dsi_17345

exon [2r_12883900_12884086_-]; CDS [2r_12883900_12884086_-]; intron [2r_12884087_12885468_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTCGAGCCTAGTTTCCTTCAAACTAATTCAATACGATTTTTAGATCAATTACTATTACTATGTATTTTTTCAATTTCGTTTTGTACTTAAACATTAATTGAACAACCCGTTTGTTCAGCTAGTCAACTAAGAAAATTAGCGTACTTTGTGCCAGTCAGACTTAACTAACACCGATTTTCCATCGCATCGATCATCAATAGCCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAT ************************************************.(((((...((((.......(((.......))).......))))....(((((((.....)))))))((((((...........)))))).......(((..(((........)))..)))((((.....))))...........)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
..................................................................................................................................................................................................................................TTCCAATGGGACATGGCCAAGT..	22	0	1	1.00	1	1	0	0	0	0
....................................TTTTTAGATCACTTACTATTACATT.............................................................................................................................................................................................	25	3	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................CCGATTCCAATGGGACAT..........	18	1	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................GAACTACCCCAGTACTTGACCCG.........................	23	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................ACACCGAACTACCCCAGTACTT...............................	22	3	2	0.50	1	0	1	0	0	0
.................................................................................................................................................................................................................................CTTCCACTGGGACATGGACA.....	20	2	5	0.20	1	0	0	0	1	0
..............................................................TATCTATTCAATTTCGTTCTG.......................................................................................................................................................................	21	3	15	0.13	2	0	0	0	0	2
..................................................................................................GGAACACCCCGTTTGTT.......................................................................................................................................	17	2	11	0.09	1	0	0	1	0	0

