ID:

dsi_17364

 Coordinate:

3r:19135064-19135306 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_19135052_19135063_+]; five_prime_UTR [3r_19134878_19135051_+]; CDS [3r_19135307_19135450_+]; exon [3r_19135307_19135450_+]; exon [3r_19134878_19135063_+]; intron [3r_19135064_19135306_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATCTCGTCCAATCCAAGTCAGCCACTGAGCAGCCGGCATGGAGATGAGTGTAAGTAGAAGCTGCGACCTGCGTGCCAGACACCCAGGCCCAAAAGTCACAGCCCAAAACCAAATTGAAAACCGAAACCAGTTCCAACCCGCGCTTCAACCGAGTCAGTCGCACAGCGAATCACTCTTCGAGCTCAACCGTTAGTGCTGGTGAAAGTTACAGCTGTTGCGTTCGCTACGCTGACCTAGTACCCGCCACCTGTGCCCCGATTCCTAATCCTCCAGCGGACACCTGTTATTCCAGGCTGCCATGTTCGCACGCGTGTCCTTCTACCCCACCCTGCTGTACAATGT
****************************************************************************************************************************************************...((((...((((...))))...))))..............********************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR902009
testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M025
embryo
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
....................................................................................................................................................ACCGAGTCAGTCGCACAG................................................................................................................................................................................. 18 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ACTCTTCGAGCTCAACCG......................................................................................................................................................... 18 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
...................................................TAAGTAGAAGCTGCGACCTGC............................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AGTCAGTCGCACAGCGAA............................................................................................................................................................................. 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
................................................................................................................................................................................TTCGAGCTCAACCGTTAGTGCT................................................................................................................................................. 22 0 1 2.00 2 0 0 0 0 0 1 0 1 0 0 0 0
...............................................................................................................................................CTTCAACCGAGTCAGTCGCAC................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TGTTCCGGGCTGCCATGTTCGC.................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................AGCCGGCATGGAGATGAGTGTA.................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................AGATGAGTGTAAGTAGAAGCT........................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................ATTCCTAATCCTCCAGCGGAC................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................AGCCGGCATGGAGATGAGTGT................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................ATGGAGATGAGTGTAAGTAGAA........................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................TGAGCAGCCGGCATGGAGATGAG...................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTCGAGCTCAACCGTTAGTGCC................................................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................TCAGCCACTGAGCAGCCGGCA................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................CTAGTACCCGCCACCTGT........................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........AATCCAAGTCAGCCACTGAGC........................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.....CGTCCAATCCAAGTCAGCCAC............................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................TCCAGCGGACACCTGTTATTCCAG.................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......TCCAATCCAAGTCAGCCACTGAGCAGC..................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................CGAGTCAGTCGCACAGCGAATCACT........................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................TCAACCGAGTCAGTCGCACA.................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CCTCGAGCGGACACC............................................................. 15 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................CCTCGAGCGGACACCA............................................................ 16 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0
..........................TGAGGAGCCTGCATGGAGCT......................................................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGAGCTAGTATCCGCCAGC.............................................................................................. 19 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................ACGCGTGTTATTCTACGCC................. 19 3 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................CGCTTCAATCGAGTCCG......................................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................GCTAATTCGTTAGTGCTGG............................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................GGTTCCAACGCGCGCT...................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

ATAGAGCAGGTTAGGTTCAGTCGGTGACTCGTCGGCCGTACCTCTACTCACATTCATCTTCGACGCTGGACGCACGGTCTGTGGGTCCGGGTTTTCAGTGTCGGGTTTTGGTTTAACTTTTGGCTTTGGTCAAGGTTGGGCGCGAAGTTGGCTCAGTCAGCGTGTCGCTTAGTGAGAAGCTCGAGTTGGCAATCACGACCACTTTCAATGTCGACAACGCAAGCGATGCGACTGGATCATGGGCGGTGGACACGGGGCTAAGGATTAGGAGGTCGCCTGTGGACAATAAGGTCCGACGGTACAAGCGTGCGCACAGGAAGATGGGGTGGGACGACATGTTACA
*********************************************************************************************************************************************************...((((...((((...))))...))))..............**************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 O001
Testis
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
....................................................................................................................................................TGGCTCAGTCAGCGTGTCGCT.............................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AGCGTGTCGCTTAGTGAGAAG.................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................AGGGAGATGGGGTGGGAC........... 18 1 4 1.50 6 6 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTTGGTTTAACTTTTGGC........................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TTGGGGTGGGACGACATGTTACA 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GGTTTTCAGTGTCGGGTTTT.......................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTTTCAATGTCGACAACGCAA......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............AGGTTCAGTCGGTGACTCG........................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
TTAGAGCAGGTTAGGTTCAGTC................................................................................................................................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AGTTGGCTCAGTCAGCGTGTC................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..........ATAGGTTCAGTCGGTGACTCGT....................................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TTCGGGTTTTGGTTTAACTTTT.............................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TAAGGTCCGACGGTACAAGC..................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TCGGGTTTTGGTTTAACTTTT.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.TAGAGCAGGTTAGGTTCAGTC................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TCAGCGTGTCGCTTAGTGAG....................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TGCGCACAGGAAGATGGGGTG............... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................TCAGTCGGTGACTCGTCG..................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................TCGCTTGTTGACTATAAGGTC.................................................. 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................AGCTTTGGTGAAGGTTGGG........................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................CACAGGATGTTGGGGT................ 16 2 20 0.35 7 0 0 0 0 0 0 0 0 7 0 0 0
.........................................................................................................................................................................................................................................................................................................................CCGGAAGATGGGCTGGGA............ 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
..TGAGAAGGTTAGGTACAGTC................................................................................................................................................................................................................................................................................................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATGGGCGCGAAGTTGG................................................................................................................................................................................................ 16 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................ACGCAAGCGATGCGG................................................................................................................ 15 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................GGGAAGATGGGGTGGGAC........... 18 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TAAGTCAGGTTGTCGCTTAG........................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................TTTTGGCGGCGGTCAAGGTTG............................................................................................................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................AAGATGGGGTGGGACT.......... 16 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................AAGCTCGAGGAGGCAAT...................................................................................................................................................... 17 2 15 0.13 2 0 0 0 0 0 0 1 1 0 0 0 0
