dsi_17423

Name	Class	Family	Strand
DNAREP1_DM	RC	Helitron	-

CGGAAGTTTTTATGAAGATGTGGTTTACACCGTGTATTAAAAATGATAAAGTGAGTACTACTTCAAATTTAAAGTATTTAAAAGGATATTTTAAACAAAAGAAATTTCATGGTTCGCTTAAACAAAAAGGAAAGTGACTGTTATTGAAAAAGAAAATCGTTTCCTACCATATAAAGTATGTATATTCTTGATTAGGATCACCAGCCCAGTCGATCTGGCAATGTCCGTACGTATGATCGTCGAAATCTCG ************************************************....(((((((((....((((((((((((....)))))))))))).........(((((((((.(((((............)))))))))....)))))..((((....))))..........))))).))))(((((.....)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M024 male body	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	M025 embryo	SRR553487 NRT_0-2 hours eggs
................GATGTGGTTTACACCGTGTATTAAAAA...............................................................................................................................................................................................................	27	0	2	0.50	1	1	0	0	0	0	0
..........TATGAAGATGTGGTTTACACC...........................................................................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0	0
............TGAAGATGTGGTTTACACC...........................................................................................................................................................................................................................	19	0	2	0.50	1	1	0	0	0	0	0
..........TATGAAGATGTGGTTTACACCGTG........................................................................................................................................................................................................................	24	0	2	0.50	1	1	0	0	0	0	0
...............................................................................................................................AGGAAAGTGACTGTTATTGA.......................................................................................................	20	0	2	0.50	1	0	1	0	0	0	0
.......TTTTTTGAATATGTGGTTTA...............................................................................................................................................................................................................................	20	2	8	0.13	1	0	0	0	1	0	0
.......................................AAAATGATAAAGTGGGGA.................................................................................................................................................................................................	18	2	15	0.07	1	0	0	1	0	0	0
..............................................................TCAAATTTTAAGTCTGTAAAA.......................................................................................................................................................................	21	3	15	0.07	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................CAATGACCGTATGTATG...............	17	2	17	0.06	1	0	0	1	0	0	0
.......................................................................................................................................GAGTGTTATTGAAAAA...................................................................................................	16	1	19	0.05	1	0	0	1	0	0	0
................................................................................................................................AGAAAGTGACTGGTAGTGA.......................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................ACGTATGATCGTCTAGA.....	17	2	20	0.05	1	1	0	0	0	0	0

GCCTTCAAAAATACTTCTACACCAAATGTGGCACATAATTTTTACTATTTCACTCATGATGAAGTTTAAATTTCATAAATTTTCCTATAAAATTTGTTTTCTTTAAAGTACCAAGCGAATTTGTTTTTCCTTTCACTGACAATAACTTTTTCTTTTAGCAAAGGATGGTATATTTCATACATATAAGAACTAATCCTAGTGGTCGGGTCAGCTAGACCGTTACAGGCATGCATACTAGCAGCTTTAGAGC ************************************************....(((((((((....((((((((((((....)))))))))))).........(((((((((.(((((............)))))))))....)))))..((((....))))..........))))).))))(((((.....)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR553485 Chicharo_3 day-old ovaries	M053 female body
..................................................................................................TTCTCTAAAATGCCAAGCGAATT.................................................................................................................................	23	3	2	0.50	1	1	0	0	0	0	0
.................................................................................................................................................................AGGATGGTATCTTTCA.........................................................................	16	1	6	0.50	3	0	1	2	0	0	0
..............................................................................................................................................................................................................................CAGCCGTGCATAGTAGCAG.........	19	3	7	0.29	2	0	0	0	2	0	0
..............................................................................................................CCAAGCGAAGTTGTTT............................................................................................................................	16	1	5	0.20	1	1	0	0	0	0	0
.............................................................................AATTTTCCTATAAAA..............................................................................................................................................................	15	0	5	0.20	1	1	0	0	0	0	0
.................................................................................................................................................................AGGATGGTATCTTTC..........................................................................	15	1	10	0.20	2	2	0	0	0	0	0
...............................................................................................................................................................ATAGGATGGTATCTTTCA.........................................................................	18	2	11	0.18	2	1	1	0	0	0	0
.....................................ATTTTTACTATTTCA......................................................................................................................................................................................................	15	0	8	0.13	1	0	0	0	0	1	0
...............................................................................................................................................................................................................TCAGCTAGACCGATACAGGCAT.....................	22	1	17	0.12	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................AGACCGTTACAGGAA......................	15	1	20	0.10	2	0	0	0	0	2	0
...........................................................................................................GGCCCAAGCGAATTGGTTT............................................................................................................................	19	3	12	0.08	1	1	0	0	0	0	0
...............................................................................................................CAAGCGAAGTTGTTT............................................................................................................................	15	1	13	0.08	1	1	0	0	0	0	0
.................................................................................................................................................................AGGATGGTACCTTTCA.........................................................................	16	2	20	0.05	1	0	0	1	0	0	0
...............................................................................................................................................................ATAGGATGGTATCTTTCAA........................................................................	19	3	20	0.05	1	0	0	0	0	0	1
.................................................................................................................................................................AGGATTGTATCTTTCA.........................................................................	16	2	20	0.05	1	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:1583475-1583724 -	dsi_17423	CGGAAG-----------TTTTTATGA--------------AGATGTGGTTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTGTATTAAA-----------AATGATAA--AGTG---------------AGTACTA-CTTCAAATTTAAAGTATTTAAAAGGATATTTTAAACAAAAGAAATT-------------------------------------------------------------------------------TCAT-GGTTCGCTTAAACAAAAAG----GA----AAGTGACTGTTATTGAAAAAGAAAATCGTTTCCTACCATATAAAG--TATGTATATTCTTGATTAGGATCACCAGCCCAGTCGATCTGGCAATGTCCGTACGT----------------ATGATCGTCGAAATCTCG
droSec2	scaffold_60:70951-71161 +		CGGAAG-----------TTTTTATGA--------------AGATGTGGTTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTGTATTAAA-----------AATGATAA--AGTG---------------AGTACTA-CTTCAAATTTAAAGTATTTT-----------------------------------------------------------------------------------AAAGGA--------------TATTTT------AAAC--------------------AAAAG----TTATTGAAAAAGAAAATCGTTTCCTATCATATAAAG--TATTTATATTCTTGATTAGGATCACCAGCCCAGTCGATCTGGCAATGTCCGTACGT----------------ATGAACGTCGAAATCTCG
dm3	chr2R:587741-587943 -		CTGAAG-----------TTTTTATGA--------------AGATGTGGTTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTGTACTAAA-----------AACGACAA--AGTG---------------AGTACTA-CTTAAAATTTTAAGTATTTAAAAAAAT-------------------------------------------------------------------------------------------------ATTTT------TAAC------------------------------AAAAGAGAAAGAAAATCGTTTCCTATTTTATAAAG--TAT--ATAGTCTGGATCAGGATCACTAGCCCAGTCGATTTTGAAATGTCCGTCCGT----------------ATTAACGTCGAAATCTTG
droEre2	scaffold_4784:22720280-22720530 -		AATTTTTTTTAAAGGTGTTTTTGTAAAA-------------------------------------------------------------------------------------------------------------------------------GAAAAATTAATTTACAATTACAAATTAAAAACAAGCCAAAAAATTTA-------A------------------------------AAATT--------------------------GTAA-------------------------AATT-----------------------------------------------------TTTGTGATAATTATAACCCTTACTC-------GTA--GAGTAAAAGGG--------------TATACTAGATTCGTTA--------------------A-------------AACAGAAGGAAACGTTTCCGACCATATAT-GTATGTTTTTATTCTTGATCAGGATCCATATCCGAGTCTATCTGGCCATATCCGTCCGT----------------ATGAACGTCGAGATTTCA
droYak3	v2_chr3L_random_043:3753-4011 +		AATAGG-----------TTTTTTTGT--------------TGTTTTGGCAATAA------------------------------------------------CA-----------------TT-------TTATAAAATAT---AT----AAAAT-----------------------------------TAGTACATTATTTATTTATTATTGGGATTTTGAAATAGATTAG-----------------------------------------------------------------------------------------------------------------------------------GTTATATACCCGTTACTC-------GTA--GATTAAAAGGG--------------TATACTAGATTCGTCG--------------------AAAAGTATGTAACAGGCAGAAGGAAGCGTATCCGACAATATATAG--TATATTTATTCTTGATCAGGATCAATAGCCGAGTCGATCTGACCATGTCCGTCTGT----------------ATGAACGTTGAGATCT--
droEug1	scf7180000409008:1462267-1462504 -		TAGGGG-----------TTTTA------------------AGTTTTGGTT------------------ATCAAAAATGCGAATTTT-----------GGCTT-----------------C-------------------------------------------------------------------------------------------------------------------------T------------------------------------------------CCACA-CTCAAC------A------------------------------------------------------GTATTTATACCCGTTACTC-------GTA--GAGTAAAAGGG--------------TATACTAGATTCGTTG--------------------AAAAGTATGTAACAGATAGAAGGAAGCGTTTCCGACCCTATAAAG--TATATATATTCTTGATCAGGATCAATAGCGGAGTCGATTGAGCCATGTCCGTCTGTCCGTCCATCCGT----ATGAATGCTGAGATCTCA
droBia1	scf7180000299478:3583-3859 +		AAGAAG-----------GCTTTCTAAATATGAATTT----------TATTTATA-----------------------------TCTAATAAACAACCTTAATAATAAACCTTAATTACTAATTCGGTGTTAA------------------------------------------------AAAC------------TAAAT------TTTTAAAAG------------------------------TTT---------------------------------------------C----CGCT-----------------G--AGACCAAATAACAGATTTTTCAGTGCTCGATGGACTT---A-----------------------------------------------------------------------------AAATTGGTGAACTTG--AACTT-GAATTGGTAGAAGGTAGCGTTTCCGACCCCATAAAG--TACAAATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGC-CGT------------ATGAACGTTGAAACC---
droTak1	scf7180000415837:10522-10764 +		CAGGTAT----------ACCTACTTA--------------AAATGCTGTTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTGT--CAAA-----------AATC--AA--AACG---------------CCTACTTTCTACAAAGTTACA------------------------------------------------------ATAGTTAAACCCGTTACTC-------GTA--GAGTAAAAGGG--------------TATATTGTATTCGTGC--------------------AAAAGTATGTAACAGCTAGAAGGAAACCTTTCCGACCATATAAAG--TATATATATGATTGATCAGGGTCACTAGCCGAGTCGATACAGCCATGTCCGTCTGTCCGT------------ATGAACGCTGAGATCTCG
droEle1	scf7180000490987:116513-116723 +		CAATAG-----------TTTTCA--AATATGTATTCTTTTAAAAA------------------------------------AAATT-----------ATTGT-----------------TTT-----------------------------------------------------------------------------------------------------------------------------------------------AA--AGTG---------------GAAGCTA-G-----------------------------------------------------------ACTT---ATATTTATATCCTT------------GC--------AGAGGA--------------TATTATAATTTCAGTC--------------------AGAAATTTGCATCGCAGTGAAGAAGACAAATCCGACCCTATAAAG--TATATATATTCTTGAATATCATCACTAGGAGAGTCGATCTAGCCATGTCCGTCTGTCCGTC-------------------------CTCG
droRho1	scf7180000777464:1499-1787 -		ATAAAG-----------TTTAAT-----------------AGATTTGAAT-ATA-----------------------------------------------CTATGATTGTTAA-----------------------ACAT---AA----ACAAA-----------------------------------GCGAACTATATT-------T------------------------------ATATTGAATATATTTAAAG---------------GATATTTAATTAAATATATTT----CGCT-------------------------------------------------------------TTATTATACCCGTTACTC-------GTA--GAGTAAAAGGG--------------TATATTGTATTCGTGC--------------------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAG--TATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCCGTCCGTATGAACGCTGAGATCTCG
droFic1	scf7180000453158:24301-24437 -		AAAGCG-----------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGTTG--------------------AAAA-AGTCACACAAAATGAAGGAAGCTCTTGCGACCCCATAGGG--TAAACATATTCTTGGTCGGGATCATCAGGCTAGTCGATCTATGTCTGT----CT-TCCGTTCGT--------AAGAACATCGAGATCTCG
droKik1	scf7180000302808:609557-609778 -		CTGATG-----------TTTTTGTGGAC------------AGATAGGATGTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAAAACTACT-----------ACTCGTAG--ACCT---------------CTTAATA-TTTAAAATTTTATGT-----------------------------------------------------TTTTTATACCCTT----------------------GCAGGG--------------TATTATAATTTCAGTC--------------------AGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAG--TATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTTTGTCCGTCTGTC-------------------------
droAna3	scaffold_12911:1973107-1973319 -		AGAAAG-----------ATTTTA-----------------AAAGGTGCTTTACACCGTTGAAAATGTTTTTTTAAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA-TTTCAGTTTCT---TTT-----------------------------------------------------------------------------------TTCAGAGGG--------------TATTATAATTTTGGTC--------------------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAG--TATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCTGTT----TCT-----------ACG
droBip1	scf7180000396553:17518-17760 +		CAACTG-----------TTTCCA-GA--------------TGACATCA-------------------------------------------------------------------------TTTGGTGCTACACATATTAT---AC----AA---GACAA-------------------------------------TTTCATGCCCACTTTCAAGGTATTA--------------------------------------------------------------------------------------------TATAAGAAT----------------------------------------ATTTTTATACCCTT------------GC--------AGAGGG--------------TATTATAATTTTGTCC--------------------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAG--TATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTCTGTT----TCT-----------ACG
