dsi_17314

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

AGCAGCAGCAACAACAGCAACAGCTGGGACACCAGATCTTCAGCAGCGCCGTTGCACCCACATCGATCAGCAGTGCGACTGCGGTGGCAGCCGGCGGCGGAGGCTATGGACAGTTCAATGCCACCGCCATCAGCACGCCCACCTCGTTCGCCACGGCCGGCAGTGTGGTCAGCAGCAGCGCCAAAGGTCCGACGAAGGGTCAGAAGGGGCAGCAGCAGCAGCACCAGCAGTTCCAGCACTACCAGAGCAG **************************************************************.........((.....((((((((..(((..(((....))).)))..........))))))))...))********************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M053 female body	GSM343915 embryo	M025 embryo	M024 male body	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	M023 head
................................................................GATCAGCAGTGCGACTGCGGT.....................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................GGCTGGCAGTGTGGTTAGC.............................................................................	19	2	1	1.00	1	1	0	0	0	0	0	0	0	0
........................................................................GTGCGACTGCGGTGGCAGCC..............................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0
........................................................................................................TATGGACAGTTCAATGCCACCGCCATCA......................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.......................................................................................CAGCCGGCGGCGGAGG...................................................................................................................................................	16	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GCAGCAGCAGCACCAGCAGTTCCAGCA............	27	0	1	1.00	1	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................GTCCGACGAAGGGTCAGAAGGGGC........................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................TGGCAGTGTGGTTAGCTGCAG........................................................................	21	3	3	0.33	1	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................CGGCAGTGTGGTCGGCAGCAG........................................................................	21	1	5	0.20	1	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................CGGCAGTGTGGTTAGCGG...........................................................................	18	2	5	0.20	1	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................CGGCAGTGTGGTTAGC.............................................................................	16	1	6	0.17	1	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................TGTGGTCGGCAGCAGGGGCAAAG................................................................	23	3	6	0.17	1	0	0	0	0	0	0	1	0	0
...............................................................TGATCAGCAGTGTGATTGCGG......................................................................................................................................................................	21	3	6	0.17	1	0	0	0	0	0	1	0	0	0
.........................................................................................GCCGGCGGCGGAGGCCA................................................................................................................................................	17	1	10	0.10	1	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................AGTGTGGTCGGCAGCACC.......................................................................	18	2	10	0.10	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AGGTCCGTCGTAGGGT..................................................	16	2	10	0.10	1	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................GGCAGTGTGGTTAGCTGCAA........................................................................	20	3	11	0.09	1	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................CGGCAGTGTGGTTAGCTGTA.........................................................................	20	3	13	0.08	1	0	0	0	0	0	0	0	0	1
.....CATCAACTACAGCAACATCTGG...............................................................................................................................................................................................................................	22	3	13	0.08	1	0	0	1	0	0	0	0	0	0

TCGTCGTCGTTGTTGTCGTTGTCGACCCTGTGGTCTAGAAGTCGTCGCGGCAACGTGGGTGTAGCTAGTCGTCACGCTGACGCCACCGTCGGCCGCCGCCTCCGATACCTGTCAAGTTACGGTGGCGGTAGTCGTGCGGGTGGAGCAAGCGGTGCCGGCCGTCACACCAGTCGTCGTCGCGGTTTCCAGGCTGCTTCCCAGTCTTCCCCGTCGTCGTCGTCGTGGTCGTCAAGGTCGTGATGGTCTCGTC ********************************************************************************************************************.........((.....((((((((..(((..(((....))).)))..........))))))))...))**************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	M024 male body	M023 head
................................................................................................................................TTGTCGTGCGGGTGGAGCGA......................................................................................................	20	2	1	1.00	1	1	0	0	0
...............................................................................................................................ATAGTCGTGCCGGTGGAGCAG......................................................................................................	21	3	3	0.33	1	0	1	0	0
.......................................................................................................................................................GTCACGGCCGTCACATCAGTC..............................................................................	21	3	5	0.20	1	0	0	1	0
...........................................................................................................................................................................................................................TCCTTGTCGTCAAGGTCGCGAT.........	22	3	5	0.20	1	0	1	0	0
.................................................CCAACTTGGGTGTAGCTG.......................................................................................................................................................................................	18	3	20	0.10	2	0	0	1	1
.......CGTTGTGGTTGTTGTCGCCCCTGT...........................................................................................................................................................................................................................	24	3	10	0.10	1	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:24283639-24283888 +	dsi_17314	AGCAGCAGCAACAACAGC------------AACAGCTGGGACACCAG---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACATCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGCAGCAGCA---------GCACCAGCAGTTCCAGCA----CTACCAG-AGCAG
droSec2	scaffold_4:3788405-3788654 +		AGCAGCAGCAACAACAGC------------AACAGCTGGGACACCAG---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACATCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGCAGCAGCA---------GCACCAGCAGTTTCAGCA----CTACCAG-AGCAG
dm3	chr3R:24923714-24923969 +		AGCAGCAGCAACAACAGC------------AACAGCTGGGACACCAG---ATCTTCAGCAGC---ACA-------------------GTTGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGGCGGCGGCG---------------------GGGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGCAGCAGCA---GCAGCAGCATCAGCAGTTCCAGCA----CTACCAG-AGCAG
droEre2	scaffold_4820:3107683-3107932 -		AGCAGCAACAACAACAGC------------AACAGCTGGGACACCAG---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGCAGCAGCA---------GCACCAGCAGTTCCAGCA----CTACCAG-AGCAG
droYak3	3R:21574265-21574517 -		AGCAGCAACAACAACAGC------------AACAGCTGGGACACCAA---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGCAGCAGCA------GCAGCACCAGCAGTTTCAACA----CTACCAG-AGCAG
droEug1	scf7180000409787:652361-652604 -		AGCAGCAGCAGCAACAAC---------AGCAACAGCTGGGTCATCAG---ATCTTTAGCAGC---GCC-------------------GTTGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGAG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACACCCACCTCGTTCGCCGC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGGCGAAGG-----------------GTCAGAAGGGA---------------------------C---AGCAGC------------------AACAGTTCCAGCA----CTACCAG-AGCAG
droBia1	scf7180000302136:3227612-3227879 -		AGCAGCAGCAGCAACAAC---------AGCAACAGCTGGGCCACCAG---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGAG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTTGCCAC--CTCGGT-----T-------G---GCAGTGTGGTCA---------CCA------------------GCAGCGGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGCAGCAGCAGCAGCAGCAGCACCAGCAGTTCCAGCA----CTACCAG-AGCAG
droTak1	scf7180000415310:162226-162472 +		AGCAGCAGCAACAACAGC------------AACAGCTGGGCCACCAG---ATCTTCAGCAGC---GCC-------------------GTCGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--CTCGGC-----C-------G---GCAGTTTGGTCA------------------------------GCAGCAGCGC------CAAGGGTCCGGCGAAGG-----------------GTCAGAAGGCG---------------------------C---AGCAGCA---------------GCAGCAATTCCAGCA----CTACCAG-AGCAG
droEle1	scf7180000491261:1506979-1507231 +		AGCAGCAGCAGCAGCAACAACAACAGCAGCAACAGCTGGGCCACCAG---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACCTCGATTAGC------AGTGCGACGGCGGTGGCATCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GGCCAC-----G-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGC---------------------AACAGTTCCAGCA----CTACCAG-AGCAG
droRho1	scf7180000780007:114741-114987 -		AGCAGCAGCAACAACAGC---------AGCAACAGCTGGGTCACCAG---ATCTTTAGCAGC---GCC-------------------GTTGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACTGTCATCAGC---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCG------------------------------GCAGCAGCGC------CAAAGGTACGACGAAGG-----------------GCCAGAAGGGG---------------------------C---AGCAG---------------CAACAGCAGTTCCAGCA----CTACCAG-AGCAG
droFic1	scf7180000453826:677032-677320 -		AGCAGCAGCAGCAGCAGCAACAAC---AGCAACAGCTGGGCCACCAG---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACCTCGCTCAGC------AGTGCGACTGCGGTGGCAGCCGGAGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GGCAGC-----C-------GGCAGCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAGGGTCCGCAAAAGA-----------------GCCAGAAGGGGCAACACCACCAGCAGCAGCAACAC---C---AGCAGCAGCA---------GCAGCAGCAGTTCCAGCA----CTACCAG-AGCAG
droKik1	scf7180000302705:92338-92587 +		AGCAGCAGCAGGTGCAGC------------AACAGTTGGGCCACCAG---ATCTTCAGTAGCAGCGCC-------------------GTTGCACC-----CACCTCGATCAGC------AGCGCGACAGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGCTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCTAC--GA---C-----C-------G---GAAGTGTGGTCA------------------------------GCAGCGGCTC------CAAGGGCCCGGCGAAGG-----------------GTCAGAAGGCT---------------------------C---AGCAGCAACA------------GCAGCAGTTCCAGCA----CTATCAG-AGCAG
droAna3	scaffold_13340:19651986-19652256 -		AGCAGCAGCAGCAACAAC------------AGCAGCTGGGCCATCAG---ATCTTCAGCAGCAACGCC-------------------GTTGCACC-----CACCTCCATCAGC------AGTGCGACGGCAGTGGCCGGCGGCGGCGGCGCAGGCGGAGTAGGAGTTGGAGGCTATGG---ACAGCTCAATGCC--ACCGCCATCAGT---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCATCACCGGTAGCAAGGGCCCGGCGAAGG-----------------GCCAGAAGGGG---------------------------C---AGCAG------------------CAGCAGTTCCAGCA----CTACCAG-AGCAG
droBip1	scf7180000396413:2735159-2735420 +		AGCAGCAACAGCAACAG---------------CAGCTGGGCCATCAG---ATCTTCAGCAGCAACGCC-------------------GTTGCCCC-----CACCTCGATCAGC------AGTGCCACGGCAGTGGGAGCCGGCGGCG---GAGGCGGAGTAGGAGTCGGAGGCTATGG---ACAGCTCAATGCC--ACCGCCATCAGT---------ACGCCCACCTCGTTCGCCAC--TG---C-----T-------G---GCAGTGTGGTCA------------------------------GCAGCGTCAGCGGTAGCAAGGGCCCGGCCAAGG-----------------GCCAGAAGGGG---------------------------C---AGC---------------------AGCAGTTCCAGCA----CTACCAG-AGCAG
dp5	2:9761781-9762030 -		ATCAGCAGC------------------------AGCTGGGACACCAG---ATCTTCAGCAGCCAGGCC-------------------GTTGCGCC-----CACCTCCATCAGC------AGCGTAGGGACAGT---AGCCGGCG---------------------------GCTATGGGCAACAACTCAATGCC--ACGGCCATCAGCATCAGCAGTACGCCCACTTCGTTTGCGAC--GG---C-----A-------------AACGTGGTCA------------------------------GCAGCGGGTC------CAAGAATCAGGCGAAGAAGGCCGCCCAGACCACGGT------GGT--------------------------GAGCCATCA---------------GCAGCAGCAGTTCCAGCA----CTACCAG-AGCAG
droPer2	scaffold_0:10717700-10717949 +		ATCAGCAGC------------------------AGCTGGGACACCAG---ATATTCAGCAGCCAGGCC-------------------GTTGCGCC-----CACCTCCATCAGC------AGCGTAGGGACAGT---AGCCGGCG---------------------------GCTATGGGCAACAACTCAATGCC--ACGGCCATCAGCATCAGCAGTACGCCCACTTCGTTTGCGAC--GG---C-----A-------------AACGTGGTCA------------------------------GCAGCGGGTC------CAAGAATCAGGCGAAGAAGACCGCCCAGACCACGGT------GGT--------------------------GAGCCATCA---------------GCAGCAGCAGTTCCATCA----CTACCAG-AGCAG
droWil2	scf2_1100000004909:7006880-7007136 -		AGCAACAGCAGCAGCAGC------------AACTTC--ACTCGCCTATCCATCACCAGCAAC---ATCACCAGCATCAGCATCCACATCAG------------------CAA--------CATCAACACCAACAGCAGCTACAGGCA---------------------GG-----CGG---ACATCCTGTCACCCAGCTGTCGCCTGC---------CCATCATTTACTTTCCCCGC--AG---CAT---CAACAATTGGCAGCAGCA---------------------------------------GTGG--C------TGCCGCTGCGGCGCAAC-----------------AGCATCAGCAG---------------CAG---------C---AACAACAACA---------GCAGCAGCAGCAGCAGCA---ACAACAAC-AACAG
droVir3	scaffold_13047:13329115-13329353 +		AGCAGCAGCAGCAACAGC------------AACAGCAACAGCAACAA--------CAGCAGC------------------AACAGCAGCAGCAACATCACCAGGCCCAACAGCAGCAACAGCAGCGTTTCATG---AGCCACCAGCC---------------------G-----------------TCACTTTC--GCCG-CATCCGCATCGCCT-------GTCCTCGTCCTCGACACCGC--CA-GGCT-------T---GCAGCATGCGCT------------------------------GCAGCAGCAG------CAG---------------------------------------------------------CAGCATCTGTTGCAGCAGCA---------------ACAGCAGCATTTACAGCAGCATCTGCAAC-AGCAG
droMoj3	scaffold_4914:853-1097 +		AGCAGCAGCCACAGCAGC------------AACAGCAGGAGCAGCAG--CAACAGCAACAG-----CC-------------------GCAGCAGCAACGGCAGCAACATCAGCAG-----CAGCAACAGCAGCAGCAGC-AGCAGCA---------------------GCAGCAAC-A---ACAG--------C--AGCAGCAACAGC---------AGCAGCAG-------------------------C-------A---ACAGTAGCAGCA---------GCAGCAGCAGCAGTAACGGCAGCAACATCAG------CAG---------CA-----------GAAGC----AGCGACAGCAG---------------------------C---AGCAGCAGCA---------GCAACAGCAGTAACAGCA----GTAGCAGTAGCAG
droGri2	scaffold_14612:1131-1373 +		AGCAGCAGCAGCAGCAGC------------AGCAGCAGCGGCAGCAG--------------C---AGCGGC---------AGCAGCAGCAGCAGCAG---CAGCAGCAGCAGC------A--GCAGCAGCAGCAGCATGCGGCAGCA---------------------GCAGC---------------AGCAGC--AGCGGCAGCAGC---------AGCAGCAGCAG--------------------------------------CGGCAGCAGCAGCAGCGGCAGCATCAGCA---------TCAGCAGCAG------CAAAAACGGCAGCA-----------CCAAC----AGCAGCAGCGG---------------------------C---AGCAGCAGCA---------GCAGCAGCGGCAGCAGCG---GCAGCAGC-AGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGCAGCAGCAACAACAGC------------AACAGCTGGGACACCAG---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACATCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGCAGCAGCA---------GCACCAGCAGTTCCAGCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................GATCAGC------AGTGCGACTGCGGT.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................GTGCGACTGCGGTGGCAGCC......................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................TATGG---ACAGTTCAATGCC--ACCGCCATCA....................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CAGCCGGCGGCG---------------------GAGG......................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---------GCACCAGCAGTTCCAGCA----.............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---......................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGCAGCAGCAACAACAGC------------AACAGCTGGGACACCAG---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACATCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGCAGCAGCA---------GCACCAGCAGTTTCAGCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................................GTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGC...................................................	27	1	1.00	1	0	0	1	0
......................................................................................................CATCGATCAGC------AGTGCGACTGCGGT.............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
...............................................................................................................................TGCGGTGGCAGCCGGCGGCG---------------------GAGGC.....................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---------GCACCAGCAGT........................	18	6	0.17	1	0	0	1	0

dm3

AGCAGCAGCAACAACAGC------------AACAGCTGGGACACCAG---ATCTTCAGCAGC---ACA-------------------GTTGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGGCGGCGGCG---------------------GGGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGCAGCAGCA---GCAGCAGCATCAGCAGTTCCAGCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................ACAGTTCAATGCC--ACCGC.........................................................................................................................................................................................................................................................	18	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................G---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGC.............................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................AGC------AGTGCGACTGCGGTGGCAGGCGGC...................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................TCAGC------AGTGCGACTGCGGTGGCAGGCGGC...................................................................................................................................................................................................................................................................................................................	29	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................CACCTCGATCAGC------AGTGCGACT..................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CC-----CACCTCGATCAGC------AGTGCGACTGCGG..............................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................AGCAGCGC------CAAAGGTCCGACGA....................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................CAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GT................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CTATGG---ACAGTTCAATGCC--ACCA..........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................TCAGC------AGTGCGACTGCGGTGGCAGGCGGAA..................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGTGCGACTGCGGTGGCAGGCG.....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GGTCA------------------------------GCAGCAGCGC------CAAAGGT...........................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GCA---GCAGCAGCATCAGCAGTT.......................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA---GCAGCAGCATC..............................	21	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................C-------G---GCAGTGTGGTCA------------------------------GCAGGCT...........................................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGCAGCAACAACAACAGC------------AACAGCTGGGACACCAG---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGCAGCAGCA---------GCACCAGCAGTTCCAGCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................ACC-----CACCTCGATCAGC------AGTGCGACTGCGGT.............................................................................................................................................................................................................................................................................................................................	30	1	4.00	4	0	0	0	0	0	0	4
...................................................TCTTCAGCAGC---GCC-------------------GTTGCACC-----CACCT.........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................CTCGATCAGC------AGTGCGACTGCGGT.............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................CGATCAGC------AGTGCGACTGCGGT.............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................CTATGG---ACAGTTCAATGCC--ACCGCC........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTCCAGCA----CTACCAG-AGCA.	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTC..........................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---------GCACCAGCAGT........................	18	2	0.50	1	0	0	0	0	1	0	0
......AACAACAACAGC------------AACAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.33	2	0	0	0	0	0	2	0
.....CAACAACAACAGC------------AACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0

droYak3

AGCAGCAACAACAACAGC------------AACAGCTGGGACACCAA---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGCAGCAGCA------GCAGCACCAGCAGTTTCAACA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................GCGGTGGCAGCCGGCGGCG---------------------GAGGC.....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................GC------CAAAGGTCCGACGAAG..................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................TCAGCAGC---GCC-------------------GTTGCACC-----C.............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................ACCGCCATCAGC---------ACGCCCACCT...............................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGTGCGACTGCGGTGGCAGCC......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---A.....................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................CACCAA---ATCTTCAGCAGC---GC...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....CAACAACAACAGC------------AA..................................................................................................................................................................................................................................................................................................................................................................................................................................	15	20	0.50	10	0	0	0	0	0	0	0	0	0	0	10
...AGCAACAACAACAGC------------AACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AGCAGCAGCAGCAACAAC---------AGCAACAGCTGGGTCATCAG---ATCTTTAGCAGC---GCC-------------------GTTGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGAG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACACCCACCTCGTTCGCCGC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGGCGAAGG-----------------GTCAGAAGGGA---------------------------C---AGCAGC------------------AACAGTTCCAGCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCAGCAGCAGCAACAAC---------AGCAACAGCTGGGCCACCAG---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGAG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTTGCCAC--CTCGGT-----T-------G---GCAGTGTGGTCA---------CCA------------------GCAGCGGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGCAGCAGCAGCAGCAGCAGCACCAGCAGTTCCAGCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGCAGCAGCAACAACAGC------------AACAGCTGGGCCACCAG---ATCTTCAGCAGC---GCC-------------------GTCGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--CTCGGC-----C-------G---GCAGTTTGGTCA------------------------------GCAGCAGCGC------CAAGGGTCCGGCGAAGG-----------------GTCAGAAGGCG---------------------------C---AGCAGCA---------------GCAGCAATTCCAGCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCAGCAGCAGCAGCAACAACAACAGCAGCAACAGCTGGGCCACCAG---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACCTCGATTAGC------AGTGCGACGGCGGTGGCATCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GGCCAC-----G-------G---GCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAAGGTCCGACGAAGG-----------------GTCAGAAGGGG---------------------------C---AGC---------------------AACAGTTCCAGCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCAGCAGCAACAACAGC---------AGCAACAGCTGGGTCACCAG---ATCTTTAGCAGC---GCC-------------------GTTGCACC-----CACCTCGATCAGC------AGTGCGACTGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACTGTCATCAGC---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCG------------------------------GCAGCAGCGC------CAAAGGTACGACGAAGG-----------------GCCAGAAGGGG---------------------------C---AGCAG---------------CAACAGCAGTTCCAGCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGCAGCAGCAGCAGCAGCAACAAC---AGCAACAGCTGGGCCACCAG---ATCTTCAGCAGC---GCC-------------------GTTGCACC-----CACCTCGCTCAGC------AGTGCGACTGCGGTGGCAGCCGGAGGCG---------------------GAGGCTATGG---ACAGTTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCCAC--GGCAGC-----C-------GGCAGCAGTGTGGTCA------------------------------GCAGCAGCGC------CAAGGGTCCGCAAAAGA-----------------GCCAGAAGGGGCAACACCACCAGCAGCAGCAACAC---C---AGCAGCAGCA---------GCAGCAGCAGTTCCAGCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCAGCAGCAGGTGCAGC------------AACAGTTGGGCCACCAG---ATCTTCAGTAGCAGCGCC-------------------GTTGCACC-----CACCTCGATCAGC------AGCGCGACAGCGGTGGCAGCCGGCGGCG---------------------GAGGCTATGG---ACAGCTCAATGCC--ACCGCCATCAGC---------ACGCCCACCTCGTTCGCTAC--GA---C-----C-------G---GAAGTGTGGTCA------------------------------GCAGCGGCTC------CAAGGGCCCGGCGAAGG-----------------GTCAGAAGGCT---------------------------C---AGCAGCAACA------------GCAGCAGTTCCAGCA----CTATCAG-AGCAG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGCAGCAGCAGCAACAAC------------AGCAGCTGGGCCATCAG---ATCTTCAGCAGCAACGCC-------------------GTTGCACC-----CACCTCCATCAGC------AGTGCGACGGCAGTGGCCGGCGGCGGCGGCGCAGGCGGAGTAGGAGTTGGAGGCTATGG---ACAGCTCAATGCC--ACCGCCATCAGT---------ACGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCATCACCGGTAGCAAGGGCCCGGCGAAGG-----------------GCCAGAAGGGG---------------------------C---AGCAG------------------CAGCAGTTCCAGCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........GCAACAAC------------AGCAGCTGGGCCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................CTATGG---ACAGCTCAATGCC--ACC...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...............................................................ACGCC-------------------GTTGCACC-----CACCTCCA......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................GGCGGCGGCGGCGCAGGCGGA....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................ACCTCGTTCGCCAC--GG---C-----C-------G---GCT.........................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
.............................................................................................................................................................................................................................CCACCTCGTTCGCCAC--GG---C-----C-------G---GCAG........................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AGCAAGGGCCCGGCGAAG..................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
................................................................................................................................GCAGTGGCCGGCGGCGGCGG..............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GTCA------------------------------GCAGCATCACCGGT....................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................GGTAGCAAGGGCCCGGCGAAGG-----------------................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................CAC--GG---C-----C-------G---GCAGTGTGGTCA------------------------------GCAGCA............................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................CGCCCACCTCGTTCGCCAC--GG---C-----C-------G---GC..........................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
............................................................................................................................GACGGCAGTGGCCGGCGGCGGCGG..............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droBip1

AGCAGCAACAGCAACAG---------------CAGCTGGGCCATCAG---ATCTTCAGCAGCAACGCC-------------------GTTGCCCC-----CACCTCGATCAGC------AGTGCCACGGCAGTGGGAGCCGGCGGCG---GAGGCGGAGTAGGAGTCGGAGGCTATGG---ACAGCTCAATGCC--ACCGCCATCAGT---------ACGCCCACCTCGTTCGCCAC--TG---C-----T-------G---GCAGTGTGGTCA------------------------------GCAGCGTCAGCGGTAGCAAGGGCCCGGCCAAGG-----------------GCCAGAAGGGG---------------------------C---AGC---------------------AGCAGTTCCAGCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total
No Reads

dp5

ATCAGCAGC------------------------AGCTGGGACACCAG---ATCTTCAGCAGCCAGGCC-------------------GTTGCGCC-----CACCTCCATCAGC------AGCGTAGGGACAGT---AGCCGGCG---------------------------GCTATGGGCAACAACTCAATGCC--ACGGCCATCAGCATCAGCAGTACGCCCACTTCGTTTGCGAC--GG---C-----A-------------AACGTGGTCA------------------------------GCAGCGGGTC------CAAGAATCAGGCGAAGAAGGCCGCCCAGACCACGGT------GGT--------------------------GAGCCATCA---------------GCAGCAGCAGTTCCAGCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................TCAGC------AGCGTAGGGACAGT---AG........................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	2	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CA---------------GCAGCAGCAGTTCCAGC..................	19	3	1.00	3	1	0	0	0	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................A------------------------------GCAGCGGGTC------CAAGAATCAGGC......................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................AGC------AGCGTAGGGACAGT---AGCCGGC...................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................GTAGGGACAGT---AGCCGGC...................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................ACGTGGTCA------------------------------GCAGCGGGTC------C.................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................ACTCAATGCC--ACGGCCATCAGCAT................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CA---------------GCAGCAGCAGTTCCAGCA----.............	20	2	0.50	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................ATCA---------------GCAGCAGCAGTTCCAGC..................	21	3	0.33	1	0	0	0	0	0	1	0	0	0	0

droPer2

ATCAGCAGC------------------------AGCTGGGACACCAG---ATATTCAGCAGCCAGGCC-------------------GTTGCGCC-----CACCTCCATCAGC------AGCGTAGGGACAGT---AGCCGGCG---------------------------GCTATGGGCAACAACTCAATGCC--ACGGCCATCAGCATCAGCAGTACGCCCACTTCGTTTGCGAC--GG---C-----A-------------AACGTGGTCA------------------------------GCAGCGGGTC------CAAGAATCAGGCGAAGAAGACCGCCCAGACCACGGT------GGT--------------------------GAGCCATCA---------------GCAGCAGCAGTTCCATCA----CTACCAG-AGCAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................CAACAACTCAATGCC--ACGGC.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................................................GCAGCCAGGCC-------------------GTTGCGCC-----CACCTCC.......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................CA------------------------------GCAGCGGGTC------CAAGAATCAGGC......................................................................................................................	24	1	1.00	1	0	1	0	0	0	0

droWil2

AGCAACAGCAGCAGCAGC------------AACTTC--ACTCGCCTATCCATCACCAGCAAC---ATCACCAGCATCAGCATCCACATCAG------------------CAA--------CATCAACACCAACAGCAGCTACAGGCA---------------------GG-----CGG---ACATCCTGTCACCCAGCTGTCGCCTGC---------CCATCATTTACTTTCCCCGC--AG---CAT---CAACAATTGGCAGCAGCA---------------------------------------GTGG--C------TGCCGCTGCGGCGCAAC-----------------AGCATCAGCAG---------------CAG---------C---AACAACAACA---------GCAGCAGCAGCAGCAGCA---ACAACAAC-AACAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................CATCCTGTCACCCAGCTGTC........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................GTCACCCAGCTGTCGCCTGC---------CC.......................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
................................................................................ATCCACATCAG------------------CAA--------CATCG.....................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA---------GCAGCAGCAGCAGCA....................	21	20	0.35	7	0	0	0	7	0
............................................................................................................................................................................................................................................................................................................................................GCAAC-----------------AGCATCAGCAG---------------CAG---------C---......................................................	20	5	0.20	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACA---------GCAGCAGCAGCAGCA....................	25	20	0.10	2	0	0	0	2	0
.............................................................................................................................................................................................................................................................................................................................................................................................AG---------C---AACAACAACA---------GCAGCAGCA..........................	22	20	0.10	2	0	0	0	2	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA---------GCAGCAGCAGCAGCAGCA---..............	26	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................AG---------C---AACAACAACA---------GCAGCAGCAGC........................	24	20	0.05	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................ATCAGCAG---------------CAG---------C---AACAACAACA---------...................................	22	20	0.05	1	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................AACAACA---------GCAGCAGCAGCAGC.....................	21	20	0.05	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA---ACAACAAC-A....	21	20	0.05	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................AAC-----------------AGCATCAGCAG---------------CAG---------C---......................................................	18	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................AG---------C---AACAACAACA---------GCAGCAGC...........................	21	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCA---ACAACA........	21	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................C-----------------AGCATCAGCAG---------------CAG---------C---AAC...................................................	19	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................C---AACAACAACA---------GCAGCAGCAGCA.......................	23	20	0.05	1	0	0	1	0	0

droVir3

AGCAGCAGCAGCAACAGC------------AACAGCAACAGCAACAA--------CAGCAGC------------------AACAGCAGCAGCAACATCACCAGGCCCAACAGCAGCAACAGCAGCGTTTCATG---AGCCACCAGCC---------------------G-----------------TCACTTTC--GCCG-CATCCGCATCGCCT-------GTCCTCGTCCTCGACACCGC--CA-GGCT-------T---GCAGCATGCGCT------------------------------GCAGCAGCAG------CAG---------------------------------------------------------CAGCATCTGTTGCAGCAGCA---------------ACAGCAGCATTTACAGCAGCATCTGCAAC-AGCAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................CAGCAACAA--------CAGCAGC------------------AACAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....GCAGCAGCAACAGC------------AACAGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GCAGCAGCAACAGC------------AACAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AGCAGCAACAGC------------AACAGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AACAGC------------AACAGCAACAGCAACAA--------CAGCA......................................................................................................................................................................................................................................................................................................................................................................................................	28	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................AGCAGC------------------AACAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CAGCAACAGC------------AACAGCAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................CAGCAGC------------------AACAGCAGCAGCAACA..................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................AA--------CAGCAGC------------------AACAGCAGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCAGCAGCAGCAACAGC------------AACAGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CAA--------CAGCAGC------------------AACAGCAGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CAGC------------AACAGCAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................AGCAACAA--------CAGCAGC------------------AACA..............................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CAGCAACAGC------------AACAGCAACAGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................C------------------AACAGCAGCAGCAACATC................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................ACAGCAACAA--------CAGCAGC------------------AACAG.............................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................AACAA--------CAGCAGC------------------AACAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GC------------AACAGCAACAGCAACAA--------C..........................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ACAGCAACAGCAACAA--------CAGCAGC------------------A.................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GCAGCAACAGC------------AACAGCAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................AACAGCAACAA--------CAGCAGC------------------AAC...............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCAACAA--------CAGCAGC------------------AACAGCA...........................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................CAACAA--------CAGCAGC------------------AACAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................GCAGC------------------AACAGCAGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................A--------CAGCAGC------------------AACAGCAGCAGCAA....................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ACAGCAACAGCAACAA--------CAGCAGC------------------..................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCAACAA--------CAGCAGC------------------AACAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................ACAGCAACAA--------CAGCAGC------------------AA................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAGCAACAA--------CAGCAGC------------------AACAGCA...........................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CAGCAGCAGCAACAGC------------AACA................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCAACAA--------CAGCAGC------------------AACAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................CAACAA--------CAGCAGC------------------AACAGC............................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CAGCAGCAGCAACAGC------------AACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................AGCAACAA--------CAGCAGC------------------AACAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGCAGCAGCAGCAACAGC------------AACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CAACAGC------------AACAGCAACAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GCAGCAACAGC------------AACAGCAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CAGCAACAGCAACAA--------CAGCA......................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................A--------CAGCAGC------------------AACAGCAGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................AACAA--------CAGCAGC------------------AACAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCAGCAGCCACAGCAGC------------AACAGCAGGAGCAGCAG--CAACAGCAACAG-----CC-------------------GCAGCAGCAACGGCAGCAACATCAGCAG-----CAGCAACAGCAGCAGCAGC-AGCAGCA---------------------GCAGCAAC-A---ACAG--------C--AGCAGCAACAGC---------AGCAGCAG-------------------------C-------A---ACAGTAGCAGCA---------GCAGCAGCAGCAGTAACGGCAGCAACATCAG------CAG---------CA-----------GAAGC----AGCGACAGCAG---------------------------C---AGCAGCAGCA---------GCAACAGCAGTAACAGCA----GTAGCAGTAGCAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................CA-----------GAAGC----AGCGACAGCAG---------------------------C---AG....................................................	21	4	0.25	1	0	0	0	1	0	0
..................................................AACAGCAACAG-----CC-------------------GCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................	22	5	0.20	1	1	0	0	0	0	0
.......................................................................................................................................................................................................AGCAACAGC---------AGCAGCAG-------------------------C-------A---ACAGTA......................................................................................................................................................................................	25	6	0.17	1	0	0	0	0	1	0
................................................................................................................................................GCA---------------------GCAGCAAC-A---ACAG--------C--AGC...........................................................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
............................................CAG--CAACAGCAACAG-----CC-------------------GCA........................................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	0	1	0
.......................................................CAACAG-----CC-------------------GCAGCAGCAAC................................................................................................................................................................................................................................................................................................................................................................	19	15	0.07	1	1	0	0	0	0	0
......................................................................................................GCAACATCAGCAG-----CAGCAAC...................................................................................................................................................................................................................................................................................................................................	20	18	0.06	1	0	0	0	0	1	0
................................................................................................................CAG-----CAGCAACAGCAGCAGCAGC-AGCA..................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................TAGCAGCA---------GCAGCAGCAGCAGT.........................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
........................................................................................................AACATCAGCAG-----CAGCAACA..................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...........................................................................................................ATCAGCAG-----CAGCAACAGCAGC.............................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................AC-A---ACAG--------C--AGCAGCAACAGC---------AGCAG....................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................GCAGC-AGCAGCA---------------------GCAGCAAC-A---ACAG--------C--A.............................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................AAC-A---ACAG--------C--AGCAGCAACAGC---------AGCAGC...................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
............................................................................................................................................................................CAAC-A---ACAG--------C--AGCAGCAAC.....................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................AGCAAC-A---ACAG--------C--AGCAGCAACAGC---------.........................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.................................................................................................................AG-----CAGCAACAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................CAGTAGCAGCA---------GCAGCAGCA..............................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................C---AGCAGCAGCA---------GCAACAGCAG.........................	21	20	0.05	1	1	0	0	0	0	0
............................................................................................................TCAGCAG-----CAGCAACAGCAGC.............................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................CA---------GCAGCAGCAGCAGTAAC......................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
..................................................................................................................................................A---------------------GCAGCAAC-A---ACAG--------C--AGCAGCAACAGC---------.........................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
........................................GCAGCAG--CAACAGCAACAG-----................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................CAGCAAC-A---ACAG--------C--AGCAGC........................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.................................AGCAGGAGCAGCAG--CAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0
...............................................................................................................................................................................C-A---ACAG--------C--AGCAGCAACAGC---------A........................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................AAC-A---ACAG--------C--AGCAGCAACAGC---------AGC......................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
......................................................GCAACAG-----CC-------------------GCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0

droGri2

AGCAGCAGCAGCAGCAGC------------AGCAGCAGCGGCAGCAG--------------C---AGCGGC---------AGCAGCAGCAGCAGCAG---CAGCAGCAGCAGC------A--GCAGCAGCAGCAGCATGCGGCAGCA---------------------GCAGC---------------AGCAGC--AGCGGCAGCAGC---------AGCAGCAGCAG--------------------------------------CGGCAGCAGCAGCAGCGGCAGCATCAGCA---------TCAGCAGCAG------CAAAAACGGCAGCA-----------CCAAC----AGCAGCAGCGG---------------------------C---AGCAGCAGCA---------GCAGCAGCGGCAGCAGCG---GCAGCAGC-AGCAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................................................................................................AGC---------AGCAGCAGCAG--------------------------------------CGGCAGC.................................................................................................................................................................................	21	20	0.10	2	2	0
..................................................................................................................................................A---------------------GCAGC---------------AGCAGC--AGCGGCAGC.....................................................................................................................................................................................................................................................	21	20	0.10	2	2	0
...............................................................................................................................................................................................................C---------AGCAGCAGCAG--------------------------------------CGGCAGCA................................................................................................................................................................................	20	20	0.05	1	1	0
.................................................................................................................................................................................................................................CAG--------------------------------------CGGCAGCAGCAGCAGCGGC.....................................................................................................................................................................	22	20	0.05	1	0	1
.........................................................................................................................................TGCGGCAGCA---------------------GCAGC---------------AGCAG.................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0
.........................................................................................................................................................................CAGC---------------AGCAGC--AGCGGCAGCA....................................................................................................................................................................................................................................................	20	20	0.05	1	1	0
...........................................................................................................................................................................................................GCAGC---------AGCAGCAGCAG--------------------------------------CGGCAGCA................................................................................................................................................................................	24	20	0.05	1	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------GCAGCAGCGGCAGCA....................	20	20	0.05	1	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---------GCAGCAGCGGCAGCA....................	24	20	0.05	1	1	0

-25.4	-25.4	-24.9	-24.8

dsi_17314

3r:24283689-24283838 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads