ID:

dsi_17388

 Coordinate:

2r:5529382-5529531 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-47.4 -47.2 -47.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCTGGGCCAGAGCACCTACCTGCCGGATTTGGCGCGGGCGGAGACCAAAGGTAAGTCCGCCCCTCAGTGCGAGGCATTCAAATTAGCCGCGAGTGCCGCACTCGACCAGCAATGCTGACATTGATTTATGCGAGTCCACCATTTGGCTTTTATGGCCACTGCCCAACGGAGCAGGGGTTCGATTCTGCAGAAGAATCGGAGCATCGGTAACTACCAGGTGTGGGTGGTAATGGTGGTGATGGTGGTGCCG
**************************************************........((((((((((((..(((((((...........)))))))))))).)).((((...)))).....(((((....))))).......(((((.....))))).(((((...)).))))))))((((((((.....)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
...........................................................................................................................................................................................CAGACGAATCAGAGGATCGG........................................... 20 3 5 2.60 13 13 0 0 0 0 0 0 0 0
...........................................................................................................AGCAATGCTGACATTGAT............................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGTGGGTGTTAATGATGGTTAT.......... 22 3 2 1.00 2 0 2 0 0 0 0 0 0 0
..........AGCACCAACGTCCCGGATTT............................................................................................................................................................................................................................ 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................TCAGGGGTTCGATTC................................................................. 15 1 11 0.27 3 0 0 0 3 0 0 0 0 0
....................TGTTGGATTTGGCGCGGGCGA................................................................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0
...............................................................TCAGTGCGAGGAATT............................................................................................................................................................................ 15 1 12 0.25 3 1 0 0 2 0 0 0 0 0
....................................................................................................................................................................AACGGGGAAGGGGTTCGA.................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................AACAGGGGTTCGATT.................................................................. 15 1 6 0.17 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................TACTAGGTGTGGGAGGT...................... 17 2 6 0.17 1 0 0 0 0 1 0 0 0 0
............................................CCAAAGGTAAGTCTG............................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 1
..................CCTGCCGGACTTGGC......................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................AACGGAATAAGGGTTCGAT................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................GGGTTCGATTCTGGAG............................................................ 16 1 17 0.06 1 0 0 0 1 0 0 0 0 0
.......................................................................................CGCGGCTGTCGCACTCGAC................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................TCGGAACATCGGTAGC....................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................GATCAGGGGTTCGATC.................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CAGACGAATCAGAGGATCG............................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................CCGGGGTTCGATTCTCC.............................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CGACCCGGTCTCGTGGATGGACGGCCTAAACCGCGCCCGCCTCTGGTTTCCATTCAGGCGGGGAGTCACGCTCCGTAAGTTTAATCGGCGCTCACGGCGTGAGCTGGTCGTTACGACTGTAACTAAATACGCTCAGGTGGTAAACCGAAAATACCGGTGACGGGTTGCCTCGTCCCCAAGCTAAGACGTCTTCTTAGCCTCGTAGCCATTGATGGTCCACACCCACCATTACCACCACTACCACCACGGC
**************************************************........((((((((((((..(((((((...........)))))))))))).)).((((...)))).....(((((....))))).......(((((.....))))).(((((...)).))))))))((((((((.....)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.......................................................AGGCGGGGAGTCGCGCTCGGT.............................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0
.............................................................................................ACGGCATGAGCTGGTCG............................................................................................................................................ 17 1 2 0.50 1 0 1 0 0 0
..............GGCTGGACGGCCTAA............................................................................................................................................................................................................................. 15 1 5 0.40 2 1 0 0 1 0
..........................................................................................................................................................................CGTCCTCAAGCTTAAACGTCTT.......................................................... 22 3 3 0.33 1 1 0 0 0 0
............................................................................................CACGGCGTGAGCGGGT.............................................................................................................................................. 16 1 6 0.17 1 0 0 1 0 0
................................................................................................................................................................................................CTTAGGCTCGTAGTCTTTGAT..................................... 21 3 7 0.14 1 0 1 0 0 0
...........................................................................................................................TAAATACGCTGAGGACGTAA........................................................................................................... 20 3 10 0.10 1 0 0 1 0 0
..................................................................................................................................................................................................TAGCGTCGAAGCCATTG....................................... 17 2 17 0.06 1 0 1 0 0 0
......................................................................................................................................................ATACCGGCGACGCGTTG................................................................................... 17 2 20 0.05 1 0 0 1 0 0
......................................GGCTTTGGTTTCCATCCA.................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 1
.....................................................................................CGGTGCTGACGGCGTGA.................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0
.................................................CCAGTCAGGCGGGGCG......................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0

Generated: 04/23/2015 at 04:07 PM