dsi_17420

exon [2l_6812470_6814072_+]; CDS [2l_6812470_6814072_+]; exon [2l_6812077_6812355_+]; CDS [2l_6812077_6812355_+]; intron [2l_6812356_6812469_+]

##################################################------------------------------------------------------------------------------------------------------------------################################################## CGAGCTCATCTCTGTGCTTACCAACGATGCAGACGATGGCACAGATACTGGTGAGTTAAACACAGATAACGTTATCTACATGGGTAGATAAGTGAACAAGAAATCAACTTTGTATAAGTGCGAAAGTACTTCATGACTAATTATATATAATTGTCTCTTCACAGACACTCCCACCATGTCGAAGTCTATAACTTTGGATCTACTGCAGCGCAAG ************************************************((((((((........)))).((((((((....))))))))....(((((........)))))..((((((....))))))...(((.(((((....))))))))...))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs
.................................................................................................................................................................CTGACACTCCCACCATGT...................................	18	1	1	4.00	4	4	0	0	0	0	0	0	0
..........................................................................................................................................................................................TATAACTTTGGATCTACTGCAGCGCAA.	27	0	1	3.00	3	0	1	0	1	0	1	0	0
.........................................................................................................................................................................................CTATAACTTTGGATCTACT..........	19	0	1	2.00	2	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................CTATAACTTTGGATCTACC..........	19	1	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................TCTATAACTTTGGATCTACTGCAG......	24	0	1	1.00	1	0	0	0	0	1	0	0	0
...............GCTTACCAACGATGCAGAC....................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0
.................................................................................................................................................................................GTCGAAGTCTATAACTTT...................	18	0	1	1.00	1	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................TATAACTTTGGATCTACTGC........	20	0	1	1.00	1	0	1	0	0	0	0	0	0
......CATCTCTGTGCTTACCAACGA...........................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................TCTATAACTTTGGATCTACTGCAGCGCA..	28	0	1	1.00	1	0	0	0	0	0	0	1	0
...............GCTTACCAACGATGCAGACGGT.................................................................................................................................................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................CTATAACTGTGGATCTACT..........	19	1	1	1.00	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................CGAAGTCTATAACTTTGGATCTACT..........	25	0	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................TATAACTTTGGATCTACTGCAGCGCA..	26	0	1	1.00	1	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................CTTTGGATCTACTGCAGCGC...	20	0	1	1.00	1	0	1	0	0	0	0	0	0
......................AACGATGCAGACGATGGCAC............................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................TCTCTAACTTTGGATCTACTGCAGCG....	26	1	1	1.00	1	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................CTTTGGATCTACTGCAGCGCAAG	23	0	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................GTCTATAACTTTGGATCTACTGCAGCGC...	28	0	1	1.00	1	0	1	0	0	0	0	0	0
...............GCTTACCAACGATGCAGACGAT.................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0
....................................................................................................................................................................................TAGGTCTATAACTTCGGATC..............	20	3	3	0.33	1	0	0	0	0	0	0	0	1
...........................................GATACTGGTCAGTTA............................................................................................................................................................	15	1	3	0.33	1	0	0	0	0	0	0	0	1
..........................................CGATACTGGTCAGTTA............................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1
..........................................CGATACTGGTGAGCTAGA..........................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	1	0	0	0
...............................................................................................................GTCTAAGTGTGAAAGTA......................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	1

GCTCGAGTAGAGACACGAATGGTTGCTACGTCTGCTACCGTGTCTATGACCACTCAATTTGTGTCTATTGCAATAGATGTACCCATCTATTCACTTGTTCTTTAGTTGAAACATATTCACGCTTTCATGAAGTACTGATTAATATATATTAACAGAGAAGTGTCTGTGAGGGTGGTACAGCTTCAGATATTGAAACCTAGATGACGTCGCGTTC ************************************************((((((((........)))).((((((((....))))))))....(((((........)))))..((((((....))))))...(((.(((((....))))))))...))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553488 RT_0-2 hours eggs	M053 female body	SRR618934 dsim w501 ovaries	GSM343915 embryo
...............................................................................................................................TGAAGTACTGATTAATATATA..................................................................	21	0	1	2.00	2	2	0	0	0	0
.......................................................AATTTGGGTCTAGTGCA..............................................................................................................................................	17	2	15	0.07	1	0	1	0	0	0
.....................................................TCAAGTTGTTTCTATTGC...............................................................................................................................................	18	2	17	0.06	1	0	0	1	0	0
..................................................................................................................................................................................AGCTTCAGATTTTTAAAGC.................	19	3	20	0.05	1	0	0	0	0	1
............CCAAGAATGGTAGCTACG........................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	2l:6812306-6812519 +	dsi_17420	CGAGCTCATCTCTGTGCTTACCAACGATGCAGACGATGGCACAGATACTGGTGAGTTAA---------------------------ACACAGATAACGT-------TATCTACATGGGTAG---ATAAGTGAACAAG-----------------------AAATCAACTTTGTAT------------------------------------------------------AAGTGCGAAAGTAC-------------------------------------------------------------------------------------------------------------------------------------------------TTC--------------------------------------------------------------A-TG-ACTAATTATATATAATTGT------C--TCTTCACAGACACTCCCACCATGTCGAAGTCTATAACTTTGGATCTACTGCAGCGCAAG
droSec2	scaffold_3:2576488-2576701 +		CGAGCTCATCTCTGTGCTTACCAACGATGCAGACGATGGCACAGATACTGGTAAGTTAA---------------------------ACACAGATATCGT-------TATCTATATGGGTAG---ATAAGTGATCAAG-----------------------AAATAAACTTTGTAT------------------------------------------------------AAGTGCGAAAGTAC-------------------------------------------------------------------------------------------------------------------------------------------------TTC--------------------------------------------------------------A-TG-ACTAATTATATATAATTGT------C--TCTTCACAGACACTCCCACCATGTCGAAGTCTATAACTTTGGATCTGCTGCAGCGCAAA
dm3	chr2L:7051596-7051809 +		CGAGCTCATCTCTGTGCTTACCAACGATGCAGACGATGGCACAGATACTGGTGAGTTAA---------------------------AAACAGATAACGT-------AATCTATATGGGTAG---ATAAGTGAGCAAA-----------------------AAATCAACTTTGTAT------------------------------------------------------AAGTCAGAAAGTAC-------------------------------------------------------------------------------------------------------------------------------------------------TTC--------------------------------------------------------------A-TG-ACTAATTATATATAATTTT------C--GCTCCACAGACACTCCCACCATGTCGAAGTCTATAACTTTGGATCTACTGCAGCGCAAG
droEre2	scaffold_4929:15962555-15962780 +		CGAGCTCATCTCTGTGCTTACCAACGACGCAGATGATGGCACAGATACTGGTGAGTAAA---------------------------ACACAGATAACGT-------AATCTATATGGGTAG---ATAAGTGACCAAA-----------------------AGATCAACGTTGAAT------------------------------------------------------AACTCCAATAGCAC-------------------------------------------------------------------------------------------------------------------------------------------------TTA--------------------------------------------------ATTCGTGATTTAA-TG-ACTAATTATATTTAATTGT------T--GCTCCACAGACACTCCCACCATGTCGAAGTCTATAACTTTGGATCTACTGCAGCGCAAG
droYak3	2L:5861094-5861308 -		CGAGCTCATCTCTGTGCTTACCAACGATGCAGACGATGGCACAGATACTGGTGAGTAAA---------------------------GCACAGATAACGT-------AATCTATACGGGTAG---ATAAGTGACCGAA-----------------------ATATCAACATTG-----------------------------------------------------------------AAGTAC-------------------------------------------------------------------------------------------------------------------------------------------------TTT--------------------------------------------------TTTCGTGATTAAA-TG-ACTAATTATATGCAATTGT------T--GCTCCACAGACACTCCCACCATGTCGAAGTCTATAACTTTGGATCTACTGCAGCGCAAG
droEug1	scf7180000409463:180119-180222 +		AAG-------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGAATTTT---T------------------------------------------------------AATTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AT-ATTTTTTATGTTTACA-----TTTTA--TTTCCACAGACACTCCCACCATGTCGAAGTCCATTACTCTGGACCTTCTGCAGCGCAAG
droBia1	scf7180000302422:8700853-8701118 +		CGAACTCATCTCCGTGCTGACCAACGATGCAGACGATGGCACAGATACTGGTGAGTTCT---------------------------CC--------------TTAACAATTG------AGA---TAATATCA-----ACTTAAGATCATAAGATATAAAAGAAAAACTT------ATATCGTTATTCAAA------------------------------------------------------------------------------------------------------------------------------TTTTT-------------------AAAATAGAAAT-----------GC------ATAGCTTAAAATTGTTTTATTAATATTTATTTTATTTTATTTTA---------------------------------------A-AT-ACTATT------TA-------TTTTA--TTTTCACAGACACTCCCACCATGTCGAAGTCCATCACCCTGGACCTGCTGCAGCGCAAG
droTak1	scf7180000416008:320631-320723 +		AAATCACATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AT-ATTAATTATTTTTATTTTC-----AA--TTTCCACAGACACCCCCACCATGTCAAAGTCCATTACCCTGGACCTGCTGCAGCGCAAG
droEle1	scf7180000490640:234448-234504 -		CGAACTTATATCAGTGCTTACCAACGATGCAGACGATGGCACGGATACTGGTGGGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779930:165104-165191 +		A-------TTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AT-ACTTAATACGTTTATTTGC-----TA--TTTCCACAGACACGCCCACCATGTCCAAGTCCATAACCTTGGATCTTTTGCAGCGCAAG
droFic1	scf7180000454111:822681-822747 +		CGAGCTAATTTCGGTGCTAACCAACGATGCGGACGATGGCACGGATACTGGTGAGTTAT---------------------------GTACATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302468:555919-556176 +		CGAGCTCATTTCGGTGCTGACAAATGATGCGGACGATGGCACGGATACTGGTGAGTGTTTAAGGATTTTTAAAAAATTTAAGCTGTACAGTGATA----------------------------------------------------------CAAAAAAGA---GCCA------GTAAGGCTG---CAA------------------------------------------------------------------------------------------------------------------------------TTTCAAAGCGAGCAATGTTTAATAAAAGTAGAAAT---------TGGC------ATA--------------------------TTTTA--TTATTTCAATTGGTATATAATCCAAACA-----------------------------------------TC-----AA--TTTTTGCAGATACGCCCACAATGTCCAAGTCGATTACCCTGGATCTTCTGCAGCGCAAG
droAna3	scaffold_12916:122357-122616 +		CGAGCTCATCTCGGTGCTGACCAACGATGCAGATGATGGCACGGATGCAGGTGAGTGCCTTTGGGGTGT--ACTTAGCTCAGGCGTACATGGATAGTCTTCTTCAATAGCTGCAATAGGAAGTTAGGGATTAGCCAAATTGGAGACCACAAAAGCTTGAAAAATAGCTTCG---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT-----------------------------------------------------------------------------------T--------CGAAAC-ACTTA----GTTTAATTGC--CCTTT--CATTTGCAGACACGCCCACCATGTCCAAGTCCATTACCCTGGACTTGTTGCAGCGGAAA
droBip1	scf7180000396554:2159344-2159502 -		TGAGCTCATTTCGGTGCTGACCAACGATGCAGATGATGGCACGGATGCAGGTGAGTGCC---------------------------T----------------------------TTGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTTTTGG-------------------------------------------------------------------------------------------A-AAAATTAACTAAATTCCCTTTC------T--CTTATAAAGACACCCCCACCATGTCCAAGTCCATTACACTGGACTTGTTGCAACGGAAA
dp5	4_group1:3591299-3591468 -		CGAACTGATTTCGGTGCTGACCAACGACGCAGATGATGGTACAGATACGGGTAGGATTT---------------------------GC-------------------------ACTCGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGTCTCGGAAGTAGTA-----------------TAGTA--------------------------------------ACAG------------------------------TATGTATG-----TATCTTC--CCCCCGTAGAAACCCCCACCATGTCCAAGTCCATTACGTTGGACCTCCTCCAGCGAAAG
droPer2	scaffold_5:1622001-1622170 +		CGAACTGATTTCGGTGCTGACCAACGACGCAGATGATGGTACAGATACGGGTAGGATTT---------------------------GC-------------------------ACTCGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGTCTCGGAAGTAGTA-----------------TAGTA--------------------------------------ACAG------------------------------TATGTATG-----TATCTTC--CCCCCGTAGAAACCCCCACCATGTCCAAGTCCATTACGTTGGACCTCCTCCAGCGAAAG
droWil2	scf2_1100000004521:5131015-5131181 +		TGAACTTATTTCGGTGCTAACAGATGATGCGGATGATGGAACAGATGCGGGTAAGCTAA---------------------------CTAGAAATTTGGT-------G---------------------TATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAAAAT-GGGTA------------------------------------------------------------------------------------------AA-ACTAA-------TA-----TATTTTGCTTTGATTCAGACACTCCCACCATGTCCAAATCGGTAACATTGGATCTGCTGCAAAAGAAG
droVir3	scaffold_12723:2861152-2861320 -	dvi_1388	TGAACTGATTTCGGTGCTAACAAACGACGCGGACGATGGAACCGATGCGGGCAAGTTGC---------------------------TTA-------------------------GTTGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTGATAAGGCATA-TA-----------------AATTA--------------------------------------ATAG------------------------------TGAACTAT-----TTTGGGC--AACCTATAGACACGCCTACCATGTCCAAATCAATAACCCTGGACCTGCTGCAGAAGAAG
droMoj3	scaffold_6500:16124926-16125086 -		CGAACTAATTTCGGTGCTCACCAACGATGCAGACGATGCAACTGATGCGGGTAAGTTGA---------------------------ATAAAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAAT-AGGCAAG-TA-----------------G--TA--------------------------------------ATAA------------------------------TGAAC----------TCATC--CACCTTTAGATACGCCTACCATGTCAAAGTCGATCACTCTGGACCTGCTGCAGAAGAAA
droGri2	scaffold_15126:631974-632296 +		TGAACTGATTTCGGTGCTAACCAACGATGCAGACGATGGCACCGATGGGGGTAAGTCAG---------------------------CA----------T-------CAGCTACACTCGGAA---AAAAATCAGCTAAAT------------------------------TTGTGTAAATCGCCTTACAAAATGGAAAATTGTTCTTGATTTTAGAAACAATTAATAAATATTAAG--------AATAGTTTTTAGGCTTTAGAAATAATTTAACGATTTACTAAAATTTAGTACGATTTTTAAACTATATTAACGAACT--------------------------------------AT-AAGCGAA-TA-----------------A--TA--------------------------------------ATGATCAACTTCT--------CGTA--------------------------------ACAATTAGATACGCCAACGATGTCCAAGTCGATAACGCTGGATCTGCTGCAGAAGAAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CGAGCTCATCTCTGTGCTTACCAACGATGCAGACGATGGCACAGATACTGGTGAGTTAA---------------------------ACACAGATAACGT-------TATCTACATGGGTAG---ATAAGTGAACAAG-----------------------AAATCAACTTTGTAT------------------------------------------------------AAGTGCGAAAGTAC-------------------------------------------------------------------------------------------------------------------------------------------------TTC--------------------------------------------------------------A-TG-ACTAATTATATATAATTGT------C--TCTTCACAGACACTCCCACCATGTCGAAGTCTATAACTTTGGATCTACTGCAGCGCAAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACTTTGGATCTACTGCAGCGCAA.	27	1	3.00	3	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAACTTTGGATCTACT..........	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAACTTTGGATCTACC..........	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATAACTTTGGATCTACTGCAG......	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............GCTTACCAACGATGCAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGTCTATAACTTT...................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACTTTGGATCTACTGC........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CATCTCTGTGCTTACCAACGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATAACTTTGGATCTACTGCAGCGCA..	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTCTATAACTTTGGATCTACT..........	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACTTTGGATCTACTGCAGCGCA..	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGATCTACTGCAGCGC...	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AACGATGCAGACGATGGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGATCTACTGCAGCGCAAG	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAACTTTGGATCTACTGCAGCGC...	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GCTTACCAACGATGCAGACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CGAGCTCATCTCTGTGCTTACCAACGATGCAGACGATGGCACAGATACTGGTAAGTTAA---------------------------ACACAGATATCGT-------TATCTATATGGGTAG---ATAAGTGATCAAG-----------------------AAATAAACTTTGTAT------------------------------------------------------AAGTGCGAAAGTAC-------------------------------------------------------------------------------------------------------------------------------------------------TTC--------------------------------------------------------------A-TG-ACTAATTATATATAATTGT------C--TCTTCACAGACACTCCCACCATGTCGAAGTCTATAACTTTGGATCTGCTGCAGCGCAAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAACTTTGGATCTGCTGCAGCGCA..	27	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAACTTTGGATCTGCTGC........	23	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGATCTGCTGCAGCGCAA.	21	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATAACTTTGGATCTGCTGC........	22	1	1.00	1	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTTTGGATCTGCTGCAGCGC...	24	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTTTGGATCTGCTGCAGC.....	21	1	1.00	1	1	0	0	0
.................TTACCAACGATGCAGACGATGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAACTTTGGATCTGCTGCA.......	24	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCTGCTGCAGCGCAAA	20	1	1.00	1	1	0	0	0

dm3

CGAGCTCATCTCTGTGCTTACCAACGATGCAGACGATGGCACAGATACTGGTGAGTTAA---------------------------AAACAGATAACGT-------AATCTATATGGGTAG---ATAAGTGAGCAAA-----------------------AAATCAACTTTGTAT------------------------------------------------------AAGTCAGAAAGTAC-------------------------------------------------------------------------------------------------------------------------------------------------TTC--------------------------------------------------------------A-TG-ACTAATTATATATAATTTT------C--GCTCCACAGACACTCCCACCATGTCGAAGTCTATAACTTTGGATCTACTGCAGCGCAAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATCTACTGCAGCGCAAG	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGGATCTACTGCAGCGC...	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTTTGGATCTACTGCAGCGC...	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACTTTGGATCTACTGCAGCGCA..	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACCAACGATGCAGACGATGGCACAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATCTACTGCAGCGCAA.	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0
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CGAGCTCATCTCTGTGCTTACCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCGAAGTCTATAAC......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TACCAACGATGCAGACGATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTATAACTTTGGATCTACTGC........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CGATGCAGACGATGGCACAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATTTT------C--GCTCCACAGAC................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTTTGGATCTACTGCAG......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................AGTAC-------------------------------------------------------------------------------------------------------------------------------------------------TTC--------------------------------------------------------------A-TG-ACTAATT................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CGAGCTCATCTCTGTGCTTACCAACGACGCAGATGATGGCACAGATACTGGTGAGTAAA---------------------------ACACAGATAACGT-------AATCTATATGGGTAG---ATAAGTGACCAAA-----------------------AGATCAACGTTGAAT------------------------------------------------------AACTCCAATAGCAC-------------------------------------------------------------------------------------------------------------------------------------------------TTA--------------------------------------------------ATTCGTGATTTAA-TG-ACTAATTATATTTAATTGT------T--GCTCCACAGACACTCCCACCATGTCGAAGTCTATAACTTTGGATCTACTGCAGCGCAAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............GTGCTTACCAACGACGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGAAGTCTATAACTTTG..................	21	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAACTTTGGATCTACT..........	19	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................CTATATGGGTAG---ATAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAACTTTGGATCTACTGC........	21	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAACTTTGGATCTACTGCA.......	24	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAACTTTGGATCTACTGCAGCGC...	28	1	1.00	1	0	1	0	0	0	0	0
.............GTGCTTACCAACGACGCAGATGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
............TGTGCTTACCAACGACGCAGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
................CTTACCAACGACGCAGATGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.............GTGCTTACCAACGACGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTATAACTTTGGATCTACTGC........	24	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGGATCTACTGCAG......	18	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAACTTTGGATCTACTGCAGCGCA..	27	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGGATCTACTGCAGC.....	20	1	1.00	1	0	1	0	0	0	0	0
.......................ACGACGCAGATGATGGCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCACCATGTCGAAGTCT...........................	19	1	1.00	1	1	0	0	0	0	0	0
........................CGACGCAGATGATGGCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTTTGGATCTACTGCAGCGC...	24	1	1.00	1	0	0	0	0	0	1	0
.................TTACCAACGACGCAGATGATGGCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGATCTACTGCAGCGCAAG	23	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTATAACTTTGGATCTACT..........	22	1	1.00	1	1	0	0	0	0	0	0
.................................TGATGGCACAGATACTGACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	1	0	0	0	0	0	0

droYak3

CGAGCTCATCTCTGTGCTTACCAACGATGCAGACGATGGCACAGATACTGGTGAGTAAA---------------------------GCACAGATAACGT-------AATCTATACGGGTAG---ATAAGTGACCGAA-----------------------ATATCAACATTG-----------------------------------------------------------------AAGTAC-------------------------------------------------------------------------------------------------------------------------------------------------TTT--------------------------------------------------TTTCGTGATTAAA-TG-ACTAATTATATGCAATTGT------T--GCTCCACAGACACTCCCACCATGTCGAAGTCTATAACTTTGGATCTACTGCAGCGCAAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAACTTTGGATCTACTGCAGC.....	24	1	5.00	5	3	1	0	0	0	0	1	0	0	0	0
.............GTGCTTACCAACGATGCAGACGATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
....CTCATCTCTGTGCTTACCAACGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTTTGGATCTACTGC........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............GTGCTTACCAACGATGCAGACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACTTTGGATCTACTGCAGCGC...	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................GACGATGGCACAGATACTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............GTGCTTACCAACGATGCAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............GCTTACCAACGATGCAGACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........CTCTGTGCTTACCAACGATGCAGACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTTTGGATCTACTGCA.......	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTTTGGATCTACTGCA.......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................AACGATGCAGACGATGGCACAGATACTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTCTATAACTTTGGATCTACTGCA.......	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCCCACCATGTCGAAGTCT...........................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGATCTACTGCAGCGCAA.	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTTTGGATCTACTGCAGCGCAA.	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................CTTACCAACGATGCAGACGATGGCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................TTACCAACGATGCAGACGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTTTGGATCTACTGCAGC.....	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............GCTTACCAACGATGCAGACGATGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAACTTTGGATCTACTGC........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................ATGCAGACGATGGCACAGATACTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...GCTCATCTCTGTGCTTACCAACGATGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAACTTTGGATCTACTGCAGCGCAAG	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................CAACGATGCAGACGATGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................CTTACCAACGATGCAGACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................CTTACCAACGATGCAGACGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............TGCTTACCAACGATGCAGACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGATCTACTGCAGCGCAA.	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAACTTTGGATCTACTGC........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAACTTTGGATCTACTGCA.......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........CTCTGTGCTTACCAACGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGGATCTACTGCAGCG....	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............GTGCTTACCAACGATGCAGACGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................ACCAACGATGCAGACGATGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................CCAACGATGCAGACGATGGCACAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................GACGATGGCACAGATACTGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AAG-------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGAATTTT---T------------------------------------------------------AATTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AT-ATTTTTTATGTTTACA-----TTTTA--TTTCCACAGACACTCCCACCATGTCGAAGTCCATTACTCTGGACCTTCTGCAGCGCAAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGAACTCATCTCCGTGCTGACCAACGATGCAGACGATGGCACAGATACTGGTGAGTTCT---------------------------CC--------------TTAACAATTG------AGA---TAATATCA-----ACTTAAGATCATAAGATATAAAAGAAAAACTT------ATATCGTTATTCAAA------------------------------------------------------------------------------------------------------------------------------TTTTT-------------------AAAATAGAAAT-----------GC------ATAGCTTAAAATTGTTTTATTAATATTTATTTTATTTTATTTTA---------------------------------------A-AT-ACTATT------TA-------TTTTA--TTTTCACAGACACTCCCACCATGTCGAAGTCCATCACCCTGGACCTGCTGCAGCGCAAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAATCACATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AT-ATTAATTATTTTTATTTTC-----AA--TTTCCACAGACACCCCCACCATGTCAAAGTCCATTACCCTGGACCTGCTGCAGCGCAAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGAACTTATATCAGTGCTTACCAACGATGCAGACGATGGCACGGATACTGGTGGGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A-------TTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AT-ACTTAATACGTTTATTTGC-----TA--TTTCCACAGACACGCCCACCATGTCCAAGTCCATAACCTTGGATCTTTTGCAGCGCAAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGAGCTAATTTCGGTGCTAACCAACGATGCGGACGATGGCACGGATACTGGTGAGTTAT---------------------------GTACATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGAGCTCATTTCGGTGCTGACAAATGATGCGGACGATGGCACGGATACTGGTGAGTGTTTAAGGATTTTTAAAAAATTTAAGCTGTACAGTGATA----------------------------------------------------------CAAAAAAGA---GCCA------GTAAGGCTG---CAA------------------------------------------------------------------------------------------------------------------------------TTTCAAAGCGAGCAATGTTTAATAAAAGTAGAAAT---------TGGC------ATA--------------------------TTTTA--TTATTTCAATTGGTATATAATCCAAACA-----------------------------------------TC-----AA--TTTTTGCAGATACGCCCACAATGTCCAAGTCGATTACCCTGGATCTTCTGCAGCGCAAG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGAGCTCATCTCGGTGCTGACCAACGATGCAGATGATGGCACGGATGCAGGTGAGTGCCTTTGGGGTGT--ACTTAGCTCAGGCGTACATGGATAGTCTTCTTCAATAGCTGCAATAGGAAGTTAGGGATTAGCCAAATTGGAGACCACAAAAGCTTGAAAAATAGCTTCG---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT-----------------------------------------------------------------------------------T--------CGAAAC-ACTTA----GTTTAATTGC--CCTTT--CATTTGCAGACACGCCCACCATGTCCAAGTCCATTACCCTGGACTTGTTGCAGCGGAAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......CATCTCGGTGCTGACCAACGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................GACCAACGATGCAGATGATGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTACCCTGGACTTGTTGCAGC.....	24	1	1.00	1	1	0	0	0	0	0
.........................GATGCAGATGATGGCACGGATGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................GACCAACGATGCAGATGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACGCCCACCATGTCCAAGT.............................	22	1	1.00	1	1	0	0	0	0	0
..............................AGATGATGGCACGGATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...............................GATGATGGCACGGATGCAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTACCCTGGACTTGTTGCA.......	22	1	1.00	1	0	1	0	0	0	0
...................................................................GT--ACTTAGCTCAGGCGTACATGGATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACCCTGGACTTGTTGCAGCG....	23	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGCCCACCATGTCCAAGT.............................	21	1	1.00	1	1	0	0	0	0	0

droBip1

TGAGCTCATTTCGGTGCTGACCAACGATGCAGATGATGGCACGGATGCAGGTGAGTGCC---------------------------T----------------------------TTGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCTTTTGG-------------------------------------------------------------------------------------------A-AAAATTAACTAAATTCCCTTTC------T--CTTATAAAGACACCCCCACCATGTCCAAGTCCATTACACTGGACTTGTTGCAACGGAAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

CGAACTGATTTCGGTGCTGACCAACGACGCAGATGATGGTACAGATACGGGTAGGATTT---------------------------GC-------------------------ACTCGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGTCTCGGAAGTAGTA-----------------TAGTA--------------------------------------ACAG------------------------------TATGTATG-----TATCTTC--CCCCCGTAGAAACCCCCACCATGTCCAAGTCCATTACGTTGGACCTCCTCCAGCGAAAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................CAACGACGCAGATGATGGTACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
CGAACTGATTTCGGTGCTGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........TCGGTGCTGACCAACGACGCAGATGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................ACGACGCAGATGATGGTACAGATACGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCATTACGTTGGACCTCCTCCA.......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAGTCCATTACGTTGGACCTCCTC.........	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCCCCACCATGTCCAAGTCCA..........................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTTGGACCTCCTCCA.......	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........TCGGTGCTGACCAACGACGCAGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........TCGGTGCTGACCAACGACGCAGATGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAGTCCATTACGTTGGACCTCCT..........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................CAGATGATGGTACAGATACGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
................................ATGATGGTACAGATACGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....CTGATTTCGGTGCTGACCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCATTACGTTGGACCTCCTCCAGCGA...	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGAACTGATTTCGGTGCTGACCAACGACGCAGATGATGGTACAGATACGGGTAGGATTT---------------------------GC-------------------------ACTCGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGTCTCGGAAGTAGTA-----------------TAGTA--------------------------------------ACAG------------------------------TATGTATG-----TATCTTC--CCCCCGTAGAAACCCCCACCATGTCCAAGTCCATTACGTTGGACCTCCTCCAGCGAAAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...ACTGATTTCGGTGCTGACCAACGACGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	3	0	0	0	0	0
......................AACGACGCAGATGATGGTACAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
CGAACTGATTTCGGTGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.GAACTGATTTCGGTGCTGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................GACGCAGATGATGGTACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............GCTGACCAACGACGCAGATGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droWil2

TGAACTTATTTCGGTGCTAACAGATGATGCGGATGATGGAACAGATGCGGGTAAGCTAA---------------------------CTAGAAATTTGGT-------G---------------------TATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAAAAT-GGGTA------------------------------------------------------------------------------------------AA-ACTAA-------TA-----TATTTTGCTTTGATTCAGACACTCCCACCATGTCCAAATCGGTAACATTGGATCTGCTGCAAAAGAAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................GATGATGCGGATGATGGAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	1	0	1	1	1
...............................GATGATGGAACAGATGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	2	1	0	0
................................ATGATGGAACAGATGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	1	1	0	1
..............................GGATGATGGAACAGATGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	2	1	0
...............GCTAACAGATGATGCGGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0
.....................AGATGATGCGGATGATGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0
..............................GGATGATGGAACAGATGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	1
.....................AGATGATGCGGATGATGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0
.............................CGGATGATGGAACAGATGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	1
..................AACAGATGATGCGGATGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	1	1
...............GCTAACAGATGATGCGGATGATGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	1	0
.................................TGATGGAACAGATGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
..................AACAGATGATGCGGATGATGGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
.......................ATGATGCGGATGATGGAACAGATGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
...................ACAGATGATGCGGATGATGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTCCCACCATGTCCAAATCG...........................	23	1	1.00	1	0	1	0	0	0
...............GCTAACAGATGATGCGGATGATGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
..................AACAGATGATGCGGATGATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
........................TGATGCGGATGATGGAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
...................ACAGATGATGCGGATGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.................................TGATGGAACAGATGCGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATTGGATCTGCTGCAAAAGAA.	24	1	1.00	1	0	0	1	0	0
.....................AGATGATGCGGATGATGGAACAGATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.....................AGATGATGCGGATGATGGAACAGATGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
...............................GATGATGGAACAGATGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCGGTAACATTGGATCTGC...........	23	1	1.00	1	0	1	0	0	0
......................GATGATGCGGATGATGGAACAGATGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACATTGGATCTGCTGCAAAAGA..	26	1	1.00	1	0	0	1	0	0
....CTTATTTCGGTGCTAACAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTCCCACCATGTCCAAA..............................	20	1	1.00	1	0	0	0	1	0
......TATTTCGGTGCTAACAGATGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
..................AACAGATGATGCGGATGATGGAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
...............GCTAACAGATGATGCGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
...................ACAGATGATGCGGATGATGGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCGGTAACATTGGATCTGCT..........	24	1	1.00	1	1	0	0	0	0
.GAACTTATTTCGGTGCTAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGGTAACATTGGATCTG............	21	1	1.00	1	0	1	0	0	0
......................GATGATGCGGATGATGGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAATCGGTAACATTGGATCTG............	25	1	1.00	1	0	1	0	0	0

droVir3

TGAACTGATTTCGGTGCTAACAAACGACGCGGACGATGGAACCGATGCGGGCAAGTTGC---------------------------TTA-------------------------GTTGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTGATAAGGCATA-TA-----------------AATTA--------------------------------------ATAG------------------------------TGAACTAT-----TTTGGGC--AACCTATAGACACGCCTACCATGTCCAAATCAATAACCCTGGACCTGCTGCAGAAGAAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAACCCTGGACCTGCTGCAGAAGA..	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CGATGGAACCGATGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	1.33	4	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GGTGCTAACAAACGACGCGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCTGGACCTGCTGCAGAA....	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAACCCTGGACCTGCTGCAGAAGAAG	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGGACCTGCTGCAGA.....	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AACGACGCGGACGATGGAACCGATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAACCCTGGACCTGCTGC........	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AACAAACGACGCGGACGATGGAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ACGCGGACGATGGAACCGATGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CGCGGACGATGGAACCGATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AACGACGCGGACGATGGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AACGACGCGGACGATGGAACCGATGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCAATAACCCTGGACCTGC...........	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCGGACGATGGAACCGATGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TAACAAACGACGCGGACGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAACCCTGGACCTGCTGCAG......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCAAGTTGC---------------------------TTA-------------------------GTTGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTG............................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCCTGGACCTGCTGCAGAAGA..	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TAACAAACGACGCGGACGATGGAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAACCCTGGACCTGCTGCA.......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCCTACCATGTCCAAAT.............................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GCTAACAAACGACGCGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGAACTGATTTCGGTGCTAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCAAGTTGC---------------------------TTA-------------------------GTTGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTGA...........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AACGACGCGGACGATGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGAACTAATTTCGGTGCTCACCAACGATGCAGACGATGCAACTGATGCGGGTAAGTTGA---------------------------ATAAAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAAT-AGGCAAG-TA-----------------G--TA--------------------------------------ATAA------------------------------TGAAC----------TCATC--CACCTTTAGATACGCCTACCATGTCAAAGTCGATCACTCTGGACCTGCTGCAGAAGAAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCACTCTGGACCTGCTGC........	21	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCATGTCAAAGTCGAT.........................	19	1	1.00	1	1	0	0	0	0	0
............GGTGCTCACCAACGATGCAGACGATGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.GAACTAATTTCGGTGCTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....................CCAACGATGCAGACGATGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........TCGGTGCTCACCAACGATGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCATGTCAAAGTCGATCACTCTG..................	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGTCGATCACTCTGGACCTG............	25	1	1.00	1	1	0	0	0	0	0
..................CACCAACGATGCAGACGATGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
............................GCAGACGATGCAACTGATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTGGACCTGCTGCAGA.....	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCATGTCAAAGTCGATCACTCTG..................	25	1	1.00	1	1	0	0	0	0	0
......AATTTCGGTGCTCACCAACGATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTGGACCTGCTGCAGAAGAA.	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCACTCTGGACCTGCTG.........	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCAAAGTCGATCACTC....................	20	1	1.00	1	1	0	0	0	0	0
................CTCACCAACGATGCAGACGATGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0

droGri2

TGAACTGATTTCGGTGCTAACCAACGATGCAGACGATGGCACCGATGGGGGTAAGTCAG---------------------------CA----------T-------CAGCTACACTCGGAA---AAAAATCAGCTAAAT------------------------------TTGTGTAAATCGCCTTACAAAATGGAAAATTGTTCTTGATTTTAGAAACAATTAATAAATATTAAG--------AATAGTTTTTAGGCTTTAGAAATAATTTAACGATTTACTAAAATTTAGTACGATTTTTAAACTATATTAACGAACT--------------------------------------AT-AAGCGAA-TA-----------------A--TA--------------------------------------ATGATCAACTTCT--------CGTA--------------------------------ACAATTAGATACGCCAACGATGTCCAAGTCGATAACGCTGGATCTGCTGCAGAAGAAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_17420

2l:6812356-6812469 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads