ID:

dsi_17346

 Coordinate:

3l:15680049-15680198 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_15680199_15681029_+]; exon [3l_15680199_15681029_+]; intron [3l_15678936_15680198_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGATGATTATCATTTTGCATGTCCCATTTGCATGCGTAATCAAATCGGGTCACCCTAAGTATCATTATAGTATGCAATTGATATTTACATATATGTTATATAAATAGTGAGAAATTATTTGATTTTTGTTTGAAACACACTCGCGTCCATCGCCTTAGGACAACTGTTTTTTATTTGTTCCGAACTAATATTATTAACAGAACGAAACAAGCTCTGCATCATCGACATCTGCTCCAACACCATCGATCCT
**************************************************...((((((..(((((((..((((.(((..((((....))))..))).)))).)))))))((((((....))))))((((...)))).....(((.....)))))))))....(((((...((((.(((...))).)))).....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M023
head
............................................................................................................................................................................................................................ATCGACATCTGCTCCAACACC......... 21 0 1 2.00 2 2 0 0 0
.....................................................................................................................................AACCAACTCGCGTCCATCGGC................................................................................................ 21 3 1 1.00 1 0 1 0 0
............................................................................................................................................................................................TATTATTAACAGATCGAAAC.......................................... 20 1 2 0.50 1 1 0 0 0
.................CAAGTCCCATCGGCATGCGTA.................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0
......................................................................................................................................ACCAACTCGCGTCCATCGGC................................................................................................ 20 3 9 0.11 1 0 1 0 0
..........................................................................................................................................................TTCGGACAACTGTATTTTATTTA......................................................................... 23 3 9 0.11 1 0 0 1 0
.................................................................................................................................TTAAAACGCACTCGCGACC...................................................................................................... 19 3 18 0.06 1 0 0 0 1

Anti-sense strand reads

ACTACTAATAGTAAAACGTACAGGGTAAACGTACGCATTAGTTTAGCCCAGTGGGATTCATAGTAATATCATACGTTAACTATAAATGTATATACAATATATTTATCACTCTTTAATAAACTAAAAACAAACTTTGTGTGAGCGCAGGTAGCGGAATCCTGTTGACAAAAAATAAACAAGGCTTGATTATAATAATTGTCTTGCTTTGTTCGAGACGTAGTAGCTGTAGACGAGGTTGTGGTAGCTAGGA
**************************************************...((((((..(((((((..((((.(((..((((....))))..))).)))).)))))))((((((....))))))((((...)))).....(((.....)))))))))....(((((...((((.(((...))).)))).....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
........................................................................................................................................................GGAATCCTGTAGACGCAA................................................................................ 18 3 20 1.75 35 2 27 0 0 2 0 3 1
............................................................................................................................AAACAAACTTTGTGTGAG............................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................AGCGGAATCCTGTGGACGCAA................................................................................ 21 3 3 0.67 2 0 0 2 0 0 0 0 0
...............................................TCAGGGGGATTCATAGT.......................................................................................................................................................................................... 17 2 2 0.50 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................CGGAATCCTGTGGAC.................................................................................... 15 1 5 0.40 2 1 0 1 0 0 0 0 0
.....................................................................................................................................................AGCGGAATCCTGTGGACGCA................................................................................. 20 3 5 0.40 2 2 0 0 0 0 0 0 0
......................................................................................................................................................GGGGAATCCTGTGGAC.................................................................................... 16 2 14 0.36 5 1 0 1 0 0 3 0 0
...................................................................................................................................................................................................CTGTCTTGCTGTGTTAGAGACGT................................ 23 3 3 0.33 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................AGCGGAATCCTGTGGACG................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0
......................................................................................................................................................GCGGAATCCTGTGGACGCAA................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................AAAAAATAAAGACGGCTCGATT.............................................................. 22 3 9 0.11 1 0 0 0 0 1 0 0 0
..........................GAACGTACGCATTAGGT............................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 1 0 0 0 0 0
......................GGTTGAACGTACGGATTAG................................................................................................................................................................................................................. 19 3 20 0.10 2 0 0 2 0 0 0 0 0

Generated: 04/23/2015 at 05:24 PM