dp5	Unknown_group_374:1318-1555 +		TGCCAG-----------TAATAAT----------------------------------------------------------------------------------------------------------ACACAAAATATGGTATAAGTAAATT-----------------------------------TA--ACATTATATTATTATT---------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTATACCCGATACTC-------AAAATGAGTATTGGGGTATTTAATATACCGTATATTAGATTTGTGG---TAAAAAG----------GGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAG--TATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGGGCCATGTCTGTCTGTCCGTCCGTC-------------------------
droPer2	scaffold_11:1946920-1947151 -		CAAAATTTTTAGTA---A---TATTA--------------AAATGTTCTT--------------------------------------------------------------------------------TTACATAATAT---AT----AAATA-----------------------------------TTGCTT---------------------------------------------------------------------------AT---------------A-----------ATTC-----------------------------------------------------TTT---GTGTTTATACCCGATACTC-------AAAATGAGTATTGGGG--------------TATATTAGATTTGTGG---TAAAAGT----------GGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAG--TATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCTGTC-------------------------
droWil2	scf2_1100000001600:974-1218 -		TTATTA-----------------TTA--------------AAAT--TGTTTATA-----------------------------GTATATTAAATAAATAAATTATATATATTAAATATAAAT------------------------------TTA----A-------------------TTAAA------------TATAT------ATTATTAAG------------------------------TATACAAATAAAA---------------GAAATATAATTAAAA--------------------------------------------------------------------------------ATATAATT------------GC------AAAAAGGG--------------TATATTAATTTTGGTC--------------------A---------------TAAAAGGAAGCATCTGCGACCATATAAAG--TATATATATTCTTGATCAGCATGAC-----GAGACGAGTTAGCCATGTCCGTCCGTCCGTCCGTCTGG----ATCA-----------ACG
droVir3	scaffold_12958:1416519-1416777 -		AGAAAC-----------G---------------------------------------------------------------AAGTT-----------AGTTT-----------------TTT---------------------------------------------------------------------------------------------------GAAACAGAAATGGTACCCTGTATTGAAGGGACTGGAAGGGTGACAGGCTGGT---------------A-----------ACAC------------------------------------------------------------TTTTTATACCCTGAACCCATTAAAAGTG--GTTAAAACGGG--------------TATAATGTCTTTGTTC----AAATTT----------AAATGTATGTTACAGGCAGAAGGAAACATCTCTGACTCCATTAAG--TATTTATATTCTTGATCAGCATTAATAGCAAAGTCGATCTAGCCATGTCCGTCCGTCTGTCCGTCCGTC----C----------GTCTGT
droMoj3	scaffold_6500:18987572-18987764 +		AAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAA--AATT---------------AATCGTA-TTCAAAATT------------------------------------------------------------TATTATACCCTGAACCCATTGAACATG--GGAAATCAGGG--------------TATAATGGTTTTC-TT--------------------AAAAGTATGTAACAGTCAGAAGGAGGCGTGGCAGACCCCACAAAG--TATATATATTCTTGATCAGGGCGACAAGCTCAGTCGATTTTGCCCTGTCCGTCTGTCTGTTCGTC-------------------------
droGri2	scaffold_15013:77670-77891 -		ATAGAA-----------AGTAGTAAAATAAGTAATTA---AGTAA------------------------------------AAGTT-----------AGCAT-----------------CAT----------------------------------------------------------------------------------------------------------------------AAAAAGGA-----------AAACAAAA--TATA---------------AATACTT----CA------------------------------------------------------------------------CTAATACTA-------ATAA-------------------------------T--AACTATGG--------------------AAATATATGTAACAAGTAGAAAGATACATCTCTGATCCCATAAAT--TATGTATATTCTTGATCTAGATCAACAGTCGAGTCGCTCAAGCCAAGTCCAGCTGTTCATGTGT--------ATAATCAAGCCGATCTCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CGGAAG-----------TTTTTATGA--------------AGATGTGGTTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTGTATTAAA-----------AATGATAA--AGTG---------------AGTACTA-CTTCAAATTTAAAGTATTTAAAAGGATATTTTAAACAAAAGAAATT-------------------------------------------------------------------------------TCAT-GGTTCGCTTAAACAAAAAG----GA----AAGTGACTGTTATTGAAAAAGAAAATCGTTTCCTACCATATAAAG--TATGTATATTCTTGATTAGGATCACCAGCCCAGTCGATCTGGCAATGTCCGTACGT----------------ATGATCGTCGAAATCTCG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................GATGTGGTTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTGTATTAAA-----------AA...........................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................TATGA--------------AGATGTGGTTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC..................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................TGA--------------AGATGTGGTTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC..................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................TATGA--------------AGATGTGGTTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTG...............................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AG----GA----AAGTGACTGTTATTGA.........................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CGGAAG-----------TTTTTATGA--------------AGATGTGGTTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTGTATTAAA-----------AATGATAA--AGTG---------------AGTACTA-CTTCAAATTTAAAGTATTTT-----------------------------------------------------------------------------------AAAGGA--------------TATTTT------AAAC--------------------AAAAG----TTATTGAAAAAGAAAATCGTTTCCTATCATATAAAG--TATTTATATTCTTGATTAGGATCACCAGCCCAGTCGATCTGGCAATGTCCGTACGT----------------ATGAACGTCGAAATCTCG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................ATGA--------------AGATGTGGTTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTGT..............................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0
..................TTTTATGA--------------AGATGTGGTTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTGT..............................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	1	1	0	0
.........................................GATGTGGTTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTGTATTAAA-----------AATG.........................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0
..GAAG-----------TTTTTATGA--------------AGATGTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0

dm3

CTGAAG-----------TTTTTATGA--------------AGATGTGGTTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTGTACTAAA-----------AACGACAA--AGTG---------------AGTACTA-CTTAAAATTTTAAGTATTTAAAAAAAT-------------------------------------------------------------------------------------------------ATTTT------TAAC------------------------------AAAAGAGAAAGAAAATCGTTTCCTATTTTATAAAG--TAT--ATAGTCTGGATCAGGATCACTAGCCCAGTCGATTTTGAAATGTCCGTCCGT----------------ATTAACGTCGAAATCTTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCACTAGCCCAGTCGA.....................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAG--TAT--ATAGTCTGGATAG........................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTT------TAAC------------------------------AAAAGAGAAT.....................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCCGT----------------ATTAACGTT.........	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AATTTTTTTTAAAGGTGTTTTTGTAAAA-------------------------------------------------------------------------------------------------------------------------------GAAAAATTAATTTACAATTACAAATTAAAAACAAGCCAAAAAATTTA-------A------------------------------AAATT--------------------------GTAA-------------------------AATT-----------------------------------------------------TTTGTGATAATTATAACCCTTACTC-------GTA--GAGTAAAAGGG--------------TATACTAGATTCGTTA--------------------A-------------AACAGAAGGAAACGTTTCCGACCATATAT-GTATGTTTTTATTCTTGATCAGGATCCATATCCGAGTCTATCTGGCCATATCCGTCCGT----------------ATGAACGTCGAGATTTCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGG--------------TATACTAGATTCGTT..............................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0

droYak3

AATAGG-----------TTTTTTTGT--------------TGTTTTGGCAATAA------------------------------------------------CA-----------------TT-------TTATAAAATAT---AT----AAAAT-----------------------------------TAGTACATTATTTATTTATTATTGGGATTTTGAAATAGATTAG-----------------------------------------------------------------------------------------------------------------------------------GTTATATACCCGTTACTC-------GTA--GATTAAAAGGG--------------TATACTAGATTCGTCG--------------------AAAAGTATGTAACAGGCAGAAGGAAGCGTATCCGACAATATATAG--TATATTTATTCTTGATCAGGATCAATAGCCGAGTCGATCTGACCATGTCCGTCTGT----------------ATGAACGTTGAGATCT--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTGT----------------ATGAACGT..........	21	7	0.29	2	2	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGG--------------TATACTAGATTCGTCG--------------------AAAAG....................................................................................................................................	29	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCCGTCTGT----------------ATGAACG...........	21	7	0.14	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGACCATG...........................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTATTCTTGATCAGGATCAATAGCC............................................................	28	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCTTGATCAGGATCAATAGC.............................................................	25	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGATCT..................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGTA...........................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTGACCATGTCCGTC.....................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTGACCATGTCCG.......................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1

droEug1

TAGGGG-----------TTTTA------------------AGTTTTGGTT------------------ATCAAAAATGCGAATTTT-----------GGCTT-----------------C-------------------------------------------------------------------------------------------------------------------------T------------------------------------------------CCACA-CTCAAC------A------------------------------------------------------GTATTTATACCCGTTACTC-------GTA--GAGTAAAAGGG--------------TATACTAGATTCGTTG--------------------AAAAGTATGTAACAGATAGAAGGAAGCGTTTCCGACCCTATAAAG--TATATATATTCTTGATCAGGATCAATAGCGGAGTCGATTGAGCCATGTCCGTCTGTCCGTCCATCCGT----ATGAATGCTGAGATCTCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAGAAG-----------GCTTTCTAAATATGAATTT----------TATTTATA-----------------------------TCTAATAAACAACCTTAATAATAAACCTTAATTACTAATTCGGTGTTAA------------------------------------------------AAAC------------TAAAT------TTTTAAAAG------------------------------TTT---------------------------------------------C----CGCT-----------------G--AGACCAAATAACAGATTTTTCAGTGCTCGATGGACTT---A-----------------------------------------------------------------------------AAATTGGTGAACTTG--AACTT-GAATTGGTAGAAGGTAGCGTTTCCGACCCCATAAAG--TACAAATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGC-CGT------------ATGAACGTTGAAACC---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAGGTAT----------ACCTACTTA--------------AAATGCTGTTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTGT--CAAA-----------AATC--AA--AACG---------------CCTACTTTCTACAAAGTTACA------------------------------------------------------ATAGTTAAACCCGTTACTC-------GTA--GAGTAAAAGGG--------------TATATTGTATTCGTGC--------------------AAAAGTATGTAACAGCTAGAAGGAAACCTTTCCGACCATATAAAG--TATATATATGATTGATCAGGGTCACTAGCCGAGTCGATACAGCCATGTCCGTCTGTCCGT------------ATGAACGCTGAGATCTCG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAATAG-----------TTTTCA--AATATGTATTCTTTTAAAAA------------------------------------AAATT-----------ATTGT-----------------TTT-----------------------------------------------------------------------------------------------------------------------------------------------AA--AGTG---------------GAAGCTA-G-----------------------------------------------------------ACTT---ATATTTATATCCTT------------GC--------AGAGGA--------------TATTATAATTTCAGTC--------------------AGAAATTTGCATCGCAGTGAAGAAGACAAATCCGACCCTATAAAG--TATATATATTCTTGAATATCATCACTAGGAGAGTCGATCTAGCCATGTCCGTCTGTCCGTC-------------------------CTCG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATAAAG-----------TTTAAT-----------------AGATTTGAAT-ATA-----------------------------------------------CTATGATTGTTAA-----------------------ACAT---AA----ACAAA-----------------------------------GCGAACTATATT-------T------------------------------ATATTGAATATATTTAAAG---------------GATATTTAATTAAATATATTT----CGCT-------------------------------------------------------------TTATTATACCCGTTACTC-------GTA--GAGTAAAAGGG--------------TATATTGTATTCGTGC--------------------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAG--TATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCCGTCCGTATGAACGCTGAGATCTCG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAGCG-----------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGTTG--------------------AAAA-AGTCACACAAAATGAAGGAAGCTCTTGCGACCCCATAGGG--TAAACATATTCTTGGTCGGGATCATCAGGCTAGTCGATCTATGTCTGT----CT-TCCGTTCGT--------AAGAACATCGAGATCTCG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTGATG-----------TTTTTGTGGAC------------AGATAGGATGTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAAAACTACT-----------ACTCGTAG--ACCT---------------CTTAATA-TTTAAAATTTTATGT-----------------------------------------------------TTTTTATACCCTT----------------------GCAGGG--------------TATTATAATTTCAGTC--------------------AGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAG--TATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTTTGTCCGTCTGTC-------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGAAAG-----------ATTTTA-----------------AAAGGTGCTTTACACCGTTGAAAATGTTTTTTTAAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA-TTTCAGTTTCT---TTT-----------------------------------------------------------------------------------TTCAGAGGG--------------TATTATAATTTTGGTC--------------------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAG--TATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCTGTT----TCT-----------ACG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCATGTCCGTCTGTCCG...............................	21	20	0.60	12	12	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGAAGGAGACATCTCCGAC.....................................................................................................	22	20	0.50	10	0	10	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TTCAGAGGG--------------TATTATAATTTTGGTC--------------------.........................................................................................................................................	25	20	0.35	7	0	7	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGCAGTGAAGGAGACATCTCCG.......................................................................................................	25	20	0.30	6	0	0	6	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAAGGAGACATCTCCGACCC...................................................................................................	25	20	0.20	4	4	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTC--------------------AAAAGTGTGCAACGC..........................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATAATTTTGGTC--------------------AAAAGTGTGC...............................................................................................................................	26	20	0.10	2	0	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTGGTC--------------------AAAAGTGTGCAACGCAG........................................................................................................................	28	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCA..................................................................	20	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCATGTCCGTCTGTCCGTCTGTCTGT......................	29	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TTCAGAGGG--------------TATTATAATTTTGGTC--------------------A........................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TTCAGAGGG--------------TATTATAATTTTG................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0

droBip1

CAACTG-----------TTTCCA-GA--------------TGACATCA-------------------------------------------------------------------------TTTGGTGCTACACATATTAT---AC----AA---GACAA-------------------------------------TTTCATGCCCACTTTCAAGGTATTA--------------------------------------------------------------------------------------------TATAAGAAT----------------------------------------ATTTTTATACCCTT------------GC--------AGAGGG--------------TATTATAATTTTGTCC--------------------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAG--TATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTCTGTT----TCT-----------ACG	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGCCAG-----------TAATAAT----------------------------------------------------------------------------------------------------------ACACAAAATATGGTATAAGTAAATT-----------------------------------TA--ACATTATATTATTATT---------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTATACCCGATACTC-------AAAATGAGTATTGGGGTATTTAATATACCGTATATTAGATTTGTGG---TAAAAAG----------GGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAG--TATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGGGCCATGTCTGTCTGTCCGTCCGTC-------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCA.................................................................................................	22	20	4.15	83	0	83	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGT........................................................	23	20	3.25	65	0	0	65	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCCATGTCTGTCTGTCC................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATTGGGCCATGTCTGT......................................	20	2	1.50	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCCATGTCTGTCTGTCCGT..............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGG---TAAAAAG----------GGA......................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATTGGGCCA.............................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGG---TAAAAAG----------GGATGTGTG................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGGGCCAT............................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATTGGGCC..............................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGG---TAAAAAG----------GGATGTG..................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGG---TAAAAAG----------GGATGTA..................................................................................................................................	21	2	1.00	2	0	0	0	0	0	0	0	2	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGGGCCATGTCTGTCTG...................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTGGGC...............................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCCATGTCTGTCTGTCCG...............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAGCCGAGTCGATTG..................................................	21	20	0.95	19	0	19	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAG--TATAT.....................................................................................	25	20	0.85	17	0	17	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCC..................................................................................................	21	20	0.75	15	0	0	15	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCCAGAAGGAATC..............................................................................................................	25	20	0.55	11	0	11	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAG--T.........................................................................................	21	20	0.55	11	0	11	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCC..................................................................................................	20	20	0.35	7	0	7	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TATT---------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTATACCCGATACTC-------AAAA.......................................................................................................................................................................................................	27	6	0.33	2	0	0	0	0	0	0	0	2	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCATGTCTGTCTGTCCGT..............................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGG---TAAAAAG----------GGATGTGTAC...............................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	1	0	0	0
.................TAATAAT----------------------------------------------------------------------------------------------------------ACACAAAATATGGTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	8	0.25	2	0	0	0	0	0	0	0	2	0	0
.....................AAT----------------------------------------------------------------------------------------------------------ACACAAAATATGGTATAAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	8	0.25	2	0	0	0	0	0	0	0	2	0	0
.....................AAT----------------------------------------------------------------------------------------------------------ACACAAAATATGGTATAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	8	0.25	2	0	1	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCCAGAAGGA.................................................................................................................	22	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.....................AAT----------------------------------------------------------------------------------------------------------ACACAAAATATGGTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	8	0.25	2	0	0	0	0	0	0	0	2	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGGGCCATGTCTGTC.....................................	19	4	0.25	1	0	0	0	0	0	1	0	0	0	0
.......................T----------------------------------------------------------------------------------------------------------ACACAAAATATGGTATAAGTAAATT-----------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGC.............................................................	22	20	0.15	3	0	0	3	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAATCGTTTCCGACCCCAT................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAG--TATATATA..................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.....................AAT----------------------------------------------------------------------------------------------------------ACACAAAATATGGTATAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	8	0.13	1	0	0	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TC-------AAAATGAGTATTGGGGTATTT......................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TT---------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTATACCCGATACT...................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGTCCAGAAGGAATCG.............................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGTTTCCGACCCCATAA..............................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGA.....................................................	26	20	0.10	2	0	0	0	0	0	0	2	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGA......................................................................................................	20	20	0.10	2	0	0	0	0	0	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGTCTGTCCGTCCGTC-------------------------	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..............................................................................................................................................................................................................TATT---------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTATACCCGATACT...................................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ATT---------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTATACCCGATACC...................................................................................................................................................................................................................	21	13	0.08	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAG--TATATATATTC...............................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAGCCGAGTCGAT....................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAAGGAATCGTTTCCGACCCC..................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGTCTGTCCGTCCGTC-------------------------	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................ATTTTTATACCCGATACTC-------A..........................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCGAG.........................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGCCG...........................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCCAGAAGG..................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG--TATATATATTCTTGATCA........................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAG--TATATATATTCTTGATCAGCATC...................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGT........................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAATCGTTTCCGACCCC..................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTCCGAC.....................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAG..............................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTCCAGAAGGAATCGTTTCCG.......................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGTCTGTCCGTCCGT..........................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAATAGCCGAGTCGATTG..................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TACTC-------AAAATGAGTATTGGGGT..........................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTAGATTTGTGG---TA........................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

CAAAATTTTTAGTA---A---TATTA--------------AAATGTTCTT--------------------------------------------------------------------------------TTACATAATAT---AT----AAATA-----------------------------------TTGCTT---------------------------------------------------------------------------AT---------------A-----------ATTC-----------------------------------------------------TTT---GTGTTTATACCCGATACTC-------AAAATGAGTATTGGGG--------------TATATTAGATTTGTGG---TAAAAGT----------GGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAG--TATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCTGTC-------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

TTATTA-----------------TTA--------------AAAT--TGTTTATA-----------------------------GTATATTAAATAAATAAATTATATATATTAAATATAAAT------------------------------TTA----A-------------------TTAAA------------TATAT------ATTATTAAG------------------------------TATACAAATAAAA---------------GAAATATAATTAAAA--------------------------------------------------------------------------------ATATAATT------------GC------AAAAAGGG--------------TATATTAATTTTGGTC--------------------A---------------TAAAAGGAAGCATCTGCGACCATATAAAG--TATATATATTCTTGATCAGCATGAC-----GAGACGAGTTAGCCATGTCCGTCCGTCCGTCCGTCTGG----ATCA-----------ACG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................AGGG--------------TATATTAATTTTGGTC--------------------A---------------T........................................................................................................................	22	9	0.11	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATGAC-----G...........................................................	21	20	0.10	2	0	0	0	2	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCGTCTGG----ATCA-----------ACG	18	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCCGTCCGTCCGTCTGG----A.................	21	20	0.05	1	0	0	0	1	0

droVir3

AGAAAC-----------G---------------------------------------------------------------AAGTT-----------AGTTT-----------------TTT---------------------------------------------------------------------------------------------------GAAACAGAAATGGTACCCTGTATTGAAGGGACTGGAAGGGTGACAGGCTGGT---------------A-----------ACAC------------------------------------------------------------TTTTTATACCCTGAACCCATTAAAAGTG--GTTAAAACGGG--------------TATAATGTCTTTGTTC----AAATTT----------AAATGTATGTTACAGGCAGAAGGAAACATCTCTGACTCCATTAAG--TATTTATATTCTTGATCAGCATTAATAGCAAAGTCGATCTAGCCATGTCCGTCCGTCTGTCCGTCCGTC----C----------GTCTGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................CAGAAATGGTACCCTGTATTGAAGGGACT..................................................................................................................................................................................................................................................................................................................................................	29	20	14.45	289	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	286	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGACAGGCTGGT---------------A-----------ACAC------------------------------------------------------------TTTTTATA............................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGACAGGCTGGT---------------A-----------ACAC------------------------------------------------------------TTTTTATACCCT........................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGACAGGCTGGT---------------A-----------ACAC------------------------------------------------------------TTTTTA..............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGACAGGCTGGT---------------A-----------ACAC------------------------------------------------------------TTTTTAT.............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGACAGGCTGGT---------------A-----------ACAC------------------------------------------------------------TTTTTATAC...........................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGTCTTTGTTC----AAATTT----------AAATGTA..................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CAGAAATGGTACCCTGTATTGAA........................................................................................................................................................................................................................................................................................................................................................	23	20	0.65	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ACAGAAATGGTACCCTGTATTGAAGGGA....................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ACAGAAATGGTACCCTGTATTGAAG.......................................................................................................................................................................................................................................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ACAGAAATGGTACCCTGT..............................................................................................................................................................................................................................................................................................................................................................	18	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.................................................................................................................................................................................................................................CAGAAATGGTACCCTGTATTGAAGG......................................................................................................................................................................................................................................................................................................................................................	25	20	0.35	7	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CTGGAAGGGTGACAGGCTGGT---------------A-----------AC..................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................CAGAAATGGTACCCTGTATT...........................................................................................................................................................................................................................................................................................................................................................	20	20	0.30	6	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CAGAAATGGTACCCTGTATTGAAGGG.....................................................................................................................................................................................................................................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GGTACCCTGTATTGAAGG......................................................................................................................................................................................................................................................................................................................................................	18	20	0.30	6	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TACCCTGTATTGAAGGGACTGGAA..............................................................................................................................................................................................................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GAAATGGTACCCTGTATTGAAGGGAC...................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TATTGAAGGGACTGGAAGGGTGAC.......................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AGAAATGGTACCCTGTATTGAAG.......................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATTAATAG..............................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CCTGTATTGAAGGGACTGGAAGGGTG.........................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TGTATTGAAGGGACTGGAAGGGTGA........................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TTATACCCTGAACCCATTAAAAGTG--G.....................................................................................................................................................................................................	26	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ACCCTGAACCCATTAAAAGT.........................................................................................................................................................................................................	20	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATTA..................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TTGAAGGGACTGGAAGGGTGAC.......................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TACCCTGTATTGAAGGGACTGGAAG.............................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GGGACTGGAAGGGTGACAGGCT..................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CAGAAATGGTACCCTGTATTGAAGGGAC...................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TACCCTGTATTGAAGGGA....................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCCGTCTG...............................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TGGTACCCTGTATTGAAGGGACT..................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AAATGGTACCCTGTATTGAAGG......................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GTATTGAAGGGACTGGAAGGGTGAC.......................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TGTATTGAAGGGACTGGA...............................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AGAAATGGTACCCTGTATTGAAGGGACT..................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATTAATA...............................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TTGAAGGGACTGGAAGGGTG.........................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TACCCTGTATTGAAGGGACTGGAAGG............................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CAGAAATGGTACCCTGTATTGAAG.......................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TTGAAGGGACTGGAAGGGTGACA......................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TACCCTGTATTGAAGGGACT..................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAA--AATT---------------AATCGTA-TTCAAAATT------------------------------------------------------------TATTATACCCTGAACCCATTGAACATG--GGAAATCAGGG--------------TATAATGGTTTTC-TT--------------------AAAAGTATGTAACAGTCAGAAGGAGGCGTGGCAGACCCCACAAAG--TATATATATTCTTGATCAGGGCGACAAGCTCAGTCGATTTTGCCCTGTCCGTCTGTCTGTTCGTC-------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................TG--GGAAATCAGGG--------------TATAATGGT....................................................................................................................................................................	22	20	4.15	83	83	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TG--GGAAATCAGGG--------------TATAATGGTTTTC-...............................................................................................................................................................	26	20	0.20	4	3	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAAGGAGGCGTGGCAGACCCC..................................................................................................	25	5	0.20	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................CATG--GGAAATCAGGG--------------TATAATGGTTT..................................................................................................................................................................	26	12	0.08	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGTCAGAAGGAGG...............................................................................................................	21	12	0.08	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................CATG--GGAAATCAGGG--------------TATAATGGT....................................................................................................................................................................	24	13	0.08	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGCCCTGTCCGTCTGT..................................	21	16	0.06	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TG--GGAAATCAGGG--------------TATAATGGTTTTC-T..............................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AATCAGGG--------------TATAATGGTTTTC-...............................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGGC....................................................................	21	20	0.05	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGGCGACAAG..............................................................	20	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGGCGACAA...............................................................	21	20	0.05	1	1	0	0	0	0	0

droGri2

ATAGAA-----------AGTAGTAAAATAAGTAATTA---AGTAA------------------------------------AAGTT-----------AGCAT-----------------CAT----------------------------------------------------------------------------------------------------------------------AAAAAGGA-----------AAACAAAA--TATA---------------AATACTT----CA------------------------------------------------------------------------CTAATACTA-------ATAA-------------------------------T--AACTATGG--------------------AAATATATGTAACAAGTAGAAAGATACATCTCTGATCCCATAAAT--TATGTATATTCTTGATCTAGATCAACAGTCGAGTCGCTCAAGCCAAGTCCAGCTGTTCATGTGT--------ATAATCAAGCCGATCTCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_17423

2r:1583525-1583674 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-18.0	-17.9	-17.8