AAGCTCGGATCAAAGGAAGTTTGATTAAGTTATGCTAAAAATCTAGTTAATGATAATGATACATAAAAAAGTTAAAGCAAAACATGAATTTGTAATTAACTTGTTGGGCAAACAAGTCGATCAGTTGATTCTTTTAATCGCATGAAACACGGTCAGTCTGAATTGATTGTGGCTAAAAGGTAGCGTAGCTAGTAGTTATCGGCTTGATGGGGTCATGAACTGGGCGAAGGTTACCCTGTACCGGTTCATA ************************************************.(((((...((((.......(((.......))).......))))....(((((((.....)))))))((((((...........)))))).......(((..(((........)))..)))((((.....))))...........)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs	M025 embryo	SRR553485 Chicharo_3 day-old ovaries
..........................................................................................................GGAAAACAAGTCTATCAGTTGT..........................................................................................................................	22	3	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................TTTATCGGCTTGGTGTGGTCA...................................	21	3	3	0.33	1	0	1	0	0	0
...........................................................................................................GAAAACAAGTCTATCAGTTGT..........................................................................................................................	21	3	4	0.25	1	1	0	0	0	0
..............................................................................................................................................................................AAAAGGGCGCGAAGCTAGTAG.......................................................	21	3	4	0.25	1	0	1	0	0	0
.........................................TCGAGTTAATGATAATGC...............................................................................................................................................................................................	18	2	6	0.17	1	1	0	0	0	0
...................................................................................................................GCCGATCTGTTGATTC.......................................................................................................................	16	2	20	0.10	2	1	0	0	0	1
......................................AAATCTAGTGAATGAT....................................................................................................................................................................................................	16	1	10	0.10	1	0	0	1	0	0
............................................AGTTAATGATAATGTT..............................................................................................................................................................................................	16	1	14	0.07	1	0	0	1	0	0
.........................................TCAAGTTAATGATAATGC...............................................................................................................................................................................................	18	2	14	0.07	1	0	0	1	0	0
.........................................TCAAGTTAATGATAA..................................................................................................................................................................................................	15	1	20	0.05	1	0	0	1	0	0
....................................................................................................................CCGCTCAGATGATTCTTT....................................................................................................................	18	3	20	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	2r:12884037-12884286 -	dsi_17345	TTCGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CAA---TACG-ATTT-T-TAGA-TCAATTACTATTACTATGTA-T--T-TTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACC---CGTTT-----------------------------------------G--------TTCAGCTAGTC---------------------------AACTAAGAAAA-TTAGCG-------------TA-------CTTTGTGCCA-GT-CAGA----CTTAACTAACA--------CCGATTTT-------CCAT---CGCATCG--ATCATC---AATAGCCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAT
droSec2	scaffold_1:9713952-9714201 -		TTCGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CAA---TACG-ATTT-T-TAGA-TCAATTACTATTACTATGTA-T--T-TTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACC---CGTTT-----------------------------------------G--------TTCAGCTAGTC---------------------------AATTAAGAAAA-TTAGCG-------------TT-------CTTTGTGCCA-GT-CAGA----CTTAACTAATA--------CCGATTTC-------CCAT---CGCATCG--ATCATC---AATAGCCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAT
dm3	chr2R:12214616-12214866 -		TTCGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CAA---TACG-ATTT-T-TAGA-TCAATTACAATTACTATGTA-T--TTTTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACC---AGTTT-----------------------------------------G--------TTCAGCTAGTC---------------------------AACTAAGAAAA-TTAGCG-------------TA-------TTTCGTGCCA-GT-CAGA----TTTAACTAATA--------CCGATATT-------CCAT---TGCATCG--ATCATC---AATAGCCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAT
droEre2	scaffold_4845:13647245-13647493 +		TTCCAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CAA---TACG-ATTT-T-TAGA-TCAATTACTATTACTATGTA-T--T-TTTT----------------CAATTTCGTTTCGTA----CTTAAACATTAATTGA----ACAACC---CGTTT-----------------------------------------G--------TTCAGCTAGTC---------------------------AACTAAGAAAA-TAATTG-------------CG-------ATTTGTGCCA-AT-CAGA----TTTAACTAATA--------CCGATTTT-------CCA----CGCATCG--ATCATC---AATAGCCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAC
droYak3	2R:16771186-16771432 +		TTCGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CAA---TACG-ATTT-T-TAGA-TCAATTACTATTACTATGTA-TTTC-TTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACC---TGTTT-----------------------------------------G--------TTCAGCTAGTC---------------------------AACTAAGAAAT-TGATCG-------------CG-------ATTTGTGCCA-AT-CAGA----TTTAACTAACA--------CCGATTTT-------TCA----CGCATCG--AT-------CATAGCCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAC
droEug1	scf7180000409672:2961869-2962107 +		TTCGAGCTT--AGTTTTCTTC---AATCTA-----------------ATT---------------------------CTA---TATA-ACTT-T-TAGA-ACAATTAC------TATGTA-T--TTTTTT----------------CGATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAATC---CGTTT-----------------------------------------G--------TTCTGCTAGAC----C----------------------AACTAAGTAAA-TTGATG-------------AA-------TTTTGTGATT-TA-AAGA----TTTAACTAATA--------AT---T---TGTAA-TTA----CG-------A--ATT--AAATAGCCGAACTGCCTCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAC
droBia1	scf7180000301506:2737176-2737414 +		TTCGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CTA---CACA-ACTT-A-TAGA-TCAATTAC------TATGTA-T--T-TTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACC---CGTTT-----------------------------------------G--------TTCTGCTAGCC---------------------------AACTAAGTGAA-AT--TT-------T-----GA-------TTTTGTAATA-AT-GGGA----TCTAACTAACA--------CTGATTTTCTGT---CCA------C---------AT-AAAAATAGCCGAACTGCCGCAGTACTTGACCCGCTTCCAGTGGGACATGGCCAAGTAC
droTak1	scf7180000416016:801242-801486 -		TTTGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CTA---TACA-ACTT-A-TAGA-TCAATTAC------TATGTA-T--T-TTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACC---CGTTT-----------------------------------------G--------TTCTGCTAGCC---------------------------AACTAAGTGAA-TTATTT-------T-----GG-------CCTTGTGATA-GT-CAGA----TTTAACTAATA--------CCTTTTT---GT---CCAT---CCAATCA--ATC----AAAATAGCCGAACTGCCGCAGTACTTGACCCGCTTCCAGTGGGATATGGCCAAGTAC
droEle1	scf7180000491027:494017-494244 +		TTCAAGCCT--------------------A-----------------ATT---------------------------CTA---TACA-ACTT-T-TAGA-TCAATTAC------TATGTA-T--TTTTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACCAAACGTTT-----------------------------------------G--------TTCTGCTAGTC---------------------------AACTAAGTGAAACCATTG-------------AA------CCATTGCGCCA-TA-CAGC----TTTGACTAATA--------CCCTTTCT-------CTA----CG-------A--ACC--AAATAGCCGAACTGCCGCAGTACTTGACCCGCTTCCAATGGGATATGGCCAAGTAC
droRho1	scf7180000769565:123968-124205 -		TTCGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CTA---TACA-ACTT-T-TAGA-TCAATTAC------TATGTA-T--T-TTTT----------------CTATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACT---CGTTT-----------------------------------------G--------TTCTGCTAGTC---------------------------AACTAAGTGAA-CTATTT-------------AA------TTTTTGTGCTA-TA-CAGC----ATTGACTAATA--------CTCTTTTT-------CTA----CG-------A--ATC--AAATAGCTGAACTGCCGCAGTACTTGACCCGCTTCCAATGGGATATGGCCAAGTAC
droFic1	scf7180000453851:374533-374769 -		TATCAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CTA---TACA-ACTT-T-TAGA-TCAATTAC------TATGAA-T----TTTT----------------CAATTTCGTTTCGTA----CTTAAACATTAATTGG----ACAACC---CGTTT-----------------------------------------G--------TTCTGCTAGTC---------------------------AACTAAGTGAA-CGATAG----------AG-AG-------TCTTATGGTA--T-CAGA----TTTCGCTAACA--------CT---T---TGTT--CTA----CG-------A--ATC-AAAACAGCCGAACTGCCGCAGTACTTGACCCGCTTCCAATGGGATATGGCCAAGTAC
droKik1	scf7180000302470:570544-570801 -		TCCGAGCCTATAGTTTTCTTC---CAACTA-----------------ATT---------------------------CTA---TACA-ACTT-T-TAGA-TCAATTAC------TATGTA-T--TCTTTT----------------TGATTTCGTTTTGTACTTACTTAAACATTAATGGGAACCACAACC---TGTTTGTG--------------------------------------T--------TCCTGCTAGCC---------------------------AACTAAGTCAA-CTATCT-------CGAACGAA------GCCTTGTGCCT-TA-CGGA----CCTCACTAACA--------AT---A---TCTC--CTT----CG-------A--TTT-AATATAGCCGAACTGCCGCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAC
droAna3	scaffold_13266:15592361-15592595 -		TCCGAGCCTATAGTTTCCTTC---A-ACTA-----------------ATT---------------------------CTG---TACA-ACTT-T-TTATACGAATTAC------TATGTA-T--TCTTTT----------------CGATTTCGTTCTGTA----CTTATACAATAATGGA----ACAACC---CGTTT-----------------------------------------G--------TTCAGCTAGTC---------------------------CACTAAGTTTA-ATA--------------------TAAT-------AATTAAAAAAAAATAGTTTAACTAACA--------AGTATTTT-------TTA----CG---------------AAATAGCTGAACTGCCCCAGTACTTGACCCGCTTCCAGTGGGACATGGCCAAGTAC
droBip1	scf7180000396567:84239-84476 -		TCCGAGCCTATAGTTTCCTTC---A-ACTA-----------------ATT---------------------------CTG---TACA-ACTT-T-TTATATGAATTAC------TATGTA-TTTT-TTTT----------------CGATTTCGTTTCGTA----CTTATACAATAATAGA----ACAACC---AGTTT-----------------------------------------G--------TTCAGCTAG-C---------------------------TACTAAGTTAA-TCA----------------CA-------CTT---ACTA-GA--AGA---GTTAAACTAACCTATA----CT---T---TG-----TA----CGATTCT--A-----CGAAATAGCCGAACTGCCCCAGTACTTGACCCGCTTCCAGTGGGACATGGCCAAGTAC
dp5	3:3928664-3928908 +		TTCGAGCGT--A-----------------------------------AAT---------------------------CTA---TATAAACTT-T-TAGT-ACGATTACGATA--TATATA-T--T-TTTT----------------CCCTTCCGTTTTGTA----CTTGAACATTAATTGA----GCAATGAATCATATATG--------------------------------------G--------TTCTGCTCTTC---------------------------CTCTGAGTGAA-CCGACTATCCATGC-AACA-ATATAAT-------GATCC---TGAA----CCCGACTAACT--------CT---C---TGCCGTTTA-------T---CC---CT-TAACACAGCCGAGCTGCCGCAGTATTTGACCCGTTTCCAATGGGACATGGCCAAGTAT
droPer2	scaffold_2:4114786-4115031 +		TTCGAGCGT--A-----------------------------------AAT---------------------------CTA---TATAAACTT-T-TAGT-ACGATTACGATA--TATATA-T--T-TTTT----------------CCCTTCCGTTTTGTA----CTTGAACATTAATTGA----GCAATGAATCATATATG--------------------------------------G--------TTCTGCTCTTC---------------------------CTCTAAGTGAA-CCGACTATCCATGCAAACA-ATATAAT-------GATCC---TGAA----CCCGACTAACT--------CT---C---TGCCGTTTA-------T---CC---CT-TAACACAGCCGAGCTGCCGCAGTATTTGACCCGTTTCCAATGGGACATGGCCAAGTAT
droWil2	scf2_1100000004513:598675-598908 +		TTCAAACGT--TTTTTTTTTTTTTTGTTTATTTCTAGAAGATTTATATTT---------------------------ACC---ATAA-----------------------------------------------------------------------------------ATA--TATGGTAAAAAAAAAA---TATGCATATATATA-----------------------CTGAATATATATTTCAATTTTTGCTAGAT----TTATAAGATTTTTATAACTCATCAA-TAACTGA------------------------------------------------------AAACTAAT-GAGATATTTA------------T-------TAAA---CCA---T-TTATATAGCCAACCTACCCCAGTATTTGACACGTTTCCAATGGGATATGGCTAAATAT
droVir3	scaffold_10324:514139-514326 -		T----------AGTTTGTTTT---ATACTA-----------------ATT---------------------------ACC---AAAA-----------------------------------------------------------------------------------ACAAAAAAGAAAATAA---AT---AGAT---------AACGATTATTTAAATTTTATTTTTCTGGACAAA--------------------------------------------------------------GCTAT--------------------CATTGCGAAA------------GCGTACTAATT--------CCCTTTT--------CCATTCTCAAATCG--A--ATT---AACAGCCGAACTGCCGCAGTATTTAACGCGTTTCCAATGGGACATGGCCAAGTAT
droMoj3	scaffold_6496:2341809-2342049 -	dmo_929	TTTGTACAA--A----------------------------------------------AGGAAAATTTTGTGAAACTCAAGTTT----ATTTTTTCA----ATATTAC------AGCAATAC--A-TAATATTTTATTTATTTTTGA--------AATTTATTTATT--------------------------------------------------------TTATTTTTCTTGTAATAG------TTCTTTGCCAGTAAAATAA-TA------------------AATGAAATGAA-ACATTT-------------TA------TCAATTCGCAA---------------TACTAATC--------CATC-----------TTATTTTGA--------------AATCTAGCCGAACTACCGCAGTATTTAACGCGTTTCCAATGGGATATGGCCAAATAT
droGri2	scaffold_15245:15101468-15101715 +		C----GGTT--TGTTTTGTA-------CTA-----------------AAAACAATAAAAGGAAAT--------GATTCAACTTTTAA-AGTT-T-TAGA-TAAATTAC------AGTAAA-T--T-TTATAATTTA--TATTTTCTA----------------------------AATTTG----ATAATG---GACTA-----------------------------------------G--------TTTTGCTAGTCAGCTACATAAAA--------------------ATGAAA-CAGTTT-------------CT-------CAATGTTCGA-GT---------GTAAACTAATCGATATATTCT---T----------------TGTA---CTC--GA--TAAACAGCCGATCTGCCTCAGTATTTGACCCGTTTCCAATGGGATATGGCCAAGTAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TTCGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CAA---TACG-ATTT-T-TAGA-TCAATTACTATTACTATGTA-T--T-TTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACC---CGTTT-----------------------------------------G--------TTCAGCTAGTC---------------------------AACTAAGAAAA-TTAGCG-------------TA-------CTTTGTGCCA-GT-CAGA----CTTAACTAACA--------CCGATTTT-------CCAT---CGCATCG--ATCATC---AATAGCCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATGGGACATGGCCAAGT..	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACCCCAGTACTTGACCCG.........................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TTCGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CAA---TACG-ATTT-T-TAGA-TCAATTACTATTACTATGTA-T--T-TTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACC---CGTTT-----------------------------------------G--------TTCAGCTAGTC---------------------------AATTAAGAAAA-TTAGCG-------------TT-------CTTTGTGCCA-GT-CAGA----CTTAACTAATA--------CCGATTTC-------CCAT---CGCATCG--ATCATC---AATAGCCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATGGGACATGGCCAAGT..	22	1	2.00	2	0	2	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCAATGGGACATGGC.......	19	1	2.00	2	0	0	2	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACCCGCTTCCAATGGGAC............	21	1	2.00	2	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCAATGGGACATGGCCAAGT..	24	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTTCCAATGGGACATGGC.......	21	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................AAA-TTAGCG-------------TT-------CTTTGTGC................................................................................................................................	19	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATGGGACATGGCCA.....	18	1	1.00	1	1	0	0	0

