ID:

dsi_17395

 Coordinate:

x:87002-87151 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.9 -9.7 -9.5

Flybase annnotation

three_prime_UTR [x_86932_87001_+]; exon [x_86492_87001_+]; exon [x_86492_87001_+]; five_prime_UTR [x_86492_87001_+]; intron [x_87002_87313_+]; intron [x_87002_87313_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTAGGAGCACTGTTGATCAGCTTATACCTCTGTTTGTGTACTTTTTTATGGTAAATAAATAAACTGTATAGTAACATACAAACAAACCACATTTACAATATATATACATTTTTGGCAGATGGTACTAAGCATGTTCTACCTTGTTTCTAAATTGTGGATTGATTTTGTATATACTTTGAAAATAAAGTTAAAAACTTGACATGACGTGCCCATTGTAGGGTTAATGTTTCTGCTACTGCTAATCAGTGTT
********************************************************************..................(((((((((.((((.....((((.(((((.........))))).)))).......))))..)))).))))).******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
............................................................................................................................................................................ACTTTGAAAAGAGAGTTAAAGA........................................................ 22 3 1 3.00 3 1 1 0 0 1 0 0 0
............................................................................................................................................................................ACTTTGAAAAGAGAGTGAAAAA........................................................ 22 3 7 1.14 8 4 0 1 0 3 0 0 0
...................................................................................................................................TGTTCTACCTTGTTTCTAAATTGTGGA............................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................TTTCTAAATTGTGGATTGATTTTGTA................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................TAGTAACATACAAACAAACCAC................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................TGACATGACGTGCCCATTGTAGGGT............................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................AATAAATAAACTGTATAGTAAC............................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0
..................................................GTAAATAAATAAACTGTATAGTAACATA............................................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................ACTTTGAAGAGAGAGTTAAAA......................................................... 21 3 5 0.60 3 0 3 0 0 0 0 0 0
............................................................................................................................................................................ACTTTGAAGAGAGAGTTAAA.......................................................... 20 3 16 0.44 7 0 7 0 0 0 0 0 0
.............................................................................................................................................................................CTTTGAAGAGAGAGTTAAAA......................................................... 20 3 16 0.38 6 0 6 0 0 0 0 0 0
.TAGGAGTACTGTTGACCA....................................................................................................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0
.............................................................................................................TTCTGGCAGATGGTACCA........................................................................................................................... 18 2 7 0.14 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................................CTTTGAAAAGAGAGTTAAAGA........................................................ 21 3 14 0.14 2 1 1 0 0 0 0 0 0
..............................................................................................................................................................................TTTGAAGATAGAGTTAAAA......................................................... 19 2 7 0.14 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................TGGATTGATTTGTTATACACT........................................................................... 21 3 8 0.13 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................ACTTTGAAAAGAGAGTGAAAA......................................................... 21 3 18 0.11 2 0 0 1 0 0 0 1 0
...........................................................................................................................................................................GACTTTGAAAAGAGAGTTAAA.......................................................... 21 3 11 0.09 1 0 0 0 0 1 0 0 0
..............................................................................................................................................................................TTTGAAAATAGAGTGAAAAA........................................................ 20 2 11 0.09 1 0 0 0 0 0 0 0 1
.............................................................................................................................................................................CTTTGGAAAGAGAGTTAAAAA........................................................ 21 3 12 0.08 1 0 0 0 0 1 0 0 0
