ID:

dsi_17328

Coordinate:

3r:4334720-4334869 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-27.1	-26.6	-26.6

Flybase annnotation

intergenic

No Repeatable elements found

mature

star

Sense Strand Reads

TGAGTGTGGGTCGCAGCGACGCGAATAAAAGCAAAGACAAAGGCGGCAAAGTAAGTGAATTGTGTGTACATAAGCAAGATATGTAAGATGTAATTTCAAAATTGTACTCTGTAAATGTGCTCACATTTTGAAGTGGGAGTGAAAGCACGATAAACAACCCCAAATCACGCTGTCGCCCTGTCTCTTTTCATCATTTTTTTTGTGGGGGTGGCTGGTCCGTGTACCGTTAGCCGGCTGTTGTGTCCTCTCT ************************************************..((((((..((((.((((((..(((.((...(((.(((...........))).))))))))..)))))).))))...(((((.((((((((.(((..(((............)))..))).))))....)))).)))))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR1275487 Male larvae	SRR553488 RT_0-2 hours eggs	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
.....................................................................................................................................................................CACGCTGTCCCTCTGTCT...................................................................	18	2	6	0.50	3	0	0	3	0	0	0
......................................................................................................................................................................................................................GTCCGTGTACGGTTGGCCTGC...............	21	3	2	0.50	1	0	1	0	0	0	0
.........................................................................................................................................................ACAACCTCAACTCACGCT...............................................................................	18	2	2	0.50	1	1	0	0	0	0	0
......................................................GTGAATTGTGTGTAC.....................................................................................................................................................................................	15	0	2	0.50	1	1	0	0	0	0	0
.........................................................................................................................................................ACAACCTCAACTCATGCTGT.............................................................................	20	3	6	0.17	1	0	0	0	1	0	0
...........................................CGGCAACGTAAGTGA................................................................................................................................................................................................	15	1	9	0.11	1	0	0	0	0	1	0
.............CAGCGACGTGAATAAA.............................................................................................................................................................................................................................	16	1	13	0.08	1	0	0	0	0	0	1
.........................................................................................................................................................ACAACCTCAACTCGCGCTG..............................................................................	19	3	14	0.07	1	0	0	0	1	0	0
................................................................................................................................................................................................................................CGTTAGCTGGCTGATGT.........	17	2	18	0.06	1	1	0	0	0	0	0

Anti-sense strand reads

ACTCACACCCAGCGTCGCTGCGCTTATTTTCGTTTCTGTTTCCGCCGTTTCATTCACTTAACACACATGTATTCGTTCTATACATTCTACATTAAAGTTTTAACATGAGACATTTACACGAGTGTAAAACTTCACCCTCACTTTCGTGCTATTTGTTGGGGTTTAGTGCGACAGCGGGACAGAGAAAAGTAGTAAAAAAAACACCCCCACCGACCAGGCACATGGCAATCGGCCGACAACACAGGAGAGA ************************************************..((((((..((((.((((((..(((.((...(((.(((...........))).))))))))..)))))).))))...(((((.((((((((.(((..(((............)))..))).))))....)))).)))))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	M024 male body	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
.............................................................................................................................................TGTCGTGCTATTCGTTAGGGTT.......................................................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0
......ACCCAGCGGCGCTGAGCT..................................................................................................................................................................................................................................	18	2	3	0.33	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................AGTGCGACAGCTGAACA.....................................................................	17	2	12	0.33	4	0	0	0	3	0	0	0	1
..............................................................................................................................................................................................................TCACTGAGCAGGCACATGG.........................	19	3	3	0.33	1	0	1	0	0	0	0	0	0
...............................................................................................................................................................GGTCTAGTGCGACAG............................................................................	15	1	8	0.25	2	0	0	0	0	2	0	0	0
.......................................................................................................................................................TTTGTTGGGGTGTAGAGTGAC..............................................................................	21	3	6	0.17	1	0	0	0	0	0	1	0	0
.............................................................................................................................................................GGGGTGTAGTGCGACAGTGT.........................................................................	20	3	9	0.11	1	1	0	0	0	0	0	0	0
........................................................................................................................................................TTTTTGGGGTGTAGAGCGAC..............................................................................	20	3	12	0.08	1	0	0	0	0	0	1	0	0
...............................................................................................................................................................GGTTTAGTGCAACAG............................................................................	15	1	13	0.08	1	0	0	0	0	0	0	1	0
..........................................................................................................................................................................ACCGCGGGCCAGAGAA................................................................	16	2	20	0.05	1	0	0	0	0	0	0	1	0

Generated: 04/24/2015 at 01:43 AM