........................................................................................................................................TGGGCGCGAAGTAGG................................................................................................................................................................................................ 15 1 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................TTTGGACGGGGTTGGGCGC........................................................................................................................................................................................................ 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TCCGACTCGATGATGGGC................................................................................................... 18 3 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GAAGCTCGAGGAGGCAATG..................................................................................................................................................... 19 3 20 0.10 2 0 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................CAGGAGGATGGGCTGGGAA........... 19 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................CAGGGAGATGGGCTGGGAA........... 19 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
....................TCGGTGCCTCGTCGGC................................................................................................................................................................................................................................................................................................................... 16 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................................................................................ATAAGGTCAGACGGT........................................... 15 1 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................ATACAAGCGTGCGCAA............................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................ACGCACTGTGGGTCCG.............................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:19135014-19135356 + dsi_17364 TA-TCTCGTCCAATCC---A--------AGTCAG---CCACTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A--------AGCTGCGACCTGCGTGCCA--------GACACCCA----GG--------CCCAAA--AGTCA-----CAGCCCAA-A-------------ACCAAATTGA-AAACCGAAACCAGTTCCAACCCGCGCTTCAACCGAGTCAGTCGCACAGC--GAATC--ACTCT-------TCGAGCTCAACCGT-----------------------TAGTGCTGGTGAAAGT-TA--CAGCTGTTGCGTTCGC--TACGCTGACC---------------T--AGTACCCGCCACCTGTGCCC-----------C-GA-TTCCTAATCCTCCAGCGGA-------------------------------------------------CACCTG----TTATTCCAGGCTGCCATGTTCGCACGCGTGTCCTTCTACCCCACCCTGCTGTACAATGT
droSec2 scaffold_0:19942503-19942845 + dse_573 TA-TCTCGTCCAATCC---A--------AGTCAG---CCACTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A--------AGCTGCGACCTGCGTGCCA--------GACACCCA----GG--------CCCAAA--AGTCA-----TAGCCCAA-A-------------ACCAAATTGA-AAACCGAAACCAGTTCCAACCCGCGCTTCAACCGAGTCAGTCGCACAGC--GAATC--ACTCT-------TCGAGCTCAACCGT-----------------------TAGTGCTGGTGAAAGT-TA--CAGCTGTTGCGTTCGC--TACGCTGACC---------------T--AGTACCCGCCACCTGTGCCC-----------C-GA-TTCCTAATCCTCCAGCGGA-------------------------------------------------CACCTG----TTATTCCAGGCTGCCATGTTCGCACGCGTGTCCTTCTACCCCACCCTGCTGTACAATGT
dm3 chr3R:19584201-19584546 + TG-TCTCGTCCAATCC---A--------AGTCAG---CCACTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A--------AGCTGCGACCTGCGTGCCA--------GACACCCA----GA--------CCCAAA--AGTCA-----CAGCCCAA-A-------------ACCAAATTGA-AAACCGAAACCAGTTCCAACCCGCGCTTCAACCGAGTGAGTCGCACAGC--GAATC--ACTCT-------TCGAGCTCAGCCGT-----------------------TAGTGCTGGTGAAAGT-TA--CAGCTGTTGCGTTCGC--TACGTTCGCT------AC---C---T--AGTAACCGCCACCTGTGCCC-----------C-GA-TTCCTAATCCTCCAGTCGA-------------------------------------------------CACCTG----TTATTTCAGGCTGCCATGTTCGCACGCGTTTCCTTCTACCCCACCCTGCTGTACAATGT
droEre2 scaffold_4820:8459990-8460330 - TG-TCTCGTCCAATCCCG------------TCAG---CCACTGTG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A--------AGCTGCGAAATGCGTGCCA--------GACGCCCA----GA--------CTCAAA--AGTCA-----CAGCCCAA-A-------------ACCGAATTGA-AAACCGAAACCAGTTCCAAACCGCGCTTCAATCGAGTCAGTCGCACAGC--GAATC--ACTCT-------TCGACCTCAGCCTT-----------------------TAGTGCTGGTGAAAGT-TA--CAGCTGTTGC-TTCGC--TTCGCTGACC---------------C--AGTATCCGCCACCTGTCCCC-----------C-TA-TTCCTAATCCTCCGCCGGA-------------------------------------------------CACCTG----TTATTCCAGGCTGCCATGTTCGCACGCGTGTCCTTCTACCCCACCCTGCTGTACAATGT
droYak3 3R:20490700-20491041 + TG-TCTCGTCCAATCCCG------------TCAG---CCTCAGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A--------AGCTGCGCCCTGCGTGCCA--------GACACCCA----GA--------CTCAAAA-AGTCA-----CAGCCCAA-A-------------ACCGAATTTA-AAATCGAAACCAGTTCCAAACCGCGCTTCAACCGAGTCAGTCGCACAGC--GAATC--ACTCT-------TCGAGCTCAGCCGT-----------------------TTGTGCTGGTGAAAGT-TA--CAGCTGTTGC-TTTGC--CCCGCTGACC---------------C--AGTACTTGCCACCTGTCCCC-----------C-GA-TTCCTAATCCTCCAACGGA-------------------------------------------------CACCTG----TTATTCCAGGCTGCCATGTTCGCACGTGTGTCCTTCTACCCCACCCTGCTGTACAATGT
droEug1 scf7180000409798:803428-803751 - TG-TGTCGATCGTTCCCGCC--------AGTCAG---CCATTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A---------------AGCTGCGTGCCA--------GACACCCA----AA--------CCCAAA--ACCC--------------------------------AAACCAA-AAACAGAAACCAGTTCCAAGCCGCGCTTTAAGCGAGTCAGTCGTACAAC--GAATC--ACTAT-------TTAAGTTCGACTGC-----------------------CAGCGCTGGTGAAAGT-TA--CAGCTGTCGCGTTTGC--CCCCCTGGCC------A-----------AATACT---CACCTTTCCCC-----------GTGTATTC-TTATCCTCCATCGGA-------------------------------------------------CATCTG----TGATTCCAGGCTGCCATGTTTGCACGTGTGTCCTTCTACCCCACCCTGCTGTACAATGT
droBia1 scf7180000302075:5140081-5140427 + TG-TCTTGATCCATCCCGCC--------AGTCAG---CCACTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A--------GCCAGCGACCTGCGTGCCA--------GACACCTA----GC-CCAGA--CCCAGA---------------CCCAC-A-------------TCCCAAGCCG-AAAGCGAAACCAGTTCCAATCCGCGCTTCAAGCGAGTCAGTCGAACGGC--GAATC--AGTAC-------TTAAGCTCGAGCGC-----------------------CAGCGCTGGTGAAAGT-TA--CAGCTGTTGCGTTTGC--TCCCCTGACC------G-----------ACTACT---CACCTGCCCCC-----------C-GT-TTCCTGACCCCAAACCGACCA---------CCACCTGTG---------------------------------TG----TGCTTCCAGGCTGCCATGTTCGCACGCGTCTCCTTCTACCCCACCCTGCTGTACAATGT
droTak1 scf7180000415765:1341054-1341408 - TG-TCTCGATCGATCCCGCC--------AGTCAG---CCACAGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-AA-GCAG-AAGCAGCGACCTGCGTGCCA--------GACACCCA----GG--------CCCAAA--------------GCCTAAAACCCCAAAGCCCCAACCCAAACCA-AAAGCGAAACCAGTTCCAATCCGCGCTTCAAGCGAGTCAGTCGTACAGC--GAATC--AGTTT-------TTAAGCTCGACCGC-----------------------CAGCGCTGGTGAAAGT-TA--CAGCTGTTGCGATTGC--TCCCCTGACC------G-----------AATACT---CACCTGTCC-----------------------------------------AAATACCCCACCTGTG----------------------ACCCCATCATCTG----TGATTCCAGGCTGCCATGTTCGCACGCGTCTCCTTCTACCCCACCCTGCTGTACAATGT
droEle1 scf7180000486474:636068-636407 + TG-TCTCGATCGATCCCGCCAGTCAGCCAGTCAG---CCAGTGAG---CAGCCGGCATGGAGATGAGTGTAAGTTACA---------------ATCTGCATGCCAGTGCCAGAGACACCCA----AG--------CCCAAA--ACCC----------------------------------------AAATCGAAACCAGTTCCAAGCCGCGTTTCGTTCAAGTCAGTCGCACAGCGCGAATC--ACTAT-------TTAAGCTCGACCGC-----------------------CAGCGCTGGTGAAAGT-TA--CAGCTGTTGCGTTTGA--GCCCCCGACC------GA----AAT-AGAGTACT---CACCTGTCCCCTGACCCTG----TGA-TTCCT---------GTGAA-------------------------------------------------TTCCTG----TGATTCCAGGCCGCCATGTTCGCACGCGTGTCCTTCTACCCCACCCTGCTGTACAATGT
droRho1 scf7180000777205:35809-36146 + TG-TCTCGATCGATCCCGCC--------AGTCAG---CCAGTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAGTG---------------ACCTGCGTGCCA--------GACACCTA----GG--------CCCAAA--ACCCAACCGCCAGCCCAA-A-------------------TCCGAAACCCGAAACCAGTTCCGAGCCGCGTTTCGTTCGAGTCAGTCGCACAGC--GAATC--ACTAT-------TTAAGCTCGACCGC-----------------------TAGCGCTGGTGAAAGT-TA--CAGCTGTTGCGTTTGC--TCCTCTGACA------AA----------AATACT---CACCTGTCACC-----------T-GC-ACCCTGATCCTCCTCCGAT-------------------------------------------------CCCCTG----TGATTCCAGGCCGCCATGTTCGCACGAGTGTCCTTTTACCCCACCCTGCTGTACAATGT
droFic1 scf7180000453800:1755394-1755745 + TG-TCTCCATCAATCCCGCC--------AGTCAG---CCACTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAGCAA-GTAGCAAGTAGTGCCCTGCGTGCCA--------GACACCCA----GG--------CCCAAA--ACCCA-------------------------------AAATCCA-AAACCGAAACCAGTTCCAAGCCGCGCTTCAACCAAGTCAGTCGCACTGC--GAATC--AGTAT-------TTAAGTTAGACCGC-----------------------CAGCGCTGGTGAAAGT-TACACAGCTGTTGCGTTTGC--CTC-CTGGCAAACCACTCTCCC---TT-GAAACT---CACCTGTTTC-----------------TTCCCGATCCTTCAACGATCTC----------------------------------------------CTCCTG----ACATTCCAGGCCGCCATGTTTGCGCGTGTATCCTTCTACCCCACCCTCCTGTACAATGT
droKik1 scf7180000302639:2992536-2992865 - TG-TCTCGATCGATCCCGAC--------AG-CAG---CCAACGAG---CACCCGGCATGGAGATGAGTGTAAGTAGAG---------------CCCTGCGTGCCA--------GACACCCA----GG--------CCCAAA--ACCCA-----GAAGCCGC-A-------------GTCGAAGCAG-AAACCGAAACCAGTTCCAAGCCGCGCTTCGAGCGAGTCAGTCAAACAGC--GAATC--ATTAT-------TTAAACTTGGTTGT-----------------------CGGCGCTGGTGAAAGT-TA--CAGCTGTTGCGCACAC--TCCCCCGACC------G------------TTACT---CACCTGTCTCC-----------C-CG-CTCCTGCTCT-----GGGC-------------------------------------------------CACCTG----TAATTCCAGGCTGCTATGTTCGCGCGTGTATCCTTCTATCCCACCCTCCTCTACAATGT
droAna3 scaffold_13340:19949099-19949407 - TG-TCTTGATCGATCCCGCC--------AGCCAC---CCAGTGTG---CACCCGGCATGGAGATGAGTGTAAGTAGCG---------------ACTTGCGTACCA--------GACACCCA----GG--------C--AAAAGCCC---------------------------------------C-AAACCGAAACCAGTTCCAATCCGCGCTTCGTTCGAGACAGTCAGAAAGC--GAATC--AGTAT-------TTAAGACTGTCTAA-----------------------GAGAGCTGGTGAAAGT-TA--CAGCTGTTGCGCACGC--TCCCTTGGCC------AT----------CACATT---GACCTGTTCCC-----------CTGA-TTCCCACTTT-----------------------------------------------------------ACCCC----CTATTCCAGGCTGCTATGTTCGCGCGTGTCTCCTTCTACCCCACCCTGCTGTACAATGT
droBip1 scf7180000396413:2445611-2445919 + TG-TCTTGATCGATCCCGCC--------AGCCAC---CCAGTGGG---CACCCGGCATGGAGATGAGTGTAAGTAGCG---------------ACTTGCGTACCA--------GACACCCA----GG--------C--AAA--AG-----------CC---------------------------C-AAACCGAAACCAGTTCCAATCCGCGCTTCGTTCGAGACAGTCAGAAAGC--GAATC--AGTAC-------TTAAGACTGTCTAA-----------------------GAGAGCTGGTGAAAGT-TA--CAGCTGTTGCGCACGC--TCCCTTGCCC------AT----------CATACT---GACCTGTGCCC-----------CTCA-TTCCCACTAT----------------------------------------------------------ACCCCC----CTATTCCAGGCTGCTATGTTCGCGCGTGTATCCTTCTATCCCACCCTGCTGTACAATGT
dp5 2:12828643-12828991 + TG-TCTCG----AACCCAC------------CAG---CAGCTGAGCTACAACCGGCATGGAGATGAGTGTAAGTAGCG-------------CGAGATTACTGCCA--------GACACGAGTGGATGGACTGC-T-TCAAA--AGCGG-----CT---------------------GGCTCATCGG-AAACCGAAACCAGTTCCAAAGCGCGCCTCAAGCAAGACAGACAGACAAGA-CAACC--A-TATTCTGTGCTCATGCTCATCTGC------------CCC---CCCCAGCGAGCTGGTGAAAGTTTA--CAGCTGTTGCGAGCTC--CACGCTGCCC------AA----AAC-AGAAT------AACCATTCC-----------------------------------------ATT-------------------------TGTGTGTGTGTCCC---CATCTA----TAATTTAAGGCTGCTATGTTCGCACGTGTGTCCTTCTACCCCACCCTGCTCTACAATGT
droPer2 scaffold_0:7628825-7629176 - TG-TCTCGA---AT-CCAC------------CAG---CAGCTGAGCACCAACCGGCATGGAGATGAGTGTAAGTAGCG-------------CGAGATTACTGCCA--------GACACGAGTGGATGGACTGC-T-TCAAA--AGCGG-----CT---------------------GGCTCATCGG-AAACCGAAACCAGTTCCAAAGCGCGCCTCAAGCAAGACAGACAGACAAGA-CAACC--A-TATTCTGTGCTCATGCTCATCTGC------------CCCCCCCCCCAGCGAGCTGGTGAAAGTTTA--CAGCTGTTGCGAGATC--CACGCTGCCC------AA----AAC-AGAAT------AACCATTCC-----------------------------------------ATT-------------------------TGTGTGTGTGTCCC---CATCTA----TAATTTAAGGCTGCTATGTTCGCACGTGTGTCCTTCTACCCCACCCTGCTCTACAATGT
droWil2 scf2_1100000004921:3341229-3341568 - dwi_3027 TC-TG-------------CC--------CGCCAA---TACAAAAA---TAAAAGGCATGGAGATGAGTGTAAGTAGCA---------------TATTTAGTGCCA--------GACACCGCTCTATG-ACAGC-G-GCAAG---------------CGCTG-A-------------AGCGAAGCAGAAACCTAAAACCAGTTTCAATTCGAGCTTCACACGAGACAGACAGTTGGCT-ATATA--CATAT-------ATAGTTTTGATAGACTGGCTCATCTG-------T---C--CATTGGTGAAAGTTTA--CAGCTGTTGTGCTTAA--CACAC---------------------------------ACATATTTTTAAAGTCCAGGAA-TT-TTTTGAATTAAAAAGC--TCTTC---TTGTTCC---------------------------------------------TTTCCAAAGGCTGCTATGCTAGCAAGAGTTTCTTTTTACCCCACCCTGCTGTATAATGT
droVir3 scaffold_13047:18463680-18464016 - dvi_17514 TTCTTTTG----AACCGGA--------------GAAGC--TCGAA---AAAACGGCATGGAGATGAGTGTAAGTTACGAC--G----GCAGTG-GCTGCAAGCCA--------GCC--CCT----GGCACTGCGC-TCAAC-------------------------------------AACA-----TCAATGAAACCAGTTCCAAGCCGCGCTCCAAGCGACTCAGACAGTCACG---CATTAAATTAT-------TCATGCTTAACTTC-----------------------GTTAGCTGGTGAAAGTTTA--CAGCTGTTGCAGTCTCCGTACTCTACAC---------------C--CGAAAACGTA----GAGCGT-----------C-AA-TTATTAATCCCACACC--TCTCC---TTACCCACCTGTG---------------------------------TAT---CAATTAAAGGCGGCTATGCTTGCTCGTGTGTCCTTTTATCCGACGCTGCTCTACAATGT
droMoj3 scaffold_6540:25958427-25958753 + TT-----G----AACCAA-----------A---GAAGCAACAC-------AAAAGCATGGAAATGAGTGTAAGTTACGGC--AG-CGACTGCA----AGGTATCA--------CATA--CT----GGCATTGCGT-TCAAC--AGCG----------------------------------------TCAATAAAACCAGTTCCAAGCCGCGCTCCAACCGATTCAGACTGTCA-C--GCATTAGATTAT-------TCATGCTAAACGTC-----------------------GTAAGCTGGTGAAAGTTTC--CAGCTGTTGCAGCCCA--TACGCTAGAC---------------C--CGAAAACGTA----GAGCGT-----------C-AA-TTATTTATCCTTAA-C--TCTCC---TCTCCCACCTGTG---------------------------------TAT---CAATTCAAGGCGGCAATGCTTGCACGGGTCTCCTTTTATCCAACGCTGCTCTACAATGT
droGri2 scaffold_15074:6236604-6236927 + -----------------------------------------------------GGCATTGAAATGAGTGTAAGTTACGAT--GA-C------G-ACTGCAACCCA--------GGTAC--A----AACACTGCGA-TCAAC-------------------------------------AACA-----TCAATGAAACCAGTTCCAAGCCGCGCTCCAAACGACTCAGACAGTCACG---CATTAAACAAT-------TCATGCTTAAC------------------------------GGCGGTGAAAGTTTA--CAGCTGTTGTCGCCCT--TACGCTAAGC---------------G--TGAACACGTCG--AGTGACG-----------C-TA-TTACTAATCCTAATTC--TCTCC---TTGCCCACCTGTGTGCCTCTGTGTTTGTGTGTGTGTG---------TATCAACCCCTAAAGGCGGCTATGCTTGCACGTGTCTCCTTCTACCCGACGCTCCTCTACAATGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TA-TCTCGTCCAATCC---A--------AGTCAG---CCACTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A--------AGCTGCGACCTGCGTGCCA--------GACACCCA----GG--------CCCAAA--AGTCA-----CAGCCCAA-A-------------ACCAAATTGA-AAACCGAAACCAGTTCCAACCCGCGCTTCAACCGAGTCAGTCGCACAGC--GAATC--ACTCT-------TCGAGCTCAACCGT-----------------------TAGTGCTGGTGAAAGT-TA--CAGCTGTTGCGTTCGC--TACGCTGACC---------------T--AGTACCCGCCACCTGTGCCC-----------C-GA-TTCCTAATCCTCCAGCGGA-------------------------------------------------CACCTG----TTATTCCAGGCTGCCATGTTCGCACGCGTGTCCTTCTACCCCACCCTGCTGTACAATGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................ACCGAGTCAGTCGCACAG...........................................................................................................................................................................................................................................................................................................1814.00440000000000000000
.....................................................................................................................................................................................................................................................ACTCT-------TCGAGCTCAACCG........................................................................................................................................................................................................................................................................1812.00210000000000100000
.....................................................................TAAGTAG-A--------AGCTGCGACCTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00202000000000000000
.............................................................................................................................................................................................................................AGTCAGTCGCACAGC--GAA.....................................................................................................................................................................................................................................................................................................1812.00200000000002000000
.........................................................................................................................................................................................................................................................T-------TCGAGCTCAACCGT-----------------------TAGTGCT.........................................................................................................................................................................................................................................2212.00200100010000000000
....................................................................................................................................................................................................................CTTCAACCGAGTCAGTCGCAC.............................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.................................................AGCCGGCATGGAGATGAGTGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
............................................................AGATGAGTGTAAGTAG-A--------AGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................A-TTCCTAATCCTCCAGCGGA-------------------------------------------------C....................................................................2111.00101000000000000000
.................................................AGCCGGCATGGAGATGAGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
........................................................ATGGAGATGAGTGTAAGTAG-A--------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
.........................................TGAG---CAGCCGGCATGGAGATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.........................................................................................................................................................................................................................................................T-------TCGAGCTCAACCGT-----------------------TAGTGCC.........................................................................................................................................................................................................................................2211.00100100000000000000
..............................TCAG---CCACTGAG---CAGCCGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................C---------------T--AGTACCCGCCACCTGT.............................................................................................................................................................1811.00100000100000000000
...........AATCC---A--------AGTCAG---CCACTGAG---C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
......CGTCCAATCC---A--------AGTCAG---CCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCGGA-------------------------------------------------CACCTG----TTATTCCAG..................................................2411.00100000000000100000
........TCCAATCC---A--------AGTCAG---CCACTGAG---CAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...........................................................................................................................................................................................................................CGAGTCAGTCGCACAGC--GAATC--ACT..............................................................................................................................................................................................................................................................................................2511.00100000000000100000
......................................................................................................................................................................................................................TCAACCGAGTCAGTCGCACA............................................................................................................................................................................................................................................................................................................2011.00100000100000000000
droSec2
TA-TCTCGTCCAATCC---A--------AGTCAG---CCACTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A--------AGCTGCGACCTGCGTGCCA--------GACACCCA----GG--------CCCAAA--AGTCA-----TAGCCCAA-A-------------ACCAAATTGA-AAACCGAAACCAGTTCCAACCCGCGCTTCAACCGAGTCAGTCGCACAGC--GAATC--ACTCT-------TCGAGCTCAACCGT-----------------------TAGTGCTGGTGAAAGT-TA--CAGCTGTTGCGTTCGC--TACGCTGACC---------------T--AGTACCCGCCACCTGTGCCC-----------C-GA-TTCCTAATCCTCCAGCGGA-------------------------------------------------CACCTG----TTATTCCAGGCTGCCATGTTCGCACGCGTGTCCTTCTACCCCACCCTGCTGTACAATGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................AGCCGGCATGGAGATGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020110
................................AG---CCACTGAG---CAGCCGGCATGGAGATGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010001
.........................................................................................................................................................................................................................................................T-------TCGAGCTCAACCGT-----------------------TAGTGCT.........................................................................................................................................................................................................................................2211.0010010
.........................................................................................................................................................................................................................................................................AACCGT-----------------------TAGTGCTGGTGAAA..................................................................................................................................................................................................................................2011.0010010
........................................................................................................................................................................................................................................................CT-------TCGAGCTCAACCGT-----------------------TAGTG...........................................................................................................................................................................................................................................2111.0010100
.......................................................................................................................................................................................................................................................................................................................................TCGC--TACGCTGACC---------------T--AGTACCC......................................................................................................................................................................2211.0011000
...........................................................................................................................................................................................................................CGAGTCAGTCGCACAGC--GAATC--ACT..............................................................................................................................................................................................................................................................................................2511.0010100
..............................................................................................................................................................................................................................GTCAGTCGCACAGC--GAATC--ACTCT-------TCGAG................................................................................................................................................................................................................................................................................2911.0010100
.....................................................................................................................................................................................................................................................ACTCT-------TCGAGCTCAACCGT-----------------------TAGTG...........................................................................................................................................................................................................................................2411.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCATGTTCGCACGCGTGTC...........................2211.0010100
................................AG---CCACTGAG---CAGCCGGCATGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.........................................................................TAG-A--------AGCTGCGACCTGCGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.........................................................................................................................................................................................................................ACCGAGTCAGTCGCACAGC--G.......................................................................................................................................................................................................................................................................................................2011.0010010
....................................................................................................................................................................................................................................................................................................................GT-TA--CAGCTGTTGCGTTCGC--TA.......................................................................................................................................................................................................2211.0010010
........................................................................................................................................................................................................................AACCGAGTCAGTCGCACAGC--GAA.....................................................................................................................................................................................................................................................................................................2311.0010001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCGTGTCCTTCTACCCCA................2111.0011000
dm3
TG-TCTCGTCCAATCC---A--------AGTCAG---CCACTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A--------AGCTGCGACCTGCGTGCCA--------GACACCCA----GA--------CCCAAA--AGTCA-----CAGCCCAA-A-------------ACCAAATTGA-AAACCGAAACCAGTTCCAACCCGCGCTTCAACCGAGTGAGTCGCACAGC--GAATC--ACTCT-------TCGAGCTCAGCCGT-----------------------TAGTGCTGGTGAAAGT-TA--CAGCTGTTGCGTTCGC--TACGTTCGCT------AC---C---T--AGTAACCGCCACCTGTGCCC-----------C-GA-TTCCTAATCCTCCAGTCGA-------------------------------------------------CACCTG----TTATTTCAGGCTGCCATGTTCGCACGCGTTTCCTTCTACCCCACCCTGCTGTACAATGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................ACCGAGTGAGTCGCACAG...........................................................................................................................................................................................................................................................................................................18122.00220000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000010100000000000301000001000010000000000010000000010100000000000100000001001000000000000000
.........................................................................................................................................................................................................................ACCGAGTGAGTCGCACAGC--GAA.....................................................................................................................................................................................................................................................................................................22111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000100010001200000011000002000
.................................................................................................................................................................................................................................................................................................................AAAGT-TA--CAGCTGTTGCGTTC.............................................................................................................................................................................................................21110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AGTGAGTCGCACAGC--GAA.....................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................ACTCT-------TCGAGCTCAGCCG........................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000100000000000100000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................ACCGAGTGAGTCGCACAGC--........................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000100000000000000000
................................................................................................................................................................................................................CGCGCTTCAACCGAGTGAG...................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000200000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GCTGTTGCGTTCGC--TACG.....................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000
.G-TCTCGTCCAATCC---A--------AGTCAG---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................CGCTTCAACCGAGTGAGTCGC...............................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.....................................................................................................................................................................................................................TTCAACCGAGTGAGTCGCA..............................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000
.........................................................................................................................................................................................................................ACCGAGTGAGTCGCACAGC--GA......................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000
........TCCAATCC---A--------AGTCAG---CCACTGAG---CAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CT-------TCGAGCTCAGCCGT-----------------------TAGTG...........................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000
..............................TCAG---CCACTGAG---CAGCCGGCATGGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CGCGCTTCAACCGAGTGAGTCG................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000
..........................................................................................................................................................................................................................CCGAGTGAGTCGCACAGC--........................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................CGCTTCAACCGAGTGAGTCG................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000
.....................................................................................................................................................................................................................................................ACTCT-------TCGAGCTCAGCCGT-----------------------TAGT............................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
................................................CAGCCGGCATGGAGATGAGTGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..............................................................ATGAGTGTAAGTAG-A--------AGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............TCC---A--------AGTCAG---CCACTGAG---CAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................AGCTGTTGCGTTCGC--TACGCC...................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCGA-------------------------------------------------CACCTG----TTATTTC....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TA--CAGCTGTTGCGTTCGC--TA.......................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................CCGAGTGAGTCGCACAGC--GAA.....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GA-TTCCTAATCCTCCAGTCGA-------------------------------------------------.....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................AACCGAGTGAGTCGCACAG...........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CGTTCGC--TACGTTCGCT------AC---....................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CGCACAGC--GAATC--ACTCT-------TCGAG................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................ACTCT-------TCGAGCTCAGCCGT-----------------------TAG.............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................................................................................................................................................................................................................................................................................................................GT-TA--CAGCTGTTGCGTTCGC--T........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......CGTCCAATCC---A--------AGTCAG---CCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGTTCGCACGCGTG.............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................AGTCGCACAGC--GAATC--ACTCT-------TCGAGC...............................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................ACCCGCGCTTCAACCGAG.......................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
..............CC---A--------AGTCAG---CCACTGAG---CAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.............TCC---A--------AGTCAG---CCACTGAG---CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CAG---CCACTGAG---CAGCCGGCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.............................................................GATGAGTGTAAGTAG-A--------AGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GAGTGTAAGTAG-A--------AGCTGCGACCTGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CAGCCGGCATGGAGATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................TC--ACTCT-------TCGAGCTCAGCCGT-----------------------TAGTT...........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CTCT-------TCGAGCTCAGCCGT-----------------------TAGTG...........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................CCGCGCTTCAACCGAGTGAG...................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..................................................................................................................................................CA-----CAGCCCAA-A-------------ACCAAATTG.............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................A--------AGTCAG---CCACTGAG---CAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CGCGCTTCAACCGAGTGAGTC.................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TGGTGAAAGT-TA--CAGCTGTTGCGTT..............................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................GCCGGCATGGAGATGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGTCGA-------------------------------------------------CACCTG----TTATT......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TGCTGGTGAAAGT-TA--CAGCTGTTGC.................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TA--CAGCTGTTGCGTTCGC--TAC......................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCTACCCCACCCTGCTGT.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GATGAGTGTAAGTAG-A--------AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................CTCT-------TCGAGCTCAGCCGT-----------------------TAG.............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................ACCGAGTGAGTCGCACAGC--GAATC--.................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTCAACCGAGTGAGTCGC...............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTCAACCGAGTGAGTCGCACAGC--GAA.....................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AGTGCTGGTGAAAGT-TA--CA.........................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................................................................................................................................GT-TA--CAGCTGTTGCGTTCGC--.........................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............TCC---A--------AGTCAG---CCACTGAG---CAGCCGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AGCCGGCATGGAGATGAGTGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GTGAAAGT-TA--CAGCTGTTGCG................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................................................................ATC--ACTCT-------TCGAGCTCAGCC.........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGAG---CAGCCGGCATGGAGATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AG-A--------AGCTGCGACCTGCGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................GAGTGTAAGTAG-A--------AGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................T-----------------------TAGTGCTGGTGAAAGT-TA--CA.........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..........................................................................................................................................................................................................................................................................GCCGT-----------------------TAGTGCTGGTGAAAGT-TA--CAGCT......................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......GTCCAATCC---A--------AGTCAG---CCACTGAG---CAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GCGCTTCAACCGAGTGAG...................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GCCGT-----------------------TAGTGCTGGTGAAAG.................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CTCT-------TCGAGCTCAGCCGT-----------------------................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AGCTGTTGCGTTCGC--TAC......................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................CCGCGCTTCAACCGAGTGAGTCG................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
...................A--------AGTCAG---CCACTGAG---CAGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCAGGCTGCCATGTTCG.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CGCACAGC--GAATC--ACTCT-------TCGAGCTC.............................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
..........................................GAG---CAGCCGGCATGGAGATGAGTGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................AGTCAG---CCACTGAG---CAGCCGGCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................GAGTGAGTCGCACAGC--GATC....................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AGTAG-A--------AGCTGCGACCTGCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................................................................AG-A--------AGCTGCGACCTGCGTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.....................................................................................................................................................................................................................................GCACAGC--GAATC--ACTCT-------TCGAGCTCAGC..........................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................GCGCTTCAACCGAGTGAGTC.................................................................................................................................................................................................................................................................................................................2011.0010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............C---A--------AGTCAG---CCACTGAG---CAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AGC--GAATC--ACTCT-------TCGAGCTC.............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................ATC--ACTCT-------TCGAGCTCAGCCG........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................A--------AGTCAG---CCACTGAG---CAGCCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................AACCGAGTGAGTCGCACAGC--GAATC--.................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................CGAGTGAGTCGCACAGC--GAATC--A................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GCTTCAACCGAGTGAGTCGCA..............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
droEre2
TG-TCTCGTCCAATCCCG------------TCAG---CCACTGTG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A--------AGCTGCGAAATGCGTGCCA--------GACGCCCA----GA--------CTCAAA--AGTCA-----CAGCCCAA-A-------------ACCGAATTGA-AAACCGAAACCAGTTCCAAACCGCGCTTCAATCGAGTCAGTCGCACAGC--GAATC--ACTCT-------TCGACCTCAGCCTT-----------------------TAGTGCTGGTGAAAGT-TA--CAGCTGTTGC-TTCGC--TTCGCTGACC---------------C--AGTATCCGCCACCTGTCCCC-----------C-TA-TTCCTAATCCTCCGCCGGA-------------------------------------------------CACCTG----TTATTCCAGGCTGCCATGTTCGCACGCGTGTCCTTCTACCCCACCCTGCTGTACAATGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGCTGCCATGTTCGCACG.................................2111.0011000000
.................................G---CCACTGTG---CAGCCGGCATGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
...................................................................................................................................................................................................................GCTTCAATCGAGTCAGTCG................................................................................................................................................................................................................................................................................................................1911.0010000010
..........................................................................................................................................................................................................................................................................GCCTT-----------------------TAGTGCTGGTGAAAGT-TA--C..........................................................................................................................................................................................................................2411.0010000100
droYak3
TG-TCTCGTCCAATCCCG------------TCAG---CCTCAGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A--------AGCTGCGCCCTGCGTGCCA--------GACACCCA----GA--------CTCAAAA-AGTCA-----CAGCCCAA-A-------------ACCGAATTTA-AAATCGAAACCAGTTCCAAACCGCGCTTCAACCGAGTCAGTCGCACAGC--GAATC--ACTCT-------TCGAGCTCAGCCGT-----------------------TTGTGCTGGTGAAAGT-TA--CAGCTGTTGC-TTTGC--CCCGCTGACC---------------C--AGTACTTGCCACCTGTCCCC-----------C-GA-TTCCTAATCCTCCAACGGA-------------------------------------------------CACCTG----TTATTCCAGGCTGCCATGTTCGCACGTGTGTCCTTCTACCCCACCCTGCTGTACAATGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGTGTCCTTCTACCCCACCCTGCT.........2711.00101000000000
.......GTCCAATCCCG------------TCAG---CCTCAGAG---CAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCATGTTCGCACGTGTGTC...........................2311.00100000010000
................................AG---CCTCAGAG---CAGCCGGCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
......CGTCCAATCCCG------------TCAG---CCTCAGAG---C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.......................................................................................................................................................................................................................CAACCGAGTCAGTCGCACAGC--G.......................................................................................................................................................................................................................................................................................................2211.00100000010000
....................................................................................................................................................................................................................CTTCAACCGAGTCAGTCGCAC.............................................................................................................................................................................................................................................................................................................2111.00100100000000
.......GTCCAATCCCG------------TCAG---CCTCAGAG---C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
......CGTCCAATCCCG------------TCAG---CCTCAGAG---CAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
........................................................................................................................................................................................................................AACCGAGTCAGTCGCACAGC--........................................................................................................................................................................................................................................................................................................2011.00100100000000
..........................................................................................................................................................................................................................................................................GCCGT-----------------------TTGTGCTGGTGAAAGT-TA--C..........................................................................................................................................................................................................................2411.00100010000000
droEug1
TG-TGTCGATCGTTCCCGCC--------AGTCAG---CCATTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A---------------AGCTGCGTGCCA--------GACACCCA----AA--------CCCAAA--ACCC--------------------------------AAACCAA-AAACAGAAACCAGTTCCAAGCCGCGCTTTAAGCGAGTCAGTCGTACAAC--GAATC--ACTAT-------TTAAGTTCGACTGC-----------------------CAGCGCTGGTGAAAGT-TA--CAGCTGTCGCGTTTGC--CCCCCTGGCC------A-----------AATACT---CACCTTTCCCC-----------GTGTATTC-TTATCCTCCATCGGA-------------------------------------------------CATCTG----TGATTCCAGGCTGCCATGTTTGCACGTGTGTCCTTCTACCCCACCCTGCTGTACAATGTSizeHit CountTotal NormTotal
No Reads
droBia1
TG-TCTTGATCCATCCCGCC--------AGTCAG---CCACTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-A--------GCCAGCGACCTGCGTGCCA--------GACACCTA----GC-CCAGA--CCCAGA---------------CCCAC-A-------------TCCCAAGCCG-AAAGCGAAACCAGTTCCAATCCGCGCTTCAAGCGAGTCAGTCGAACGGC--GAATC--AGTAC-------TTAAGCTCGAGCGC-----------------------CAGCGCTGGTGAAAGT-TA--CAGCTGTTGCGTTTGC--TCCCCTGACC------G-----------ACTACT---CACCTGCCCCC-----------C-GT-TTCCTGACCCCAAACCGACCA---------CCACCTGTG---------------------------------TG----TGCTTCCAGGCTGCCATGTTCGCACGCGTCTCCTTCTACCCCACCCTGCTGTACAATGTSizeHit CountTotal NormTotal
No Reads
droTak1
TG-TCTCGATCGATCCCGCC--------AGTCAG---CCACAGAG---CAGCCGGCATGGAGATGAGTGTAAGTAG-AA-GCAG-AAGCAGCGACCTGCGTGCCA--------GACACCCA----GG--------CCCAAA--------------GCCTAAAACCCCAAAGCCCCAACCCAAACCA-AAAGCGAAACCAGTTCCAATCCGCGCTTCAAGCGAGTCAGTCGTACAGC--GAATC--AGTTT-------TTAAGCTCGACCGC-----------------------CAGCGCTGGTGAAAGT-TA--CAGCTGTTGCGATTGC--TCCCCTGACC------G-----------AATACT---CACCTGTCC-----------------------------------------AAATACCCCACCTGTG----------------------ACCCCATCATCTG----TGATTCCAGGCTGCCATGTTCGCACGCGTCTCCTTCTACCCCACCCTGCTGTACAATGTSizeHit CountTotal NormTotal
No Reads
droEle1
TG-TCTCGATCGATCCCGCCAGTCAGCCAGTCAG---CCAGTGAG---CAGCCGGCATGGAGATGAGTGTAAGTTACA---------------ATCTGCATGCCAGTGCCAGAGACACCCA----AG--------CCCAAA--ACCC----------------------------------------AAATCGAAACCAGTTCCAAGCCGCGTTTCGTTCAAGTCAGTCGCACAGCGCGAATC--ACTAT-------TTAAGCTCGACCGC-----------------------CAGCGCTGGTGAAAGT-TA--CAGCTGTTGCGTTTGA--GCCCCCGACC------GA----AAT-AGAGTACT---CACCTGTCCCCTGACCCTG----TGA-TTCCT---------GTGAA-------------------------------------------------TTCCTG----TGATTCCAGGCCGCCATGTTCGCACGCGTGTCCTTCTACCCCACCCTGCTGTACAATGTSizeHit CountTotal NormTotal
No Reads
droRho1
TG-TCTCGATCGATCCCGCC--------AGTCAG---CCAGTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAGTG---------------ACCTGCGTGCCA--------GACACCTA----GG--------CCCAAA--ACCCAACCGCCAGCCCAA-A-------------------TCCGAAACCCGAAACCAGTTCCGAGCCGCGTTTCGTTCGAGTCAGTCGCACAGC--GAATC--ACTAT-------TTAAGCTCGACCGC-----------------------TAGCGCTGGTGAAAGT-TA--CAGCTGTTGCGTTTGC--TCCTCTGACA------AA----------AATACT---CACCTGTCACC-----------T-GC-ACCCTGATCCTCCTCCGAT-------------------------------------------------CCCCTG----TGATTCCAGGCCGCCATGTTCGCACGAGTGTCCTTTTACCCCACCCTGCTGTACAATGTSizeHit CountTotal NormTotal
No Reads
droFic1
TG-TCTCCATCAATCCCGCC--------AGTCAG---CCACTGAG---CAGCCGGCATGGAGATGAGTGTAAGTAGCAA-GTAGCAAGTAGTGCCCTGCGTGCCA--------GACACCCA----GG--------CCCAAA--ACCCA-------------------------------AAATCCA-AAACCGAAACCAGTTCCAAGCCGCGCTTCAACCAAGTCAGTCGCACTGC--GAATC--AGTAT-------TTAAGTTAGACCGC-----------------------CAGCGCTGGTGAAAGT-TACACAGCTGTTGCGTTTGC--CTC-CTGGCAAACCACTCTCCC---TT-GAAACT---CACCTGTTTC-----------------TTCCCGATCCTTCAACGATCTC----------------------------------------------CTCCTG----ACATTCCAGGCCGCCATGTTTGCGCGTGTATCCTTCTACCCCACCCTCCTGTACAATGTSizeHit CountTotal NormTotal
No Reads
droKik1
TG-TCTCGATCGATCCCGAC--------AG-CAG---CCAACGAG---CACCCGGCATGGAGATGAGTGTAAGTAGAG---------------CCCTGCGTGCCA--------GACACCCA----GG--------CCCAAA--ACCCA-----GAAGCCGC-A-------------GTCGAAGCAG-AAACCGAAACCAGTTCCAAGCCGCGCTTCGAGCGAGTCAGTCAAACAGC--GAATC--ATTAT-------TTAAACTTGGTTGT-----------------------CGGCGCTGGTGAAAGT-TA--CAGCTGTTGCGCACAC--TCCCCCGACC------G------------TTACT---CACCTGTCTCC-----------C-CG-CTCCTGCTCT-----GGGC-------------------------------------------------CACCTG----TAATTCCAGGCTGCTATGTTCGCGCGTGTATCCTTCTATCCCACCCTCCTCTACAATGTSizeHit CountTotal NormTotal
No Reads
droAna3
TG-TCTTGATCGATCCCGCC--------AGCCAC---CCAGTGTG---CACCCGGCATGGAGATGAGTGTAAGTAGCG---------------ACTTGCGTACCA--------GACACCCA----GG--------C--AAAAGCCC---------------------------------------C-AAACCGAAACCAGTTCCAATCCGCGCTTCGTTCGAGACAGTCAGAAAGC--GAATC--AGTAT-------TTAAGACTGTCTAA-----------------------GAGAGCTGGTGAAAGT-TA--CAGCTGTTGCGCACGC--TCCCTTGGCC------AT----------CACATT---GACCTGTTCCC-----------CTGA-TTCCCACTTT-----------------------------------------------------------ACCCC----CTATTCCAGGCTGCTATGTTCGCGCGTGTCTCCTTCTACCCCACCCTGCTGTACAATGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........CGATCCCGCC--------AGCCAC---CCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTATGTTCGCGCGTGTCTCCTT........................2511.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATGTTCGCGCGTGTC.............................1911.001001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTTCGCGCGTGTCTCCTT........................2211.001100000
droBip1
TG-TCTTGATCGATCCCGCC--------AGCCAC---CCAGTGGG---CACCCGGCATGGAGATGAGTGTAAGTAGCG---------------ACTTGCGTACCA--------GACACCCA----GG--------C--AAA--AG-----------CC---------------------------C-AAACCGAAACCAGTTCCAATCCGCGCTTCGTTCGAGACAGTCAGAAAGC--GAATC--AGTAC-------TTAAGACTGTCTAA-----------------------GAGAGCTGGTGAAAGT-TA--CAGCTGTTGCGCACGC--TCCCTTGCCC------AT----------CATACT---GACCTGTGCCC-----------CTCA-TTCCCACTAT----------------------------------------------------------ACCCCC----CTATTCCAGGCTGCTATGTTCGCGCGTGTATCCTTCTATCCCACCCTGCTGTACAATGTSizeHit CountTotal NormTotal
No Reads
dp5
TG-TCTCG----AACCCAC------------CAG---CAGCTGAGCTACAACCGGCATGGAGATGAGTGTAAGTAGCG-------------CGAGATTACTGCCA--------GACACGAGTGGATGGACTGC-T-TCAAA--AGCGG-----CT---------------------GGCTCATCGG-AAACCGAAACCAGTTCCAAAGCGCGCCTCAAGCAAGACAGACAGACAAGA-CAACC--A-TATTCTGTGCTCATGCTCATCTGC------------CCC---CCCCAGCGAGCTGGTGAAAGTTTA--CAGCTGTTGCGAGCTC--CACGCTGCCC------AA----AAC-AGAAT------AACCATTCC-----------------------------------------ATT-------------------------TGTGTGTGTGTCCC---CATCTA----TAATTTAAGGCTGCTATGTTCGCACGTGTGTCCTTCTACCCCACCCTGCTCTACAATGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................GTGCTCATGCTCATCTGC------------CCC---.....................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................CCGAAACCAGTTCCAAAGCGC...................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................AGATGAGTGTAAGTAGCG-------------CG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCGCACGTGTGTCCTTCTACCC..................2511.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCACGTGTGTCCTTCTACCCCACCC.............2711.0010100000000
...........................................................................................................................................................................................................................................................CTGTGCTCATGCTCATCTGC------------C..........................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................GACAGACAGACAAGA-CAACC--A-TATTC..........................................................................................................................................................................................................................................................................................2611.0010000100000
.........................................................................................................................................................................................................................AGCAAGACAGACAGACAA...........................................................................................................................................................................................................................................................................................................1811.0010000100000
TG-TCTCG----AACCCAC------------CAG---CAGCTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.......................................................................................................CA--------GACACGAGTGGATGGACTG..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATGTTCGCACGTGTGTCCTT........................2411.0010100000000
droPer2
TG-TCTCGA---AT-CCAC------------CAG---CAGCTGAGCACCAACCGGCATGGAGATGAGTGTAAGTAGCG-------------CGAGATTACTGCCA--------GACACGAGTGGATGGACTGC-T-TCAAA--AGCGG-----CT---------------------GGCTCATCGG-AAACCGAAACCAGTTCCAAAGCGCGCCTCAAGCAAGACAGACAGACAAGA-CAACC--A-TATTCTGTGCTCATGCTCATCTGC------------CCCCCCCCCCAGCGAGCTGGTGAAAGTTTA--CAGCTGTTGCGAGATC--CACGCTGCCC------AA----AAC-AGAAT------AACCATTCC-----------------------------------------ATT-------------------------TGTGTGTGTGTCCC---CATCTA----TAATTTAAGGCTGCTATGTTCGCACGTGTGTCCTTCTACCCCACCCTGCTCTACAATGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA----TAATTTAAGGCTGCT............................................1812.002200000
................................................CAACCGGCATGGAGATGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
........................................CTGAGCACCAACCGGCATGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................................AGACAGACAAGA-CAACC--A-...............................................................................................................................................................................................................................................................................................1811.001000010
droWil2
TC-TG-------------CC--------CGCCAA---TACAAAAA---TAAAAGGCATGGAGATGAGTGTAAGTAGCA---------------TATTTAGTGCCA--------GACACCGCTCTATG-ACAGC-G-GCAAG---------------CGCTG-A-------------AGCGAAGCAGAAACCTAAAACCAGTTTCAATTCGAGCTTCACACGAGACAGACAGTTGGCT-ATATA--CATAT-------ATAGTTTTGATAGACTGGCTCATCTG-------T---C--CATTGGTGAAAGTTTA--CAGCTGTTGTGCTTAA--CACAC---------------------------------ACATATTTTTAAAGTCCAGGAA-TT-TTTTGAATTAAAAAGC--TCTTC---TTGTTCC---------------------------------------------TTTCCAAAGGCTGCTATGCTAGCAAGAGTTTCTTTTTACCCCACCCTGCTGTATAATGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................AGACAGTTGGCT-ATATA--C................................................................................................................................................................................................................................................................................................1811.00100001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTAGCAAGAGTTTCTTTT.......................2111.00100100
.....................................................................................................................................................................................................................TTCACACGAGACAGACAGTTGGCT-A.......................................................................................................................................................................................................................................................................................................2511.00100010
..........................................AAA---TAAAAGGCATGGAGATGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..........................................................................................................................................................................................................................ACGAGACAGACAGTTGGCT-AT......................................................................................................................................................................................................................................................................................................2111.00100010
.............................................................................................................................................................................................................ATTCGAGCTTCACACGAGACAGACA................................................................................................................................................................................................................................................................................................................2511.00100100
...............................................................................................................................................................................................TAAAACCAGTTTCAATTCGAG..................................................................................................................................................................................................................................................................................................................................2111.00100001
.......................................................................................................................................................................................................................CACACGAGACAGACAGTTGGCT-A.......................................................................................................................................................................................................................................................................................................2311.00110000
.............................................................................................................................................................................................................ATTCGAGCTTCACACGAGACA....................................................................................................................................................................................................................................................................................................................2111.00100100
..........................................................................................................................................................................................................................................................................................................ATTGGTGAAAGTTTA--CAGCT......................................................................................................................................................................................................................2011.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAGC--TCTTC---TTGTTCC---------------------------------------------TTTCC......................................................2111.00100010
..............................................................................................................................................................................................................................GACAGACAGTTGGCT-ATA.....................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
TTCTTTTG----AACCGGA--------------GAAGC--TCGAA---AAAACGGCATGGAGATGAGTGTAAGTTACGAC--G----GCAGTG-GCTGCAAGCCA--------GCC--CCT----GGCACTGCGC-TCAAC-------------------------------------AACA-----TCAATGAAACCAGTTCCAAGCCGCGCTCCAAGCGACTCAGACAGTCACG---CATTAAATTAT-------TCATGCTTAACTTC-----------------------GTTAGCTGGTGAAAGTTTA--CAGCTGTTGCAGTCTCCGTACTCTACAC---------------C--CGAAAACGTA----GAGCGT-----------C-AA-TTATTAATCCCACACC--TCTCC---TTACCCACCTGTG---------------------------------TAT---CAATTAAAGGCGGCTATGCTTGCTCGTGTGTCCTTTTATCCGACGCTGCTCTACAATGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................CTGGTGAAAGTTTA--CAGCT......................................................................................................................................................................................................................1912.002000000000000000000000000000002000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTCC---TTACCCACCTGTG---------------------------------TAT---C..........................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................CGACTCAGACAGTCACG---CATT...................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................CAC---------------C--CGAAAACGTA----GAGCGT-----------C-AA-TT.......................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TACAC---------------C--CGAAAACGTA----GAGCG..........................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
..................................................AACGGCATGGAGATGAGTGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................TCATGCTTAACTTC-----------------------GTTAGCTGGTGAAA..................................................................................................................................................................................................................................2811.001000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................AGCCGCGCTCCAAGCGACTCAGACAGTC.............................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................TCCAAGCGACTCAGACAGT..............................................................................................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCCTTTTATCCGACGC.............2111.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................TCAATGAAACCAGTTCCAAGC......................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TCCAAGCGACTCAGACAGTC.............................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
.............................................................GATGAGTGTAAGTTACGAC--G----G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................ACTCAGACAGTCACG---CATTAAATTA.............................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....TTTG----AACCGGA--------------GAAGC--TC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TGTTGCAGTCTCCGTACTCTA..................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..........................................GAA---AAAACGGCATGGAGATGAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................AAGTTTA--CAGCTGTTGCAGTC.............................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TAGCTGGTGAAAGTTTA--CAG........................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................AT-------TCATGCTTAACTTC-----------------------GTTAG...........................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
...............................................................TGAGTGTAAGTTACGAC--G----GCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
TTCTTTTG----AACCGGA--------------GAAGC--T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.TCTTTTG----AACCGGA--------------GAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000100000000000000000000000000000000000000000000
droMoj3
TT-----G----AACCAA-----------A---GAAGCAACAC-------AAAAGCATGGAAATGAGTGTAAGTTACGGC--AG-CGACTGCA----AGGTATCA--------CATA--CT----GGCATTGCGT-TCAAC--AGCG----------------------------------------TCAATAAAACCAGTTCCAAGCCGCGCTCCAACCGATTCAGACTGTCA-C--GCATTAGATTAT-------TCATGCTAAACGTC-----------------------GTAAGCTGGTGAAAGTTTC--CAGCTGTTGCAGCCCA--TACGCTAGAC---------------C--CGAAAACGTA----GAGCGT-----------C-AA-TTATTTATCCTTAA-C--TCTCC---TCTCCCACCTGTG---------------------------------TAT---CAATTCAAGGCGGCAATGCTTGCACGGGTCTCCTTTTATCCAACGCTGCTCTACAATGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................TTTC--CAGCTGTTGCAGCCCA--TACGCTAG.................................................................................................................................................................................................2811.001100000
........................................................ATGGAAATGAGTGTAAGTTACGGC--AG-C................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droGri2
-----------------------------------------------------GGCATTGAAATGAGTGTAAGTTACGAT--GA-C------G-ACTGCAACCCA--------GGTAC--A----AACACTGCGA-TCAAC-------------------------------------AACA-----TCAATGAAACCAGTTCCAAGCCGCGCTCCAAACGACTCAGACAGTCACG---CATTAAACAAT-------TCATGCTTAAC------------------------------GGCGGTGAAAGTTTA--CAGCTGTTGTCGCCCT--TACGCTAAGC---------------G--TGAACACGTCG--AGTGACG-----------C-TA-TTACTAATCCTAATTC--TCTCC---TTGCCCACCTGTGTGCCTCTGTGTTTGTGTGTGTGTG---------TATCAACCCCTAAAGGCGGCTATGCTTGCACGTGTCTCCTTCTACCCGACGCTCCTCTACAATGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:13 PM