GTTTTTAGTTTGTGAGTTA-AAAAAAATATCTCTGTGACC-AAATTA-----------------------------------------------------------------------------------------------------------------------------------------------AAATA-TA---------TTTAAAATTTAAAAAGACCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCCATA------------ATTAAG--AA---------TTAAATTCCCGAATACTAATTGATTTT-----------------------CCTCT------CCCCAGGATTGTTATCCAGTTGTCTGCGGCGGACCCAGTGAAACCGCTGAGCTGCT
droEle1 scf7180000491347:190459-190641 - --CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCGAAATATTTGGATAATGTGAGTCTT------------------GCTGC--------------------------TGAATCACCTCATGAGACCAGCGA-----AACGCGAAGCACCCAAA-AATGTCGACTTAATTT-TGGGTGTCGCACTAACCTGTTTGTACAGAATTCCG--------AAAAAATCC----GTATTTAGTTGA-GAGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000780160:4994-5175 + --CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTT------------------GCTGC--------------------------TGAATCATCTGATGAGATAAGCTA-----AGCTCAAAGCACCAAAAACGT--TGAGTTAAATT-TAGGTGTCACACTAACCTGTTTATACAAAGTTCCA--------AAAAAATCA----GTGTTTAGTTGA-GACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453948:115503-115909 - --CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAGTATTTGGATAATGTGAGTTTT------------------GT-GA--------------------------TGA---ATCTGATGAAATTAGCTA-----AGCTTAAAGCGCCTAAA-AAGT------TAAATTTGAGGTGTCGCATCAACCAGTTTATATAGAATATTATTATACCAAAA----------ATAATTAGTTGA-CAATTA---AAAAAGCTAGCT----------------------------------------------------------T-GGAATACCTCCAA--------------------------ATA-----ATTAGG------------ATTTTAAATTTATTCTTTTAAAATTTGT-TTCAAAACAAGCTTACGAATGCAAATGAT-------------------------AAAAAGTGTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------AGACATTTTATTTAGCATTAAGCAAA---------TTAAATTTTGGTGTTCAAAATGATTTAACTAAAA----------ACATTCCGATT------GTTTAGGACTGTTATCCCGTTGTCTGCGGGGGGCCCAGCGAAACCGCTGAGCTGCT
droKik1 scf7180000302385:919993-920050 - --CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:16419192-16419254 + --CCAACTGCGCCAAATTCATTGCCGATGTCATTCCCAAATATTTGGATAATGTACGTCTG------------------ACCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396384:524306-524378 + AAACGACTTCGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT------TTTCAGGACTGCTATCCAGTTGTCTGCGGTGGACCCACTGAGACCGCTGAGCTGCT
dp5 3:12386116-12386171 + --C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGGATTGCTATCCAGTGGTCTGCGGTGGACCCAGCGAAACGGCTGAGCTGCT
droPer2 scaffold_44:568175-568230 + --C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGGATTGCTATCCAGTGGTCTGCGGTGGACCCAGCGAAACGGCTGAGCTGCT
droWil2 scf2_1100000004382:149910-149964 + --CCAATTGTGCCAAATTTGTTGCCGATGTTATACCAAAATATTTGGATAATGTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12823:1581592-1581647 + --GCAATTGCGCCAAGTTCATTGCGGAGACAATACCCAAATATCTGGATAATGTGCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:856151-856502 + --GCAATTGTGCAAAATTCATAGCAGAGACTCTACCCAAATATTTGGATAATGTGCGTGAGAAATACTGGAGAATTCTAGCATA--------------------------AAAATTATCTTATCATCCC----------------ACGCTCATCAT-TGAT----------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGATGTAGTGATTCCAAAGCTAAAAGCCTGCTAAACTAGTTTTGTTGTTATCCATAAACTAAACTATGTTTATATAGGATACCTAAC-TGTAAATTGAGCATGACAATAGATGAGATATCTACATAAATTAGCAGAGATTTTGGCCTAGTTATGTATGACCTAT-----------------------------------------------ATTGTTTAA-----------------------TCTAT------TTGCAGGATTGCTATCCCGTCGTCTGTGCCGGACCGAGTGAAACAGCTCAGCTTTT
droGri2 scaffold_15245:5705211-5705284 - --TGATTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTTACCCAACAGGATTGCTATCCCGTGGTCTGCGGTGGCCCGACTGAAACTGCTGAGCTGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
--CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTT------------------GCCTCTGCTC---------------------TGAATCATCTGATGAAATCAGCT--GCTGATCTCCAAGCACCGCAT-CGTTTCGACATAAAGTTGGGGTCTCACATTAACCTGTTTCCATGGAATTCTA--------TAAAA-TTC----GCATTTAGTTAA-GAATTTGTTGAATGCTCAGCTGTGACC-GAA--------------------------------ACGCACGGA-----CTG-GAA------------------------------------ATA-----TTTTGGGTCA---GGGGGTTTTT---------------AAATT-GACTTTAATA-GA---------TCACAATGTTCACAAGATGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGTTCGC-----ACAGT-TCAAGTTTCCC---------------TCGACCACTAAATGATTTT-----------------------CCCTC------CTCCAGGATTGCTATCCAGTTGTCTGCGGTGGACCCAGCGAAACCGCGGAGCTGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......TGCGCCAAGTTCATTGCCGATGTCATTCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3111.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAGCGAAACCGCGGAGCT...2111.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTCTGCGGTGGACC.....................1811.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTCTGCGGTGGACCCAGCGAAACC...........2811.00110000000000000000
..........GCCAAGTTCATTGCCGATGTCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
...........................................................................................................................................................................................................................................................TGAATGCTCAGCTGTGACC-G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
droSec2
--CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTT------------------GCCTCTGCTCTGTGCTC--------------TGAATCATCTGATGAAATCAGCT--GCTGATCTTCAAGCACCGCAT-CGTTTCGACATAAAGTTGGGGTCTCACATTAACCTGTTTCCATGGAATTCTA--------TAAAA-TTC----GCATTTAGTTAA-GAATTTGTTGAATGCTCAGCTGTGACC-GAA--------------------------------ACGCACGGA-----CTG-GAA------------------------------------ATA-----TTTTGGGTCA---GGGGGTTTTT---------------AAATT-GTCTTTAATA-GA---------TCACAATGTTCACAAGATGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGTTCGC-----ACAGT-TCAAGTTTCCC---------------TCGACCACTGAATGATTTT-----------------------CCCTC------CTCCAGGATTGCTATCCAGTTGTCTGCGGTGGACCCAGCGAAACCGCTGAGCTGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATA-GA---------TCACAATGTTCA........................................................................................................................................................................................................................................................................................................................................................2111.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAGCGAAACCGCTGAGCTGCT2411.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTCTGCGGTGGACCCAGC.................2211.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGTTGTCTGCGGTGGACCCAGC.................2511.0010010
...................ATTGCCGATGTCATTCCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..................CATTGCCGATGTCATTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..................CATTGCCGATGTCATTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTGTCTGCGGTGGAC......................1811.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGTTGTCTGCGGTGGACCCAGC.................2611.0010010
dm3
--CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTT------------------GCCTCTGCTCTGTGCTCTGTGCTCTGTGGTCTGAATCATCTGATGAAATCAGCT--GCTGATCTTCAAGCACCGCAT-CGTTTTGACATAAAGTAGGGGTCTCACATTAACCTGTTTCCACGGAATTCTA--------TAAAA-TTT----GCATTTAGTTAA-GAATTTGTTGAATGCTCAGCTGTGACC-GAA--------------------------------ACGCACGGA-----CTG-GAA------------------------------------ATA-----TTTTGGGTCAGGAGGGGGTTTAC---------------AAATT-GTTTTGAACA-GA---------TCACAATGTTCACAAGATGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCGTTTGC-----AAAGT-TCAAGTTTCCC---------------TCGGCCACTGAATGATTTT-----------------------CCCTC------CTCCAGGATTGCTATCCAGTTGTCTGCGGTGGACCCAGCGAAACGGCGGAGCTGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................TCATCTGATGAAATCAGCT--GCTGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261148.001480000000000000100000000000000000000000000000000000002000000000000000000000000000100001004100000000000000012239010000100000000000000000001000100000002000000000010050000001000000000000000000000000000000000000000000000032001310310138618200000000010000020000000000211000000000000000000000000000000100001000000000000000100000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------------------CCCTC------CTCCAGGATTGCTA..........................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................ATTTGGATAATGTGAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AAGTTCATTGCCGATGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGTGGACCCAGCGAAACGGC.........2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCGTTTGC-----AAG..........................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATTGCTATCCAGTTGTC................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................ATCATCTGATGAAATCAGCT--GCTGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTGCGGTGGACCCAGCGAA..............2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CGCCAAGTTCATTGCCGATGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCAGCGAAACGGCG........1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATCCAGTTGTCTGCGGTGT........................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGATTGCTATCCAGTTGT.................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGTTGTCTGCGGTGGACCCAGCGAA..............2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGAAACGGCGGAGCTGCT2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TGAAATCAGCT--GCTGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTATCCAGTTGTCTGCGGT..........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ATTGCCGATGTCATTCCAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................GCACCGCAT-CGTTTTGACATAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGTGGACCCAGCGAAAC............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CATTGCCGATGTCATTCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................ATCTGATGAAATCAGCT--GCTGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGTTGTCTGCGGTGGACC.....................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CAAGTTCATTGCCGATGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TCATCTGATGAAATCAGCT--GCTGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TTTTGGGTCAGGAGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................GCTCTGTGCTCTGTGGTCTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGCGGTGGACCCAGCGA...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGTGGACCCAGCGAAAC............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATCCAGTTGTCTGCGGT..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCAAGTTTCCC---------------TCGGCCACTT...................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGCGCCAAGTTCATTGCCGATGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGAAACGGCGGAGCT...1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ACGCACGGA-----CTG-GAA------------------------------------ATA-----TTTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTTCCC---------------TCGGCCACTGAATGATT............................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC------CTCCAGGATTGCTATCCAGT....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGTTGTCTGCGGTGGACCCAGC.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTGTCTGCGGTGGACCCAG..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAACA-GA---------TCACAATGT...........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AGCACCGCAT-CGTTTTGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ACGCACGGA-----CTG-GAA------------------------------------ATA-----TTTTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................CTGTGCTCTGTGCTCTGTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTCTGCGGTGGACCCAGCGA...............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TGATGAAATCAGCT--GCTGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAACA-GA---------TCACAATGTTCA........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTATCCAGTTGTCTGCGGTGGA.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TCATCTGATGAAATCAGCT--GCTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TCATCTGATGAAATCAGCT--GCTGATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGGACCCAGCGAAACGGC.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTGGACCCAGCGAAACGGC.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................AATCATCTGATGAAATCAGCT--GCTGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TTCATTGCCGATGTCATTCCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TTTTGACATAAAGTAGGGGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGGTGGACCCAGCGAAACGGCGGA......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TAAAGTAGGGGTCTCACATTAACCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GGTCAGGAGGGGGTTTAC---------------................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AAGTTCATTGCCGATGTCATTCCAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TGGGTCAGGAGGGGGTTTAC---------------A...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTGTCTGCGGTGGACCC....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCACAAGATGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCGT......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGCGGTGGACCCAGC.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCAGCGAAACGGCGGA......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGTGGACCCAGCGAAACGGCGG.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCAGCGAAACGGCGGAGCTGCT2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
droEre2
--CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTT------------------GCCTC--------------------------TGAACCATCTGATGAAATCAGCTG-----AGCTTCAAGCACCGCAT-CGTTTCGACATAAACT-GGGGTCGCATATTAACCTGTTTCTACGGAATTCTA--------TAAAA-TTC----GCATTTAGCCTA-GAACTTGTAGAAACTTTAGCTGTGACC-GGA--------------------------------ACGCACGGA-----ATG-GAA------------------------------------ATA-----TTTTGGGTCG---GGGGGTTTTA---------------TAATT-GGTTTTAAAA-TA---------T---------CACAAGATGTATTTAGTTTCATTTTAGAATGTGTATGTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------TAGAGTTCGC-----AAAGT-TAAATTATCCA---------------TCGACCACTGCATGATTTT-----------------------CCTTT------CTCCAGGATTGCTATCCAGTTGTCTGCGGTGGACCCAGCGAAACCGCGGAGCTGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........GCGCCAAGTTCATTGCCGATGTCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGTTGTCTGCGGTGGACCCAGCG................2711.0010000010
..................CATTGCCGATGTCATTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
..........GCCAAGTTCATTGCCGATGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTATCCAGTTGTCTGCGGT..........................2311.0010001000
........................CGATGTCATTCCAAAATATTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTCTGCGGTGGACCC....................1911.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAACCGCGGAGCTGCT1911.0010001000
droYak3
--CTAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTT------------------CCTTC--------------------------TGAATCATCTGATGAAATCAGCTG-----AGCTTCAAGCACCGCAT-CGTTTCGACATAAACT-GCGGTCGCACATTAACCTGTTTCTACGGAATTCTA--------TAATA-TTCGCTCGCTTTTAGTTGA-GAATTTGTAGAAACCCTAGATGTGACC-AAA--------------------------------ATGAATGGA-----ACA-GAA------------------------------------ATA-----TTTTGGGTCG---GGGGCTTTTA----------------AATTTGT-TTTAA----------------ACAA---TCACAAGATGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATGTTAGC--TATATAGTATAAAGTATA---------TATATTC-TTGATCA----------TT-----------------------TCATC------CTCCAGGATTGCTATCCAGTTGTCTGCGGTGGCCCCAGCGAAACCGCGGAGCTGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................A-----TTTTGGGTCG---GGGGCTTTT................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTGTCTGCGGTGGCCCC....................2111.00100100000000
................................................................................................................AATCATCTGATGAAATCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTATCCAGTTGTCTGCGGTG.........................2511.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTATCCAGTTGTCTGCGGT..........................2311.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCCCCAGCGAAACCGCGGA......2311.00101000000000
..................................................................................................................................................................................................................................................................................................................ATGAATGGA-----ACA-GAA------------------------------------ATA-----TTTTGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.....ACTGCGCCAAGTTCATTGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCAGTTGTCTGCGGTGGCCCC....................2411.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTATCCAGTTGTCTGCG............................2211.00100010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGTTGTCTGCGGTGGCCCC....................2311.00100001000000
droEug1
--CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTATC------------------GCTGC--------------------------CGAATCATCTGATGAAATTAGCTA-----AGCCCCAAGCACCGAAA-CAGCTCGACATAAACT-GAGGTGTCGCATTAACCTGTTTGTACAGAATTCCG--------TAAAA-TAC----GTATTCAGTTTA-GAGTTTG--GAAATGTTAGCTGTGACC-AAATTAACTTTAAAACAGCAGTCT-----------AAGCAAGGGAATTACTGTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATGAGGCGAATGCAATTTGAAAAGTTTTCGAATCCAAGCTTGATTGTTTTTATAACCAATGTCATTTTTAAATTTATCAATTAAGATTTATACATATTTTCATTATGTACTAGCAAACTATATAAAATTGTTGA----------------------------------------------------AAAAGTGAC-------------------------TAAAGCTTAATTACTATACCTCAATT------TTTCAGGACTGCTTTCCAGTTGTCTGCGGTGGACCCAGCGAAACTGCTGAGCTGCTSizeHit CountTotal NormTotal
No Reads
droBia1
--CCAACTGCGCTAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTG------------------GCTGCTAAGCC-----------------------GTCATCTGGTGAAAT-AGCTAAGCTGAGA-TTAAGTAGCGAA---------------------------GCATTAACCTGTTTCTACAAAACTATA--------TAAGA-TTG----ACATGAAGTTTGGGAGTCTC--GAATAGTGATACCCAACCCATTATAAAGTTATAAAAGTAATCCTTTTTTGAAAAACGTAAGAAGATATCTG--TAATT-CTCCATTATTGAAATCAGATTTATTTATAGATATATTTGTTTTTGGGCAA---G--------------------------------------------------------AACATTCTTAAGTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAGATTGC-----ATAGA-TTAAT-CTCCTTAAAAGGTAACGTTTCTGAGTACTAAACCACTTT-----------------------CCTCT------CTCCAGGATTGTTATCCAGTTGTTTGCGGTGGACCCAGCGAAACCGCGGAGCTGCTSizeHit CountTotal NormTotal
No Reads
droTak1
--CCAACTGCGCCAAGTTTATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTG------------------GCTGC--------------------------TGAATCACCTGATGAAATAAGCTT-----AGCTTTAAGCACCGAAA-CATTTCGACATAAATT-TGGGTTTCGCGTTAACCTGTTTGTTCAGAACAGTA--------AAAAA-TGC----GTTTTTAGTTTGTGAGTTA-AAAAAAATATCTCTGTGACC-AAATTA-----------------------------------------------------------------------------------------------------------------------------------------------AAATA-TA---------TTTAAAATTTAAAAAGACCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCCATA------------ATTAAG--AA---------TTAAATTCCCGAATACTAATTGATTTT-----------------------CCTCT------CCCCAGGATTGTTATCCAGTTGTCTGCGGCGGACCCAGTGAAACCGCTGAGCTGCTSizeHit CountTotal NormTotal
No Reads
droEle1
--CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCGAAATATTTGGATAATGTGAGTCTT------------------GCTGC--------------------------TGAATCACCTCATGAGACCAGCGA-----AACGCGAAGCACCCAAA-AATGTCGACTTAATTT-TGGGTGTCGCACTAACCTGTTTGTACAGAATTCCG--------AAAAAATCC----GTATTTAGTTGA-GAGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
--CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCTT------------------GCTGC--------------------------TGAATCATCTGATGAGATAAGCTA-----AGCTCAAAGCACCAAAAACGT--TGAGTTAAATT-TAGGTGTCACACTAACCTGTTTATACAAAGTTCCA--------AAAAAATCA----GTGTTTAGTTGA-GACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
--CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAGTATTTGGATAATGTGAGTTTT------------------GT-GA--------------------------TGA---ATCTGATGAAATTAGCTA-----AGCTTAAAGCGCCTAAA-AAGT------TAAATTTGAGGTGTCGCATCAACCAGTTTATATAGAATATTATTATACCAAAA----------ATAATTAGTTGA-CAATTA---AAAAAGCTAGCT----------------------------------------------------------T-GGAATACCTCCAA--------------------------ATA-----ATTAGG------------ATTTTAAATTTATTCTTTTAAAATTTGT-TTCAAAACAAGCTTACGAATGCAAATGAT-------------------------AAAAAGTGTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------AGACATTTTATTTAGCATTAAGCAAA---------TTAAATTTTGGTGTTCAAAATGATTTAACTAAAA----------ACATTCCGATT------GTTTAGGACTGTTATCCCGTTGTCTGCGGGGGGCCCAGCGAAACCGCTGAGCTGCTSizeHit CountTotal NormTotal
No Reads
droKik1
--CCAACTGCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGTGAGTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
--CCAACTGCGCCAAATTCATTGCCGATGTCATTCCCAAATATTTGGATAATGTACGTCTG------------------ACCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................TCCCAAATATTTGGATAATGACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501010000
droBip1
AAACGACTTCGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT------TTTCAGGACTGCTATCCAGTTGTCTGCGGTGGACCCACTGAGACCGCTGAGCTGCTSizeHit CountTotal NormTotal
No Reads
dp5
--C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGGATTGCTATCCAGTGGTCTGCGGTGGACCCAGCGAAACGGCTGAGCTGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGTGGTCTGCGGTGGACCC....................2312.0020000200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTATCCAGTGGTCTGCGGTGG........................2611.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACCCAGCGAAACGGCTGAGC....2411.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCGGTGGACCCAGC.................1811.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATCCAGTGGTCTGCGGTGGACCC....................2611.0010100000000
droPer2
--C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGGATTGCTATCCAGTGGTCTGCGGTGGACCCAGCGAAACGGCTGAGCTGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTATCCAGTGGTCTGC.............................2013.003300000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATCCAGTGGTCTGCGGTGG........................2311.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGGTCTGCGGTGGACCCAGCGAA..............2611.001010000
droWil2
--CCAATTGTGCCAAATTTGTTGCCGATGTTATACCAAAATATTTGGATAATGTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................GTTATACCAAAATATTTGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......TTGTGCCAAATTTGTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...CAATTGTGCCAAATTTGTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.......TGTGCCAAATTTGTTGCCGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
droVir3
--GCAATTGCGCCAAGTTCATTGCGGAGACAATACCCAAATATCTGGATAATGTGCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................TACCCAAATATCTGGATAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
....AATTGCGCCAAGTTCATTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
........GCGCCAAGTTCATTGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000001000000000000000000000000000000000000
.....ATTGCGCCAAGTTCATTGCGGAGACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000100000000000000000000000000
............................ACAATACCCAAATATCTGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
....AATTGCGCCAAGTTCATTGCGGAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000010000000000000000000000000000000000000000
....AATTGCGCCAAGTTCATTGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
......TTGCGCCAAGTTCATTGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
............CAAGTTCATTGCGGAGACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
...................ATTGCGGAGACAATACCCAAATATCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000100000000000000000000000
.....................TGCGGAGACAATACCCAAATATCTGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000100000
droMoj3
--GCAATTGTGCAAAATTCATAGCAGAGACTCTACCCAAATATTTGGATAATGTGCGTGAGAAATACTGGAGAATTCTAGCATA--------------------------AAAATTATCTTATCATCCC----------------ACGCTCATCAT-TGAT----------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGATGTAGTGATTCCAAAGCTAAAAGCCTGCTAAACTAGTTTTGTTGTTATCCATAAACTAAACTATGTTTATATAGGATACCTAAC-TGTAAATTGAGCATGACAATAGATGAGATATCTACATAAATTAGCAGAGATTTTGGCCTAGTTATGTATGACCTAT-----------------------------------------------ATTGTTTAA-----------------------TCTAT------TTGCAGGATTGCTATCCCGTCGTCTGTGCCGGACCGAGTGAAACAGCTCAGCTTTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATCCCGTCGTCTGTGCC..........................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----------------------------------------------ATTGTTTAA-----------------------TCTAT------TTGCA...................................................2111.001100000
droGri2
--TGATTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTTACCCAACAGGATTGCTATCCCGTGGTCTGCGGTGGCCCGACTGAAACTGCTGAGCTGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCCCGACTGAAACTGCT........2111.00110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCCGTGGTCTGCGGTGGCCCGACT.................2811.00110

Generated: 05/18/2015 at 10:07 PM