dm3

TTCGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CAA---TACG-ATTT-T-TAGA-TCAATTACAATTACTATGTA-T--TTTTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACC---AGTTT-----------------------------------------G--------TTCAGCTAGTC---------------------------AACTAAGAAAA-TTAGCG-------------TA-------TTTCGTGCCA-GT-CAGA----TTTAACTAATA--------CCGATATT-------CCAT---TGCATCG--ATCATC---AATAGCCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATGGGACATGGCCAAGT..	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTCCAATGGGACATGGCCA.....	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGACCCGCTTCCAATG................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACCCCAGTACTTGACCCGC........................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTTCCAATGGGACATGGCCAAGT..	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGACATGGCCAAGT..	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTTCCAATGGGACATGGCCAAG...	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCAATGGGACATGGCCAAGTA.	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACCCCAGTACTTGACCC..........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTTCCAATGGGACAT..........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................A----TTTAACTAATA--------CCGATATT-------C...............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCCAGTACTTGACCCGCTT......................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCGCTTCCAATGGGACA...........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCCAGTACTTGACCCGCTTC.....................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATGGGACATGGCCAA....	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGACATGGCCAAGTA.	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTTGACCCGCTTCCA...................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTACTTGACCCGCTTCCA...................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTGACCCGCTTCCAATGGG..............	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATGGGACATGGCCAAGT..	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCAATGGGACATGGCCAAGT..	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTCCAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CAA---TACG-ATTT-T-TAGA-TCAATTACTATTACTATGTA-T--T-TTTT----------------CAATTTCGTTTCGTA----CTTAAACATTAATTGA----ACAACC---CGTTT-----------------------------------------G--------TTCAGCTAGTC---------------------------AACTAAGAAAA-TAATTG-------------CG-------ATTTGTGCCA-AT-CAGA----TTTAACTAATA--------CCGATTTT-------CCA----CGCATCG--ATCATC---AATAGCCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGACCCGCTTCCAATGGGACATGGCC......	29	1	6.00	6	0	0	0	0	0	0	6
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTTGACCCGCTTCCAATGGG..............	24	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATGGGACATGGCCAAG...	21	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTTCCAATGGGACATGGC.......	21	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAATGGGACATGGCCAAGT..	23	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCAATGGGACATGGCCAA....	22	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................GTA-T--T-TTTT----------------CAATTTCGTTTCGTA----CT........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAATGGGACATGGCCA.....	20	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACCCGCTTCCAATGGGAC............	21	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCCCAGTACTTGACCCGCTTCC....................	25	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCGCTTCCAATGGGACATGGC.......	24	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACCCCAGTACTTGACCCGC........................	24	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................TGTA-T--T-TTTT----------------CAATTTCTA....................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0

droYak3

TTCGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CAA---TACG-ATTT-T-TAGA-TCAATTACTATTACTATGTA-TTTC-TTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACC---TGTTT-----------------------------------------G--------TTCAGCTAGTC---------------------------AACTAAGAAAT-TGATCG-------------CG-------ATTTGTGCCA-AT-CAGA----TTTAACTAACA--------CCGATTTT-------TCA----CGCATCG--AT-------CATAGCCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATGGGACATGGCCAAGT..	22	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCGCTTCCAATGGGAC............	20	1	2.00	2	0	1	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATGGGACATGGCCAAG...	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACCCCAGTACTTGACCCGCTT......................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCCAGTACTTGACCCGCTT......................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATGGGACATGGCCAA....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCCAGTACTTGACCCGC........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................TA-----------------ATT---------------------------CAA---TACG-ATTT-T-TAGA-TCAATT.....................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CGAACTACCCCAGTACTTGACCCG.........................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CGAACTACCCCAGTACTTGACCC..........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAATGGGACATGGC.......	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGACCCGCTTCCAAT.................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCAATGGGACATGGCCAAGT..	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCAATGGGACATGGCCAA....	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATGGGACATGGCCAAGC..	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACCCCAGTACTTGACCC..........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTTCCAATGGGACATGGCCAAG...	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCCAGTACTTGACCCGCTTC.....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCCAGTACTTGACCCGCTTCC....................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATGGGACATGGCCAA....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATGGGACATGGCCAAGT..	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCCCAGTACTTGACCCGCT.......................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TA----CTTAAACATTAATTGA----ACA...................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TTCGAGCTT--AGTTTTCTTC---AATCTA-----------------ATT---------------------------CTA---TATA-ACTT-T-TAGA-ACAATTAC------TATGTA-T--TTTTTT----------------CGATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAATC---CGTTT-----------------------------------------G--------TTCTGCTAGAC----C----------------------AACTAAGTAAA-TTGATG-------------AA-------TTTTGTGATT-TA-AAGA----TTTAACTAATA--------AT---T---TGTAA-TTA----CG-------A--ATT--AAATAGCCGAACTGCCTCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTCGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CTA---CACA-ACTT-A-TAGA-TCAATTAC------TATGTA-T--T-TTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACC---CGTTT-----------------------------------------G--------TTCTGCTAGCC---------------------------AACTAAGTGAA-AT--TT-------T-----GA-------TTTTGTAATA-AT-GGGA----TCTAACTAACA--------CTGATTTTCTGT---CCA------C---------AT-AAAAATAGCCGAACTGCCGCAGTACTTGACCCGCTTCCAGTGGGACATGGCCAAGTAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CTA---TACA-ACTT-A-TAGA-TCAATTAC------TATGTA-T--T-TTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACC---CGTTT-----------------------------------------G--------TTCTGCTAGCC---------------------------AACTAAGTGAA-TTATTT-------T-----GG-------CCTTGTGATA-GT-CAGA----TTTAACTAATA--------CCTTTTT---GT---CCAT---CCAATCA--ATC----AAAATAGCCGAACTGCCGCAGTACTTGACCCGCTTCCAGTGGGATATGGCCAAGTAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTCAAGCCT--------------------A-----------------ATT---------------------------CTA---TACA-ACTT-T-TAGA-TCAATTAC------TATGTA-T--TTTTTT----------------CAATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACCAAACGTTT-----------------------------------------G--------TTCTGCTAGTC---------------------------AACTAAGTGAAACCATTG-------------AA------CCATTGCGCCA-TA-CAGC----TTTGACTAATA--------CCCTTTCT-------CTA----CG-------A--ACC--AAATAGCCGAACTGCCGCAGTACTTGACCCGCTTCCAATGGGATATGGCCAAGTAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTCGAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CTA---TACA-ACTT-T-TAGA-TCAATTAC------TATGTA-T--T-TTTT----------------CTATTTCGTTTTGTA----CTTAAACATTAATTGA----ACAACT---CGTTT-----------------------------------------G--------TTCTGCTAGTC---------------------------AACTAAGTGAA-CTATTT-------------AA------TTTTTGTGCTA-TA-CAGC----ATTGACTAATA--------CTCTTTTT-------CTA----CG-------A--ATC--AAATAGCTGAACTGCCGCAGTACTTGACCCGCTTCCAATGGGATATGGCCAAGTAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TATCAGCCT--AGTTTCCTTC---AAACTA-----------------ATT---------------------------CTA---TACA-ACTT-T-TAGA-TCAATTAC------TATGAA-T----TTTT----------------CAATTTCGTTTCGTA----CTTAAACATTAATTGG----ACAACC---CGTTT-----------------------------------------G--------TTCTGCTAGTC---------------------------AACTAAGTGAA-CGATAG----------AG-AG-------TCTTATGGTA--T-CAGA----TTTCGCTAACA--------CT---T---TGTT--CTA----CG-------A--ATC-AAAACAGCCGAACTGCCGCAGTACTTGACCCGCTTCCAATGGGATATGGCCAAGTAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCCGAGCCTATAGTTTTCTTC---CAACTA-----------------ATT---------------------------CTA---TACA-ACTT-T-TAGA-TCAATTAC------TATGTA-T--TCTTTT----------------TGATTTCGTTTTGTACTTACTTAAACATTAATGGGAACCACAACC---TGTTTGTG--------------------------------------T--------TCCTGCTAGCC---------------------------AACTAAGTCAA-CTATCT-------CGAACGAA------GCCTTGTGCCT-TA-CGGA----CCTCACTAACA--------AT---A---TCTC--CTT----CG-------A--TTT-AATATAGCCGAACTGCCGCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTAC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCCGAGCCTATAGTTTCCTTC---A-ACTA-----------------ATT---------------------------CTG---TACA-ACTT-T-TTATACGAATTAC------TATGTA-T--TCTTTT----------------CGATTTCGTTCTGTA----CTTATACAATAATGGA----ACAACC---CGTTT-----------------------------------------G--------TTCAGCTAGTC---------------------------CACTAAGTTTA-ATA--------------------TAAT-------AATTAAAAAAAAATAGTTTAACTAACA--------AGTATTTT-------TTA----CG---------------AAATAGCTGAACTGCCCCAGTACTTGACCCGCTTCCAGTGGGACATGGCCAAGTAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGTGGGACATGGCCAAGT..	22	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCAGTGGGACATGGC.......	19	1	2.00	2	0	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCCAGTACTTGACCCGC........................	21	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGTGGGACATGGCCAA....	20	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCAGTGGGACATGGCC......	20	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTACTTGACCCGCTTC.....................	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCGCTTCCAGTGGGACATGGCC......	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGACCCGCTTCCAGTGGGAC............	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGACCCGCTTCCAGTGGG..............	20	1	1.00	1	0	1	0	0	0	0

droBip1

TCCGAGCCTATAGTTTCCTTC---A-ACTA-----------------ATT---------------------------CTG---TACA-ACTT-T-TTATATGAATTAC------TATGTA-TTTT-TTTT----------------CGATTTCGTTTCGTA----CTTATACAATAATAGA----ACAACC---AGTTT-----------------------------------------G--------TTCAGCTAG-C---------------------------TACTAAGTTAA-TCA----------------CA-------CTT---ACTA-GA--AGA---GTTAAACTAACCTATA----CT---T---TG-----TA----CGATTCT--A-----CGAAATAGCCGAACTGCCCCAGTACTTGACCCGCTTCCAGTGGGACATGGCCAAGTAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

TTCGAGCGT--A-----------------------------------AAT---------------------------CTA---TATAAACTT-T-TAGT-ACGATTACGATA--TATATA-T--T-TTTT----------------CCCTTCCGTTTTGTA----CTTGAACATTAATTGA----GCAATGAATCATATATG--------------------------------------G--------TTCTGCTCTTC---------------------------CTCTGAGTGAA-CCGACTATCCATGC-AACA-ATATAAT-------GATCC---TGAA----CCCGACTAACT--------CT---C---TGCCGTTTA-------T---CC---CT-TAACACAGCCGAGCTGCCGCAGTATTTGACCCGTTTCCAATGGGACATGGCCAAGTAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAATGGGACATGGC.......	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAATGGGACATGGCCAAGT..	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAATGGGACATGGCCA.....	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................CTTC---------------------------CTCTGAGTGAA-CCGACTATCC..........................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCTGCCGCAGTATTTGACCC..........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCGTTTCCAATGGGACATGGCC......	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAATGGGACATGGCCAA....	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGACCCGTTTCCAATGGGAC............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAATGGGACATGGCC......	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGGGACATGGCCAAGT..	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGACCCGTTTCCAATG................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

TTCGAGCGT--A-----------------------------------AAT---------------------------CTA---TATAAACTT-T-TAGT-ACGATTACGATA--TATATA-T--T-TTTT----------------CCCTTCCGTTTTGTA----CTTGAACATTAATTGA----GCAATGAATCATATATG--------------------------------------G--------TTCTGCTCTTC---------------------------CTCTAAGTGAA-CCGACTATCCATGCAAACA-ATATAAT-------GATCC---TGAA----CCCGACTAACT--------CT---C---TGCCGTTTA-------T---CC---CT-TAACACAGCCGAGCTGCCGCAGTATTTGACCCGTTTCCAATGGGACATGGCCAAGTAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAATGGGACATGGC.......	19	1	3.00	3	0	2	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGCAGTATTTGACCC..........................	20	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAATGGGACATGGCCAA....	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATGGGACATGGCCAA....	20	1	1.00	1	0	1	0	0	0	0

droWil2

TTCAAACGT--TTTTTTTTTTTTTTGTTTATTTCTAGAAGATTTATATTT---------------------------ACC---ATAA-----------------------------------------------------------------------------------ATA--TATGGTAAAAAAAAAA---TATGCATATATATA-----------------------CTGAATATATATTTCAATTTTTGCTAGAT----TTATAAGATTTTTATAACTCATCAA-TAACTGA------------------------------------------------------AAACTAAT-GAGATATTTA------------T-------TAAA---CCA---T-TTATATAGCCAACCTACCCCAGTATTTGACACGTTTCCAATGGGATATGGCTAAATAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACACGTTTCCAATGGGAT............	21	1	6.00	6	0	0	5	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACGTTTCCAATGGGAT............	20	1	6.00	6	0	2	4	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGACACGTTTCCAATGGGAT............	25	1	3.00	3	0	0	2	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACGTTTCCAATGGGAT............	19	1	3.00	3	0	1	0	2	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGACACGTTTCCAATGGG..............	21	1	2.00	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGGGATATGGCTAAAT..	19	1	2.00	2	0	0	2	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACACGTTTCCAATGGGA.............	20	1	2.00	2	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACACGTTTCCAATGGGA.............	21	1	2.00	2	0	0	2	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACGTTTCCAATGGGA.............	18	1	2.00	2	0	1	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGACACGTTTCCAATGGGAT............	23	1	2.00	2	0	0	1	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGACACGTTTCCAATGGGA.............	22	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACGTTTCCAATGGGATATGGCT......	25	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CCAACCTACCCCAGTATTTGACACGT........................	26	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATGGGATATGGCTA.....	19	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACGTTTCCAATGGGATA...........	20	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AACCTACCCCAGTATTTGACACGT........................	24	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGACACGTTTCCAATGGGA.............	24	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACGTTTCCAATGGGA.............	19	1	1.00	1	0	0	1	0	0

droVir3

T----------AGTTTGTTTT---ATACTA-----------------ATT---------------------------ACC---AAAA-----------------------------------------------------------------------------------ACAAAAAAGAAAATAA---AT---AGAT---------AACGATTATTTAAATTTTATTTTTCTGGACAAA--------------------------------------------------------------GCTAT--------------------CATTGCGAAA------------GCGTACTAATT--------CCCTTTT--------CCATTCTCAAATCG--A--ATT---AACAGCCGAACTGCCGCAGTATTTAACGCGTTTCCAATGGGACATGGCCAAGTAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGACATGGCCAAGT..	18	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCGTTTCCAATGGGA.............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAATGGGACATGG........	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCCGCAGTATTTAACGCGT........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................TGGACAAA--------------------------------------------------------------GCTAT--------------------CATTG...................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAACGCGTTTCCAATGGGACAC..........	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACGCGTTTCCAATGGGA.............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCCGCAGTATTTAACGCGT........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAACGCGTTTCCAATGGG..............	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTT---ATACTA-----------------ATT---------------------------ACC---AAAA-----------------------------------------------------------------------------------ACAAAAAA.............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAATGGGACATGGCC......	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAACGCGTTTCCAATGG...............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTATTTAACGCGTTTC.....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTTGTACAA--A----------------------------------------------AGGAAAATTTTGTGAAACTCAAGTTT----ATTTTTTCA----ATATTAC------AGCAATAC--A-TAATATTTTATTTATTTTTGA--------AATTTATTTATT--------------------------------------------------------TTATTTTTCTTGTAATAG------TTCTTTGCCAGTAAAATAA-TA------------------AATGAAATGAA-ACATTT-------------TA------TCAATTCGCAA---------------TACTAATC--------CATC-----------TTATTTTGA--------------AATCTAGCCGAACTACCGCAGTATTTAACGCGTTTCCAATGGGATATGGCCAAATAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAATGGGATATGGC.......	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACGCGTTTCCAATGGGATATG.........	24	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAATGGGATATGGCCAAAT..	24	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAACGCGTTTCCAATGGGA.............	22	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTAACGCGTTTCCAATGGGATATG.........	27	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAACGCGTTTCCAATGG...............	20	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAATGGGATATGGCCAAAT..	23	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAACGCGTTTCCAATGGGATATGGCT......	29	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAACGCGTTTCCAATGGG..............	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGTTTCCAATGGGATATGGCC......	24	1	1.00	1	0	0	0	0	0	1

droGri2

C----GGTT--TGTTTTGTA-------CTA-----------------AAAACAATAAAAGGAAAT--------GATTCAACTTTTAA-AGTT-T-TAGA-TAAATTAC------AGTAAA-T--T-TTATAATTTA--TATTTTCTA----------------------------AATTTG----ATAATG---GACTA-----------------------------------------G--------TTTTGCTAGTCAGCTACATAAAA--------------------ATGAAA-CAGTTT-------------CT-------CAATGTTCGA-GT---------GTAAACTAATCGATATATTCT---T----------------TGTA---CTC--GA--TAAACAGCCGATCTGCCTCAGTATTTGACCCGTTTCCAATGGGATATGGCCAAGTAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTATTTGACCCGTTTC.....................	18	1	1.00	1	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCAGTATTTGACCCGTT.......................	20	1	1.00	1	1	0

dsi_17345

2r:12884087-12884236 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads