ID:

dsi_17426

Coordinate:

3r:10162125-10162180 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10161904_10162124_+]; CDS [3r_10161904_10162124_+]; CDS [3r_10162181_10162525_+]; exon [3r_10162181_10162525_+]; intron [3r_10162125_10162180_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------################################################## GAGCCAGAAAAACAGAGATTGTTCGCGTCTACTTAATATTTGCATCAGAGGTAGGACTCTTAATATATCTTTAGATCATGTTAAATACTTTGCAACAATTTTTCAGCTCGCTGTCAACTACAATCACCAATTAAACGTTCACATGCAGGAGATTCT ************************************************(((((....((((((((((....))).)))))))....))))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553487 NRT_0-2 hours eggs	M053 female body	SRR618934 dsim w501 ovaries
...................................................................................................................................TAAACGTTCACATGCAGGAG.....	20	0	1	1.00	1	1	0	0	0
......................TCGCGTCTACTTAATATTTGCATCAGA...........................................................................................................	27	0	1	1.00	1	0	1	0	0
...........................................ATCAGAGGCAGGACTCTGA..............................................................................................	19	2	2	0.50	1	0	0	1	0
...............................................................................GTTAAATACTTTACA..............................................................	15	1	20	0.05	1	0	0	0	1

Anti-sense strand reads

CTCGGTCTTTTTGTCTCTAACAAGCGCAGATGAATTATAAACGTAGTCTCCATCCTGAGAATTATATAGAAATCTAGTACAATTTATGAAACGTTGTTAAAAAGTCGAGCGACAGTTGATGTTAGTGGTTAATTTGCAAGTGTACGTCCTCTAAGA ************************************************(((((....((((((((((....))).)))))))....))))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	M053 female body	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries
...........................................................................................................TGCGACAGTTGATGTTAGTGG............................	21	1	1	1.00	1	1	0	0	0	0	0
...............................................................................................................CCAGTTGATGATAGTGTTTAAT.......................	22	3	2	0.50	1	0	0	1	0	0	0
......................................................CTGAGAATTATAAAGGAAT...................................................................................	19	2	2	0.50	1	0	1	0	0	0	0
.......................................................TGAGAATTATAAAGGAATC..................................................................................	19	2	4	0.25	1	0	1	0	0	0	0
.............................................................TTATATAAAAAAGTAGTACAATT........................................................................	23	3	5	0.20	1	0	0	0	1	0	0
...................................................................................................................TTGAGGTTAGTGGTTACT.......................	18	2	7	0.14	1	0	0	0	0	1	0
....................................................CCGTGAGAATTATATAG.......................................................................................	17	2	20	0.05	1	0	1	0	0	0	0
................................................................................................................................TTAATTTGCAAGAGT.............	15	1	20	0.05	1	0	0	0	0	0	1

Generated: 04/24/2015 at 10:33 AM