.........CTGGTGATCGGCTTCTACC.............................................................................................................................................................................................................................. 19 3 14 0.07 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................ATGGCGTGCCCTTTGTA................................. 17 2 14 0.07 1 0 1 0 0 0 0 0 0
............................................................................................................................CTAAGCATGTAGTACC.............................................................................................................. 16 2 17 0.06 1 0 0 0 0 0 0 1 0
...........................................................................................................................................................................AACTTTGAAAAGAGAGTTAAA.......................................................... 21 3 17 0.06 1 0 1 0 0 0 0 0 0
.................................TTGTGAACGTTTTTATCGTA..................................................................................................................................................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 1 0
..........................................................ATTAACTGTATCGTAAGAT............................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0
....................................TGTACCTTTTTATGG....................................................................................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................GAAAAGAAAGTTAAAAA........................................................ 17 1 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

GATCCTCGTGACAACTAGTCGAATATGGAGACAAACACATGAAAAAATACCATTTATTTATTTGACATATCATTGTATGTTTGTTTGGTGTAAATGTTATATATATGTAAAAACCGTCTACCATGATTCGTACAAGATGGAACAAAGATTTAACACCTAACTAAAACATATATGAAACTTTTATTTCAATTTTTGAACTGTACTGCACGGGTAACATCCCAATTACAAAGACGATGACGATTAGTCACAA
********************************************************************************************..................(((((((((.((((.....((((.(((((.........))))).)))).......))))..)))).))))).******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
....................................................................ATCATTGTATGTTTGTTTGG.................................................................................................................................................................. 20 0 1 1.00 1 0 1 0
.............ACTAGTCGAATATGG.............................................................................................................................................................................................................................. 15 0 1 1.00 1 1 0 0
.......................................................................................................................ACCATGGTTCGTACA.................................................................................................................... 15 1 3 0.33 1 0 0 1
.....................................................TTATTTTTTTGACATGTCATTGTTT............................................................................................................................................................................ 25 3 4 0.25 1 1 0 0
.....................................................TTATATTTTTGACATGTCATTGT.............................................................................................................................................................................. 23 3 7 0.14 1 0 1 0
................................................................................................................ACCGTCTACTATCATTC......................................................................................................................... 17 2 11 0.09 1 0 1 0
............................................................................AAGTTTATTTGGTGTACATGT......................................................................................................................................................... 21 3 11 0.09 1 1 0 0
.....................................................TTATTTATATGTCATATC................................................................................................................................................................................... 18 2 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:86952-87201 + dsi_17395 CTA-GG---AGCA-CT---GTTGATCAGC----TTATAC-----CTC-----TGTTTGTGTACTTTTTTATGG-----TAAATAAATAAACTG-TAT--------AGTAA-----CA----TACAAA--CAAA-------------------------------------------------------------------------------------CCACATTTAC----AATATAT----------ATACATTTTTGGCAGA---TGGTACTAAGCATGTTCT----------ACCTTGTTT-CTAA------ATTGTGGATTGATTTTGTATATACTTTGAAAATAA---------------------------AGTTAAAAACT------------------------------------------------------------------------------------------------T---------GACAT-------------------------------GACGTGCCCATTGTAGGGTTAATGTTTCTGCTACTGCTAATCA---GTGTT
droSec2 scaffold_10:21096-21344 + CTA-GG---AGTA-CT---GTTGATCAGC----TTATAC-----CTC-----TGTTTGTGTACTTTTTTATGG-----TACATAAATAAACTG-TAT--------AGTAA-----CA----TACAAA--CAAA-------------------------------------------------------------------------------------CCACATTTAC----AATATAT----------ATACATTTTTGGCAGA---TGGTACTAAGCATGTTCT----------ATCTTGTTT-CTAA------ATTGTGGATTGATTTTGTATATACTTTGAAAATAA---------------------------AGCTAAAAGCT------------------------------------------------------------------------------------------------T---------GACAT-------------------------------GACGTGCCCATTGTAGGGTTAATGTTTCTGCTACTG-TAATCA---GTGTT
dm3 chrX:149401-149690 + CTA-GG---AGTA-CT---GTTGACCAGT----TTATAC-----CCG-----TGTTTGTGTACTTT-TTATGG-----TAAATAAATAAACTA-TAT--------AA----------TAACTACAAA--GAAA-------------------------------------------------------------------------------------CCACATTTAC----AATATATGTATGTACATATGCATTAATGGCAGA---TGGTACTAAGCATGTCCT----------AACTTGTCTTCTAA------ATTGTGGATTGATTTCGTATATACTTTGAAAATAA---------------------------AGCTAAAAAGT----AGTGG---CTTA-----------TTA--ATTTATATTTA--------------------------------------TTTATTT------CTC---------GACAT-------------------------------GACATGCCCATTGTGGGGTTAATATTTCTGTTTCTG-TAATCA---GTGTT
droEre2 scaffold_4644:90660-90898 + CTG-GA---AGTA-CT---GTTGGCCACC----TAACAC-----CCG-----TATTTGTCTACCGTTTTATAG-----TAATTAAATAAACTA-TGT--------AATTA-----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-TCCAATGCTAAGTGTGGATTGATTTTATGTATACTTTGAAAATAGGGTGCAACTAGATTTT---------AAAGATAAAAACT----AGTGT---TTTA-----------TTG--TTTTATATGTA--------------------------------------CATATTTATT---ATT---------GACAT-------------------------------GACATGCCCATTGTTGGGTTAATGCTTCTGCTCCCG-TATTCA---GTGTT
droYak3 X:89532-89827 + CTG-GG---AGTA-CT---GTTGGCCTCC----TAATAT-----CCG-----TATTTGTATACTGTTTTATAG-----TAAATAAATAAACTA-TCTAATAACATAGATA-----TATGACTACGAA--CAAAA--------------------------------------------------------------------------------------ACATTCTC----AATATATACATAT----ATATATTTTTGGAAGA---TGACACTAAGCATGTCCC----------AAAATATCC-ATTA------AT--TGGATTGATTTTATCTACACTTTGGAAATAAGGTGCAATTAGATTTT---------AA-------AG-----------------------------CTG--TCTTATATGTA--------------------------------------TTTATTT------ATT---------GACAT-------------------------------GACATGCCCATTGTAGGGTTAATGCTTCTGCTCCCG-TAATCA---GTGTT
droEug1 scf7180000409277:455888-456203 + GCA-GG---AGCACCCGGAGGTATTCAGT----CATCAT-----CGG-----TGTTTTTGTACTGTTGTAGGGTAGTGTAAATAAAAAACCCA-TCT--------AGCTA-----TATGACTACAAA--TGGAGATCTCTTT-AATTCGGATT-TACACGAGGTACGGAAAACT--ACATTTATATTTTC-CTCAATGACTTAAAG------------TATCCCACTTTATTAATTTATA------------------------TGTAT---------------------------------------------------------------ATATAAGCTTTAAAAGGA-----------------------------------------ACTTTTAGAGCCAATTATTTTAAAAACGATACATATATTTA--------------------------------------TTTATTT--T---ATA---------AACAT-------------------------------TTTTTGCCCTTGATAGGGTTAAAGCTCCAGCCATCG-AAATCA---GTGTT
droBia1 scf7180000301760:1091682-1091999 + CCA-GG---AGCAGCC---GGTGGCCAGC----AGTCAT-----GCG-----TGTTTTTGTACTGTTGTAGGGTAGTGTAAATAAATAACCCA-TCT--------AGCTT-----TATGACTACAAG--TGGATGTGCTCTTAAATTAGG-TTTTTA-------AGGGAAAACT--ACATAAGTGAACCCTATGAATGACCAGAATTCCCTATGAGATCCATAGCTAG----TGCATAA----------ATACAT-------AGTGTGT---------------------------------------------------------------AT-TATACCTTAAATTGGA---------------------------AGTGAGAAACTTAATATTTATAT----------------------------TTATTTTTCATATTA-----------------------------------T---ATG---------TGCAA--------------------------TTATTGACATGCCCATCGTAGGGTTAAAGCTTCAGCCGGCG-AAACCA---GTGTT
droTak1 scf7180000415179:79095-79213 + T---------------------------------------------------------TGTACTGTTGTAGGGTAGTGTAAATAAATAACCCA-TCT--------AGGTG-----TATGACAACAAAAATGTATGTTCCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT--------------------------TTTTTGACATGCCCGCTGAAGGGTTAAAGCTTCTG--------AGCCA---GTGTT
droEle1 scf7180000491011:1130605-1130845 + CTA-GG---AGCATCC---GGTGGTCTCC--GCAGTCAT-----CCG-----TGTTTTTGTACTGTTGTAGGGTAGTGTAAATAAATAACCCA-TCT--------AGCTA-----TATGACTACAAA--TGGAGATCCCTTTTAATTTGA-TTTTTA------------------------------------------------------------------------------------------------------------------TATAAACTATTTTTCAAGATGTTTTGTTTAAGTT-CAAA------AAAATATATTTA----------------------------------------------------------------------TTT----------------------------GTATATTTTA-------------------------------TT-------------------------TAA--------------------------ATATCTACATGGCCATTGTGGGGTTAAAGTTTCAGCCGGCA-ACACCA---ATGTT
droRho1 scf7180000779506:915021-915288 + CCG-AG---AGCATCC---GGTGGCCTCC--GCAGTCAT-----CCG-----TGTTTTTGTACTGTTGTAGGGTAGTGTAAATAAATAACCCA-TCT--------AGCTA-----TATGACTACAAA--TGGATATTGCTTTCGTTTAGA-TTTTTG-------TTCG------------------------------ACTACAAA------------TGTCCCATCC----AATGTAA----------ATACAT-------AGA---TAATATAAACTATGTTCC----------AA----------------------------------------GCTTTAAACAAA-----------------------------------------ATATTTAAAT----------------------------TCATACATCA-------------------------------CA-------------------------CAT--------------------------TTATTGACATGCCCATTGTAGGGTTAAAGCTTTAACCGGCG-AAATCA---GTGTG
droFic1 scf7180000453927:565474-565760 + GCCTGGAAAAGCATCC---TCTGGCTAGC----AAGCAT-----CCG-----TGGTTTTGTACTGTTGTAGGGTAGTGTAAATAAATAACCCA-TCT--------AGCTA-----TATGACTACAAA--TGCAGTCTCTTTTTGTTAAAG-GTTT---------GCCGAAAACTTTACTTTTGTGAA------------------------------------------------------------------------------------------------------------------AGTA------------------------------------------------------------TT---------AAAGTGAGA---GGAATAGTTATTT---A-----------T--------------AT---------------------------TTGCACTGTGCACATTTATATTAA---CC-TTGTTC--CGGACCCAATAATGTAGTTGTATATTAAAAATTAGCAGGCCCAATGAAGGGTTAAAGCTTT-ACCGGCG-AATTCA---GTGTG
droKik1 scf7180000302544:902501-902604 - GG---G---AGT---T---GCTGGCCTA-----------ACTTGTTG-----TTTTTTTTACTGTTCGAAGTGTAGTGTAAATAAATAAACC--TAT--------AGCTA-----TATGACTACAAA--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTAA-------GCC----------ATTTGCGAT
dp5 XL_group1a:459832-460055 - GGG-TC---ATTT-TT--AGTCGATCGGTTG--------TTACGCTA-----TTTTTTTTTATCGTTATAGTGTAGTATATATTAACGA---------------------AAAAAAA----TACAAA--CTAT-------------------------------------------------------------------------------------TTACATATAT----GGTC----------------CACACATGGGAGA---TGGCTC---------------------------------------------------------------------------------------AAGTATTTATATATCTA-----AGTAGT-----------------------------------------------------------------------TTTGGCTGTGCATATTAGTATTCT---GCGACTTTA--AG-------------------------------GAAACATTCATTATATCTTAAATTAAACGGCAGCGG-CAGTGT---GTGCA
droPer2 scaffold_26:186997-187216 + GGG-TC---ATTT-TT--AGTCGATCGGTTG--------TTACGCTA-----TTTTTTTTTATCGTTATAGTGTAGTATATATTAACGA---------------------AAAAAAA----TACAAA--CTAT-------------------------------------------------------------------------------------TTACATATAT----GGTC----------------TACACATGGGAGA---TGGCTC---------------------------------------------------------------------------------------AAGTATTTATATATCTA-----AGTAGT-----------------------------------------------------------------------TTTGGCTGTGCATATTAGTATTCT---GCGACTTTA--AG-------------------------------GAAACATTCATTATATATTAAATTAA----ACGGCA-GCGGCA---GTGTG
droVir3 scaffold_12928:6289136-6289332 - AAT------------T---GTTGCGCTAT----ATATAA-----TTATTTTTTTTTTTTGTTTTGTTGTAGTGTAGTGTAAATAAAACATAAACATT--------AGCAT-----TATGATTACGCT--CACT---------------------AATAATAGTTACGGC--------------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------------GAATAT----------------------TATTATAAATAT----------------------------TTAATATTAATATTACGTTAAAAATCCGAGT-----------------GAA---ACTTGCAATTTTG---------------------------------------------------------------AAATGGCA-AAAACAAGTGTGTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTA-GG---AGCA-CT---GTTGATCAGC----TTATAC-----CTC-----TGTTTGTGTACTTTTTTATGG-----TAAATAAATAAACTG-TAT--------AGTAA-----CA----TACAAA--CAAA-------------------------------------------------------------------------------------CCACATTTAC----AATATAT----------ATACATTTTTGGCAGA---TGGTACTAAGCATGTTCT----------ACCTTGTTT-CTAA------ATTGTGGATTGATTTTGTATATACTTTGAAAATAA---------------------------AGTTAAAAACT------------------------------------------------------------------------------------------------T---------GACAT-------------------------------GACGTGCCCATTGTAGGGTTAATGTTTCTGCTACTGCTAATCA---GTGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................TGTTCT----------ACCTTGTTT-CTAA------ATTGTGGA..................................................................................................................................................................................................................................................................2711.00100000000100000000
..............................................................................................................................................................................................................................................................................................................TTT-CTAA------ATTGTGGATTGATTTTGTA.......................................................................................................................................................................................................................................................2611.00100000010000000000
................................................................................................T--------AGTAA-----CA----TACAAA--CAAA-------------------------------------------------------------------------------------CCAC........................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GACAT-------------------------------GACGTGCCCATTGTAGGGT................................2511.00100000010000000000
................................................................................AATAAATAAACTG-TAT--------AGTAA-----C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
........................................................................G-----TAAATAAATAAACTG-TAT--------AGTAA-----CA----TA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
droSec2
CTA-GG---AGTA-CT---GTTGATCAGC----TTATAC-----CTC-----TGTTTGTGTACTTTTTTATGG-----TACATAAATAAACTG-TAT--------AGTAA-----CA----TACAAA--CAAA-------------------------------------------------------------------------------------CCACATTTAC----AATATAT----------ATACATTTTTGGCAGA---TGGTACTAAGCATGTTCT----------ATCTTGTTT-CTAA------ATTGTGGATTGATTTTGTATATACTTTGAAAATAA---------------------------AGCTAAAAGCT------------------------------------------------------------------------------------------------T---------GACAT-------------------------------GACGTGCCCATTGTAGGGTTAATGTTTCTGCTACTG-TAATCA---GTGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................ATCAGC----TTATAC-----CTC-----TGTTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..........................AGC----TTATAC-----CTC-----TGTTTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
....GG---AGTA-CT---GTTGATCAGC----T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
..........................AGC----TTATAC-----CTC-----TGTTTGTGTACTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
dm3
CTA-GG---AGTA-CT---GTTGACCAGT----TTATAC-----CCG-----TGTTTGTGTACTTT-TTATGG-----TAAATAAATAAACTA-TAT--------AA----------TAACTACAAA--GAAA-------------------------------------------------------------------------------------CCACATTTAC----AATATATGTATGTACATATGCATTAATGGCAGA---TGGTACTAAGCATGTCCT----------AACTTGTCTTCTAA------ATTGTGGATTGATTTCGTATATACTTTGAAAATAA---------------------------AGCTAAAAAGT----AGTGG---CTTA-----------TTA--ATTTATATTTA--------------------------------------TTTATTT------CTC---------GACAT-------------------------------GACATGCCCATTGTGGGGTTAATATTTCTGTTTCTG-TAATCA---GTGTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................C-----CCG-----TGTTTGTGTACTTT-TTATGG-----T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TGTTTGTGTACTTT-TTATGG-----TAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ACCAGT----TTATAC-----CCG-----TGTTTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGTA-CT---GTTGACCAGT----TTATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TCCT----------AACTTGTCTTCTAA------ATTGTGGATTGA..............................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT------CTC---------GACAT-------------------------------GACATG.............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TAA------ATTGTGGATTGATTTCGT........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TTGACCAGT----TTATAC-----CCG-----TGTTTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TACTTT-TTATGG-----TAAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CATATGCATTAATGGCAGA---TG........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TATGG-----TAAATAAATAAACTA-TAT--------AA----------TAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................CTA-TAT--------AA----------TAACTACAAA--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................CATTAATGGCAGA---TGGTACT...................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................TTATGG-----TAAATAAATAAACTA-TA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................ATAC-----CCG-----TGTTTGTGTACTTT-TTATGG-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................ATGGCAGA---TGGTACTAAGCA..............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------------------------GACATGCCCATTGTGGGGT................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
............................................CCG-----TGTTTGTGTACTTT-TTATGG-----T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------CTC---------GACAT-------------------------------GACATGCCCATTGTG....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TAAACTA-TAT--------AA----------TAACTACAAA--GAAA-------------------------------------------------------------------------------------CCAC........................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTA-GG---AGTA-CT---GTTGACCAGT----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.....................................................................................................................................................................................................................................................................................................................A------ATTGTGGATTGATTTCGTAT......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................ACCAGT----TTATAC-----CCG-----TGTTTGTGTACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TA--------------------------------------TTTATTT------CTC---------GACAT-------------------------------GAC................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................T--------AA----------TAACTACAAA--GAAA-------------------------------------------------------------------------------------CCACATT.....................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCCCATTGTGGGGTTAA.............................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..A-GG---AGTA-CT---GTTGACCAGT----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................ATAA---------------------------AGCTAAAAAGT----AGTGG---C....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................T--------AA----------TAACTACAAA--GAAA-------------------------------------------------------------------------------------CCACATTTAC----AA............................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TGTTTGTGTACTTT-TTATGG-----TAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GT----TTATAC-----CCG-----TGTTTGTGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TCCT----------AACTTGTCTTCTAA------ATTGTG....................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TTA-----------TTA--ATTTATATTTA--------------------------------------TTT.............................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TTGTGTACTTT-TTATGG-----TAAATAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................CG-----TGTTTGTGTACTTT-TTATGG-----TAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................................................GTTTGTGTACTTT-TTATGG-----TA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................C-----CCG-----TGTTTGTGTACTTT-TT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ACCAGT----TTATAC-----CCG-----TGTTTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TACTTTGAAAATAA---------------------------AGCTAAA.....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................G-----TGTTTGTGTACTTT-TTATGG-----TA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................ACCAGT----TTATAC-----CCG-----TGTTTGTGTACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................A-----------TTA--ATTTATATTTA--------------------------------------TTT.............................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTG-GA---AGTA-CT---GTTGGCCACC----TAACAC-----CCG-----TATTTGTCTACCGTTTTATAG-----TAATTAAATAAACTA-TGT--------AATTA-----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-TCCAATGCTAAGTGTGGATTGATTTTATGTATACTTTGAAAATAGGGTGCAACTAGATTTT---------AAAGATAAAAACT----AGTGT---TTTA-----------TTG--TTTTATATGTA--------------------------------------CATATTTATT---ATT---------GACAT-------------------------------GACATGCCCATTGTTGGGTTAATGCTTCTGCTCCCG-TATTCA---GTGTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
CTG-GA---AGTA-CT---GTTGGCCACC----TAACAC-----CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
.....................................................ATTTGTCTACCGTTTTATAG-----TAATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
..........................................................................................CTA-TGT--------AATTA-----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-TCCAAAAA............................................................................................................................................................................................................................................................................2220.5011000000
droYak3
CTG-GG---AGTA-CT---GTTGGCCTCC----TAATAT-----CCG-----TATTTGTATACTGTTTTATAG-----TAAATAAATAAACTA-TCTAATAACATAGATA-----TATGACTACGAA--CAAAA--------------------------------------------------------------------------------------ACATTCTC----AATATATACATAT----ATATATTTTTGGAAGA---TGACACTAAGCATGTCCC----------AAAATATCC-ATTA------AT--TGGATTGATTTTATCTACACTTTGGAAATAAGGTGCAATTAGATTTT---------AA-------AG-----------------------------CTG--TCTTATATGTA--------------------------------------TTTATTT------ATT---------GACAT-------------------------------GACATGCCCATTGTAGGGTTAATGCTTCTGCTCCCG-TAATCA---GTGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........AGTA-CT---GTTGGCCTCC----TAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.....................................................................................ATAAACTA-TCTAATAACATAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.....................................................................................................ACATAGATA-----TATGACTACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
droEug1
GCA-GG---AGCACCCGGAGGTATTCAGT----CATCAT-----CGG-----TGTTTTTGTACTGTTGTAGGGTAGTGTAAATAAAAAACCCA-TCT--------AGCTA-----TATGACTACAAA--TGGAGATCTCTTT-AATTCGGATT-TACACGAGGTACGGAAAACT--ACATTTATATTTTC-CTCAATGACTTAAAG------------TATCCCACTTTATTAATTTATA------------------------TGTAT---------------------------------------------------------------ATATAAGCTTTAAAAGGA-----------------------------------------ACTTTTAGAGCCAATTATTTTAAAAACGATACATATATTTA--------------------------------------TTTATTT--T---ATA---------AACAT-------------------------------TTTTTGCCCTTGATAGGGTTAAAGCTCCAGCCATCG-AAATCA---GTGTTSizeHit CountTotal NormTotal
No Reads
droBia1
CCA-GG---AGCAGCC---GGTGGCCAGC----AGTCAT-----GCG-----TGTTTTTGTACTGTTGTAGGGTAGTGTAAATAAATAACCCA-TCT--------AGCTT-----TATGACTACAAG--TGGATGTGCTCTTAAATTAGG-TTTTTA-------AGGGAAAACT--ACATAAGTGAACCCTATGAATGACCAGAATTCCCTATGAGATCCATAGCTAG----TGCATAA----------ATACAT-------AGTGTGT---------------------------------------------------------------AT-TATACCTTAAATTGGA---------------------------AGTGAGAAACTTAATATTTATAT----------------------------TTATTTTTCATATTA-----------------------------------T---ATG---------TGCAA--------------------------TTATTGACATGCCCATCGTAGGGTTAAAGCTTCAGCCGGCG-AAACCA---GTGTTSizeHit CountTotal NormTotal
No Reads
droTak1
T---------------------------------------------------------TGTACTGTTGTAGGGTAGTGTAAATAAATAACCCA-TCT--------AGGTG-----TATGACAACAAAAATGTATGTTCCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT--------------------------TTTTTGACATGCCCGCTGAAGGGTTAAAGCTTCTG--------AGCCA---GTGTTSizeHit CountTotal NormTotal
No Reads
droEle1
CTA-GG---AGCATCC---GGTGGTCTCC--GCAGTCAT-----CCG-----TGTTTTTGTACTGTTGTAGGGTAGTGTAAATAAATAACCCA-TCT--------AGCTA-----TATGACTACAAA--TGGAGATCCCTTTTAATTTGA-TTTTTA------------------------------------------------------------------------------------------------------------------TATAAACTATTTTTCAAGATGTTTTGTTTAAGTT-CAAA------AAAATATATTTA----------------------------------------------------------------------TTT----------------------------GTATATTTTA-------------------------------TT-------------------------TAA--------------------------ATATCTACATGGCCATTGTGGGGTTAAAGTTTCAGCCGGCA-ACACCA---ATGTTSizeHit CountTotal NormTotal
No Reads
droRho1
CCG-AG---AGCATCC---GGTGGCCTCC--GCAGTCAT-----CCG-----TGTTTTTGTACTGTTGTAGGGTAGTGTAAATAAATAACCCA-TCT--------AGCTA-----TATGACTACAAA--TGGATATTGCTTTCGTTTAGA-TTTTTG-------TTCG------------------------------ACTACAAA------------TGTCCCATCC----AATGTAA----------ATACAT-------AGA---TAATATAAACTATGTTCC----------AA----------------------------------------GCTTTAAACAAA-----------------------------------------ATATTTAAAT----------------------------TCATACATCA-------------------------------CA-------------------------CAT--------------------------TTATTGACATGCCCATTGTAGGGTTAAAGCTTTAACCGGCG-AAATCA---GTGTGSizeHit CountTotal NormTotal
No Reads
droFic1
GCCTGGAAAAGCATCC---TCTGGCTAGC----AAGCAT-----CCG-----TGGTTTTGTACTGTTGTAGGGTAGTGTAAATAAATAACCCA-TCT--------AGCTA-----TATGACTACAAA--TGCAGTCTCTTTTTGTTAAAG-GTTT---------GCCGAAAACTTTACTTTTGTGAA------------------------------------------------------------------------------------------------------------------AGTA------------------------------------------------------------TT---------AAAGTGAGA---GGAATAGTTATTT---A-----------T--------------AT---------------------------TTGCACTGTGCACATTTATATTAA---CC-TTGTTC--CGGACCCAATAATGTAGTTGTATATTAAAAATTAGCAGGCCCAATGAAGGGTTAAAGCTTT-ACCGGCG-AATTCA---GTGTGSizeHit CountTotal NormTotal
No Reads
droKik1
GG---G---AGT---T---GCTGGCCTA-----------ACTTGTTG-----TTTTTTTTACTGTTCGAAGTGTAGTGTAAATAAATAAACC--TAT--------AGCTA-----TATGACTACAAA--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTAA-------GCC----------ATTTGCGATSizeHit CountTotal NormTotal
No Reads
dp5
GGG-TC---ATTT-TT--AGTCGATCGGTTG--------TTACGCTA-----TTTTTTTTTATCGTTATAGTGTAGTATATATTAACGA---------------------AAAAAAA----TACAAA--CTAT-------------------------------------------------------------------------------------TTACATATAT----GGTC----------------CACACATGGGAGA---TGGCTC---------------------------------------------------------------------------------------AAGTATTTATATATCTA-----AGTAGT-----------------------------------------------------------------------TTTGGCTGTGCATATTAGTATTCT---GCGACTTTA--AG-------------------------------GAAACATTCATTATATCTTAAATTAAACGGCAGCGG-CAGTGT---GTGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGTATTCT---GCGACTTTA--AG-------------------------------GA.................................................2513.0030000000300
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTATATCTTAAATTAAACGGCAGCGG-C.............2911.0010010000000
.....C---ATTT-TT--AGTCGATCGGTTG--------TTACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000100
................................................................................................................................................................................................................................ATAT----GGTC----------------CACACATGGGAGA---..........................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........ATTT-TT--AGTCGATCGGTTG--------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
....................................................................................................................A----TACAAA--CTAT-------------------------------------------------------------------------------------TTACATATAT----GGTC----------------..........................................................................................................................................................................................................................................................................................................................................2511.0010010000000
...................................................................................................................................................................................................................................T----GGTC----------------CACACATGGGAGA---TGG.......................................................................................................................................................................................................................................................................................................................2111.0010000001000
............T-TT--AGTCGATCGGTTG--------TTACGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000001
......................................................................................................................................................................................................................................................................................................................................................................................TCTA-----AGTAGT-----------------------------------------------------------------------TTTGGCTGTGC...............................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................ATATCTA-----AGTAGT-----------------------------------------------------------------------TTTGGCTG..................................................................................................................2111.0010100000000
....TC---ATTT-TT--AGTCGATCGGTTG--------TTACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.....................................................................AGTGTAGTATATATTAACGA---------------------AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..........TTT-TT--AGTCGATCGGTTG--------TTACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000000
droPer2
GGG-TC---ATTT-TT--AGTCGATCGGTTG--------TTACGCTA-----TTTTTTTTTATCGTTATAGTGTAGTATATATTAACGA---------------------AAAAAAA----TACAAA--CTAT-------------------------------------------------------------------------------------TTACATATAT----GGTC----------------TACACATGGGAGA---TGGCTC---------------------------------------------------------------------------------------AAGTATTTATATATCTA-----AGTAGT-----------------------------------------------------------------------TTTGGCTGTGCATATTAGTATTCT---GCGACTTTA--AG-------------------------------GAAACATTCATTATATATTAAATTAA----ACGGCA-GCGGCA---GTGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................TTTATCGTTATAGTGTAGTATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003000003
.....C---ATTT-TT--AGTCGATCGGTTG--------TTACGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
.....C---ATTT-TT--AGTCGATCGGTTG--------TTACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
....TC---ATTT-TT--AGTCGATCGGTTG--------TTACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...................GTCGATCGGTTG--------TTACGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.........ATTT-TT--AGTCGATCGGTTG--------TTACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.......................................................TTTTTTATCGTTATAGTGTAGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
..........................................................TTTATCGTTATAGTGTAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droVir3
AAT------------T---GTTGCGCTAT----ATATAA-----TTATTTTTTTTTTTTGTTTTGTTGTAGTGTAGTGTAAATAAAACATAAACATT--------AGCAT-----TATGATTACGCT--CACT---------------------AATAATAGTTACGGC--------------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------------GAATAT----------------------TATTATAAATAT----------------------------TTAATATTAATATTACGTTAAAAATCCGAGT-----------------GAA---ACTTGCAATTTTG---------------------------------------------------------------AAATGGCA-AAAACAAGTGTGTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................TTTGTTGTAGTGTAGTGTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
......................................................TTTTTGTTTTGTTGTAGTGTAGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................ATAAAACATAAACATT--------AGCAT-----C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000

Generated: 05/18/2015 at 11:35 AM